Experiment: Collected from freezer stock
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00920 and MMP_RS00925 are separated by 47 nucleotides MMP_RS00925 and MMP_RS00930 are separated by 90 nucleotides MMP_RS00930 and MMP_RS00935 are separated by 9 nucleotides
MMP_RS00920: MMP_RS00920 - TRC40/GET3/ArsA family transport-energizing ATPase, at 172,067 to 173,104
_RS00920
MMP_RS00925: MMP_RS00925 - sirohydrochlorin nickelochelatase, at 173,152 to 173,586
_RS00925
MMP_RS00930: MMP_RS00930 - ABC transporter permease, at 173,677 to 174,438
_RS00930
MMP_RS00935: MMP_RS00935 - MATE family efflux transporter, at 174,448 to 175,830
_RS00935
Position (kb) 173
174
175 Strain fitness (log2 ratio) -1
0
1 at 173.068 kb on - strand at 173.098 kb on + strand at 173.179 kb on - strand at 173.179 kb on - strand at 173.224 kb on - strand at 173.225 kb on + strand at 173.449 kb on + strand at 173.652 kb on + strand at 173.652 kb on + strand at 173.656 kb on + strand at 173.705 kb on - strand at 173.713 kb on - strand at 173.788 kb on - strand, within MMP_RS00930 at 173.816 kb on - strand, within MMP_RS00930 at 173.816 kb on - strand, within MMP_RS00930 at 173.817 kb on + strand, within MMP_RS00930 at 173.817 kb on + strand, within MMP_RS00930 at 173.832 kb on - strand, within MMP_RS00930 at 173.834 kb on - strand, within MMP_RS00930 at 173.911 kb on - strand, within MMP_RS00930 at 174.257 kb on - strand, within MMP_RS00930 at 174.450 kb on + strand at 174.486 kb on - strand at 174.504 kb on + strand at 174.504 kb on + strand at 174.526 kb on + strand at 174.589 kb on - strand, within MMP_RS00935 at 174.603 kb on - strand, within MMP_RS00935 at 174.769 kb on + strand, within MMP_RS00935 at 174.797 kb on + strand, within MMP_RS00935 at 174.804 kb on - strand, within MMP_RS00935 at 174.931 kb on - strand, within MMP_RS00935 at 175.267 kb on - strand, within MMP_RS00935 at 175.270 kb on - strand, within MMP_RS00935 at 175.270 kb on - strand, within MMP_RS00935 at 175.274 kb on - strand, within MMP_RS00935 at 175.324 kb on + strand, within MMP_RS00935 at 175.328 kb on - strand, within MMP_RS00935 at 175.328 kb on - strand, within MMP_RS00935 at 175.328 kb on - strand, within MMP_RS00935 at 175.329 kb on + strand, within MMP_RS00935 at 175.329 kb on + strand, within MMP_RS00935 at 175.341 kb on - strand, within MMP_RS00935 at 175.341 kb on - strand, within MMP_RS00935 at 175.341 kb on - strand, within MMP_RS00935 at 175.342 kb on + strand, within MMP_RS00935 at 175.390 kb on - strand, within MMP_RS00935 at 175.391 kb on + strand, within MMP_RS00935 at 175.394 kb on + strand, within MMP_RS00935
Per-strain Table
Position Strand Gene LocusTag Fraction Collected from freezer stock remove 173,068 - +0.3 173,098 + -1.1 173,179 - +0.5 173,179 - +0.5 173,224 - -0.1 173,225 + +0.1 173,449 + +0.6 173,652 + +0.8 173,652 + -0.2 173,656 + +0.6 173,705 - -0.3 173,713 - -0.1 173,788 - MMP_RS00930 0.15 -0.1 173,816 - MMP_RS00930 0.18 -0.1 173,816 - MMP_RS00930 0.18 -0.6 173,817 + MMP_RS00930 0.18 -0.6 173,817 + MMP_RS00930 0.18 +0.2 173,832 - MMP_RS00930 0.20 +0.1 173,834 - MMP_RS00930 0.21 -0.0 173,911 - MMP_RS00930 0.31 -0.1 174,257 - MMP_RS00930 0.76 -0.4 174,450 + +0.4 174,486 - +0.7 174,504 + -0.6 174,504 + +0.3 174,526 + -0.0 174,589 - MMP_RS00935 0.10 +0.0 174,603 - MMP_RS00935 0.11 +0.4 174,769 + MMP_RS00935 0.23 +0.9 174,797 + MMP_RS00935 0.25 +0.6 174,804 - MMP_RS00935 0.26 -0.3 174,931 - MMP_RS00935 0.35 -0.3 175,267 - MMP_RS00935 0.59 +1.6 175,270 - MMP_RS00935 0.59 -0.2 175,270 - MMP_RS00935 0.59 +0.7 175,274 - MMP_RS00935 0.60 +0.8 175,324 + MMP_RS00935 0.63 +0.3 175,328 - MMP_RS00935 0.64 -0.4 175,328 - MMP_RS00935 0.64 -0.0 175,328 - MMP_RS00935 0.64 -0.2 175,329 + MMP_RS00935 0.64 -0.5 175,329 + MMP_RS00935 0.64 -0.2 175,341 - MMP_RS00935 0.65 +0.7 175,341 - MMP_RS00935 0.65 -0.3 175,341 - MMP_RS00935 0.65 +0.4 175,342 + MMP_RS00935 0.65 +0.0 175,390 - MMP_RS00935 0.68 +0.6 175,391 + MMP_RS00935 0.68 +1.6 175,394 + MMP_RS00935 0.68 -0.2
Or see this region's nucleotide sequence