Experiment: Defined media, anaerobic, with FW301 groundwater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_21300 and IAI47_21305 overlap by 4 nucleotides IAI47_21305 and IAI47_21310 are separated by 111 nucleotides IAI47_21310 and IAI47_21315 are separated by 0 nucleotides IAI47_21315 and IAI47_21320 are separated by 121 nucleotides
IAI47_21300: IAI47_21300 - AzlD domain-containing protein, at 515,653 to 515,976
_21300
IAI47_21305: IAI47_21305 - AzlC family ABC transporter permease, at 515,973 to 516,641
_21305
IAI47_21310: IAI47_21310 - helix-turn-helix domain-containing protein, at 516,753 to 517,301
_21310
IAI47_21315: IAI47_21315 - hypothetical protein, at 517,302 to 517,640
_21315
IAI47_21320: IAI47_21320 - GTP-binding protein, at 517,762 to 518,991
_21320
Position (kb) 516
517
518 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 515.854 kb on + strand, within IAI47_21300 at 515.854 kb on + strand, within IAI47_21300 at 515.854 kb on + strand, within IAI47_21300 at 515.855 kb on - strand, within IAI47_21300 at 515.921 kb on + strand, within IAI47_21300 at 515.921 kb on + strand, within IAI47_21300 at 515.921 kb on + strand, within IAI47_21300 at 515.921 kb on + strand, within IAI47_21300 at 515.921 kb on + strand, within IAI47_21300 at 515.921 kb on + strand, within IAI47_21300 at 515.921 kb on + strand, within IAI47_21300 at 515.940 kb on + strand, within IAI47_21300 at 515.940 kb on + strand, within IAI47_21300 at 515.940 kb on + strand, within IAI47_21300 at 515.940 kb on + strand, within IAI47_21300 at 515.940 kb on + strand, within IAI47_21300 at 515.940 kb on + strand, within IAI47_21300 at 515.941 kb on - strand, within IAI47_21300 at 515.941 kb on - strand, within IAI47_21300 at 515.941 kb on - strand, within IAI47_21300 at 516.063 kb on + strand, within IAI47_21305 at 516.064 kb on - strand, within IAI47_21305 at 516.224 kb on + strand, within IAI47_21305 at 516.366 kb on + strand, within IAI47_21305 at 516.550 kb on + strand, within IAI47_21305 at 516.550 kb on + strand, within IAI47_21305 at 516.551 kb on - strand, within IAI47_21305 at 516.551 kb on - strand, within IAI47_21305 at 516.555 kb on + strand, within IAI47_21305 at 516.556 kb on - strand, within IAI47_21305 at 516.556 kb on - strand, within IAI47_21305 at 516.556 kb on - strand, within IAI47_21305 at 516.556 kb on - strand, within IAI47_21305 at 516.599 kb on + strand at 516.600 kb on - strand at 516.600 kb on - strand at 516.603 kb on + strand at 516.604 kb on - strand at 516.665 kb on + strand at 516.674 kb on - strand at 516.675 kb on + strand at 516.675 kb on + strand at 516.764 kb on + strand at 516.773 kb on + strand at 516.773 kb on + strand at 516.774 kb on - strand at 516.774 kb on - strand at 516.774 kb on - strand at 516.774 kb on - strand at 516.774 kb on - strand at 516.787 kb on + strand at 516.787 kb on + strand at 516.788 kb on - strand at 516.830 kb on - strand, within IAI47_21310 at 516.830 kb on - strand, within IAI47_21310 at 516.857 kb on + strand, within IAI47_21310 at 516.858 kb on - strand, within IAI47_21310 at 516.858 kb on - strand, within IAI47_21310 at 516.858 kb on - strand, within IAI47_21310 at 516.858 kb on - strand, within IAI47_21310 at 516.887 kb on + strand, within IAI47_21310 at 516.933 kb on - strand, within IAI47_21310 at 516.933 kb on - strand, within IAI47_21310 at 516.982 kb on + strand, within IAI47_21310 at 516.982 kb on + strand, within IAI47_21310 at 516.983 kb on - strand, within IAI47_21310 at 516.983 kb on - strand, within IAI47_21310 at 516.983 kb on - strand, within IAI47_21310 at 516.983 kb on - strand, within IAI47_21310 at 517.026 kb on + strand, within IAI47_21310 at 517.073 kb on + strand, within IAI47_21310 at 517.073 kb on + strand, within IAI47_21310 at 517.073 kb on + strand, within IAI47_21310 at 517.073 kb on + strand, within IAI47_21310 at 517.074 kb on - strand, within IAI47_21310 at 517.074 kb on - strand, within IAI47_21310 at 517.077 kb on + strand, within IAI47_21310 at 517.077 kb on + strand, within IAI47_21310 at 517.078 kb on - strand, within IAI47_21310 at 517.133 kb on + strand, within IAI47_21310 at 517.133 kb on + strand, within IAI47_21310 at 517.145 kb on + strand, within IAI47_21310 at 517.145 kb on + strand, within IAI47_21310 at 517.145 kb on + strand, within IAI47_21310 at 517.146 kb on - strand, within IAI47_21310 at 517.146 kb on - strand, within IAI47_21310 at 517.146 kb on - strand, within IAI47_21310 at 517.146 kb on - strand, within IAI47_21310 at 517.148 kb on + strand, within IAI47_21310 at 517.148 kb on + strand, within IAI47_21310 at 517.148 kb on + strand, within IAI47_21310 at 517.148 kb on + strand, within IAI47_21310 at 517.148 kb on + strand, within IAI47_21310 at 517.148 kb on + strand, within IAI47_21310 at 517.148 kb on + strand, within IAI47_21310 at 517.148 kb on + strand, within IAI47_21310 at 517.149 kb on - strand, within IAI47_21310 at 517.149 kb on - strand, within IAI47_21310 at 517.149 kb on - strand, within IAI47_21310 at 517.149 kb on - strand, within IAI47_21310 at 517.149 kb on - strand, within IAI47_21310 at 517.215 kb on + strand, within IAI47_21310 at 517.215 kb on + strand, within IAI47_21310 at 517.215 kb on + strand, within IAI47_21310 at 517.215 kb on + strand, within IAI47_21310 at 517.215 kb on + strand, within IAI47_21310 at 517.215 kb on + strand, within IAI47_21310 at 517.216 kb on - strand, within IAI47_21310 at 517.216 kb on - strand, within IAI47_21310 at 517.216 kb on - strand, within IAI47_21310 at 517.216 kb on - strand, within IAI47_21310 at 517.216 kb on - strand, within IAI47_21310 at 517.216 kb on - strand, within IAI47_21310 at 517.216 kb on - strand, within IAI47_21310 at 517.220 kb on + strand, within IAI47_21310 at 517.220 kb on + strand, within IAI47_21310 at 517.220 kb on + strand, within IAI47_21310 at 517.220 kb on + strand, within IAI47_21310 at 517.220 kb on + strand, within IAI47_21310 at 517.221 kb on - strand, within IAI47_21310 at 517.221 kb on - strand, within IAI47_21310 at 517.221 kb on - strand, within IAI47_21310 at 517.221 kb on - strand, within IAI47_21310 at 517.221 kb on - strand, within IAI47_21310 at 517.221 kb on - strand, within IAI47_21310 at 517.224 kb on + strand, within IAI47_21310 at 517.224 kb on + strand, within IAI47_21310 at 517.225 kb on - strand, within IAI47_21310 at 517.244 kb on + strand, within IAI47_21310 at 517.268 kb on + strand at 517.299 kb on + strand at 517.299 kb on + strand at 517.299 kb on + strand at 517.299 kb on + strand at 517.299 kb on + strand at 517.299 kb on + strand at 517.300 kb on - strand at 517.300 kb on - strand at 517.300 kb on - strand at 517.303 kb on + strand at 517.304 kb on - strand at 517.320 kb on + strand at 517.320 kb on + strand at 517.321 kb on - strand at 517.321 kb on - strand at 517.387 kb on + strand, within IAI47_21315 at 517.388 kb on - strand, within IAI47_21315 at 517.494 kb on + strand, within IAI47_21315 at 517.495 kb on - strand, within IAI47_21315 at 517.495 kb on - strand, within IAI47_21315 at 517.495 kb on - strand, within IAI47_21315 at 517.495 kb on - strand, within IAI47_21315 at 517.495 kb on - strand, within IAI47_21315 at 517.495 kb on - strand, within IAI47_21315 at 517.500 kb on + strand, within IAI47_21315 at 517.500 kb on + strand, within IAI47_21315 at 517.500 kb on + strand, within IAI47_21315 at 517.501 kb on - strand, within IAI47_21315 at 517.501 kb on - strand, within IAI47_21315 at 517.501 kb on - strand, within IAI47_21315 at 517.501 kb on - strand, within IAI47_21315 at 517.501 kb on - strand, within IAI47_21315 at 517.572 kb on + strand, within IAI47_21315 at 517.572 kb on + strand, within IAI47_21315 at 517.573 kb on - strand, within IAI47_21315 at 517.658 kb on - strand at 517.658 kb on - strand at 517.662 kb on - strand at 517.671 kb on - strand at 517.719 kb on + strand at 517.745 kb on + strand at 517.746 kb on - strand at 517.755 kb on + strand at 517.755 kb on + strand at 517.755 kb on + strand at 517.755 kb on + strand at 517.755 kb on + strand at 517.755 kb on + strand at 517.755 kb on + strand at 517.756 kb on - strand at 517.756 kb on - strand at 517.756 kb on - strand at 517.756 kb on - strand at 517.756 kb on - strand at 517.756 kb on - strand at 517.761 kb on + strand at 517.761 kb on + strand at 517.761 kb on + strand at 517.761 kb on + strand at 517.762 kb on - strand at 517.762 kb on - strand at 517.762 kb on - strand at 517.762 kb on - strand at 517.762 kb on - strand at 517.762 kb on - strand at 517.762 kb on - strand at 517.762 kb on - strand at 517.762 kb on - strand at 517.762 kb on - strand at 517.857 kb on + strand at 517.857 kb on + strand at 517.857 kb on + strand at 517.858 kb on - strand at 517.858 kb on - strand at 517.863 kb on + strand at 517.863 kb on + strand at 517.863 kb on + strand at 517.863 kb on + strand at 517.864 kb on - strand at 517.864 kb on - strand at 517.904 kb on - strand, within IAI47_21320 at 517.905 kb on + strand, within IAI47_21320 at 517.905 kb on + strand, within IAI47_21320 at 517.905 kb on + strand, within IAI47_21320 at 517.905 kb on + strand, within IAI47_21320 at 517.905 kb on + strand, within IAI47_21320 at 517.905 kb on + strand, within IAI47_21320 at 517.905 kb on + strand, within IAI47_21320 at 517.905 kb on + strand, within IAI47_21320 at 517.905 kb on + strand, within IAI47_21320 at 517.905 kb on + strand, within IAI47_21320 at 517.905 kb on + strand, within IAI47_21320 at 517.906 kb on - strand, within IAI47_21320 at 517.906 kb on - strand, within IAI47_21320 at 517.906 kb on - strand, within IAI47_21320 at 517.906 kb on - strand, within IAI47_21320 at 517.918 kb on - strand, within IAI47_21320 at 517.965 kb on + strand, within IAI47_21320 at 517.966 kb on - strand, within IAI47_21320 at 518.079 kb on - strand, within IAI47_21320 at 518.127 kb on + strand, within IAI47_21320 at 518.128 kb on - strand, within IAI47_21320 at 518.128 kb on - strand, within IAI47_21320 at 518.128 kb on - strand, within IAI47_21320 at 518.164 kb on + strand, within IAI47_21320 at 518.165 kb on - strand, within IAI47_21320 at 518.165 kb on - strand, within IAI47_21320 at 518.165 kb on - strand, within IAI47_21320 at 518.165 kb on - strand, within IAI47_21320 at 518.165 kb on - strand, within IAI47_21320 at 518.178 kb on + strand, within IAI47_21320 at 518.178 kb on + strand, within IAI47_21320 at 518.195 kb on + strand, within IAI47_21320 at 518.196 kb on - strand, within IAI47_21320 at 518.221 kb on + strand, within IAI47_21320 at 518.221 kb on + strand, within IAI47_21320 at 518.222 kb on - strand, within IAI47_21320 at 518.274 kb on + strand, within IAI47_21320 at 518.294 kb on + strand, within IAI47_21320 at 518.294 kb on + strand, within IAI47_21320 at 518.295 kb on - strand, within IAI47_21320 at 518.295 kb on - strand, within IAI47_21320 at 518.300 kb on + strand, within IAI47_21320 at 518.301 kb on - strand, within IAI47_21320
Per-strain Table
Position Strand Gene LocusTag Fraction Defined media, anaerobic, with FW301 groundwater remove 515,854 + IAI47_21300 0.62 +0.4 515,854 + IAI47_21300 0.62 +0.1 515,854 + IAI47_21300 0.62 -0.4 515,855 - IAI47_21300 0.62 +0.9 515,921 + IAI47_21300 0.83 -1.0 515,921 + IAI47_21300 0.83 -0.3 515,921 + IAI47_21300 0.83 -0.1 515,921 + IAI47_21300 0.83 -0.9 515,921 + IAI47_21300 0.83 +0.1 515,921 + IAI47_21300 0.83 -0.5 515,921 + IAI47_21300 0.83 -0.9 515,940 + IAI47_21300 0.89 -0.5 515,940 + IAI47_21300 0.89 +0.6 515,940 + IAI47_21300 0.89 -0.5 515,940 + IAI47_21300 0.89 +0.1 515,940 + IAI47_21300 0.89 +0.5 515,940 + IAI47_21300 0.89 -0.1 515,941 - IAI47_21300 0.89 -1.2 515,941 - IAI47_21300 0.89 -0.6 515,941 - IAI47_21300 0.89 -0.7 516,063 + IAI47_21305 0.13 +0.2 516,064 - IAI47_21305 0.14 -1.4 516,224 + IAI47_21305 0.38 -0.5 516,366 + IAI47_21305 0.59 +0.4 516,550 + IAI47_21305 0.86 +0.2 516,550 + IAI47_21305 0.86 +2.6 516,551 - IAI47_21305 0.86 -0.3 516,551 - IAI47_21305 0.86 +0.6 516,555 + IAI47_21305 0.87 +0.1 516,556 - IAI47_21305 0.87 +0.5 516,556 - IAI47_21305 0.87 -0.5 516,556 - IAI47_21305 0.87 -0.8 516,556 - IAI47_21305 0.87 +1.2 516,599 + -0.6 516,600 - -1.0 516,600 - -0.5 516,603 + +0.0 516,604 - -0.3 516,665 + -0.0 516,674 - -0.5 516,675 + +0.0 516,675 + -0.6 516,764 + -0.2 516,773 + -0.1 516,773 + +0.3 516,774 - -0.1 516,774 - -1.7 516,774 - -0.7 516,774 - -1.3 516,774 - -0.4 516,787 + -1.6 516,787 + -1.4 516,788 - +0.8 516,830 - IAI47_21310 0.14 +0.4 516,830 - IAI47_21310 0.14 -1.3 516,857 + IAI47_21310 0.19 -0.8 516,858 - IAI47_21310 0.19 -1.7 516,858 - IAI47_21310 0.19 -1.2 516,858 - IAI47_21310 0.19 +0.2 516,858 - IAI47_21310 0.19 -1.2 516,887 + IAI47_21310 0.24 -1.3 516,933 - IAI47_21310 0.33 -2.9 516,933 - IAI47_21310 0.33 +0.8 516,982 + IAI47_21310 0.42 -0.6 516,982 + IAI47_21310 0.42 -1.8 516,983 - IAI47_21310 0.42 +0.4 516,983 - IAI47_21310 0.42 +0.1 516,983 - IAI47_21310 0.42 -0.8 516,983 - IAI47_21310 0.42 -0.6 517,026 + IAI47_21310 0.50 -1.1 517,073 + IAI47_21310 0.58 -0.8 517,073 + IAI47_21310 0.58 +0.2 517,073 + IAI47_21310 0.58 -2.0 517,073 + IAI47_21310 0.58 +0.0 517,074 - IAI47_21310 0.58 -1.0 517,074 - IAI47_21310 0.58 -1.5 517,077 + IAI47_21310 0.59 -0.3 517,077 + IAI47_21310 0.59 -0.8 517,078 - IAI47_21310 0.59 -1.2 517,133 + IAI47_21310 0.69 +0.1 517,133 + IAI47_21310 0.69 +0.3 517,145 + IAI47_21310 0.71 +0.2 517,145 + IAI47_21310 0.71 -0.3 517,145 + IAI47_21310 0.71 -0.4 517,146 - IAI47_21310 0.72 -1.4 517,146 - IAI47_21310 0.72 -0.5 517,146 - IAI47_21310 0.72 -0.3 517,146 - IAI47_21310 0.72 +1.1 517,148 + IAI47_21310 0.72 -1.1 517,148 + IAI47_21310 0.72 -0.1 517,148 + IAI47_21310 0.72 -0.6 517,148 + IAI47_21310 0.72 -2.3 517,148 + IAI47_21310 0.72 -1.7 517,148 + IAI47_21310 0.72 -0.9 517,148 + IAI47_21310 0.72 +0.5 517,148 + IAI47_21310 0.72 -1.2 517,149 - IAI47_21310 0.72 -2.9 517,149 - IAI47_21310 0.72 -0.5 517,149 - IAI47_21310 0.72 -0.9 517,149 - IAI47_21310 0.72 +1.1 517,149 - IAI47_21310 0.72 +2.0 517,215 + IAI47_21310 0.84 -1.7 517,215 + IAI47_21310 0.84 -1.6 517,215 + IAI47_21310 0.84 -1.0 517,215 + IAI47_21310 0.84 -1.6 517,215 + IAI47_21310 0.84 -0.8 517,215 + IAI47_21310 0.84 +0.3 517,216 - IAI47_21310 0.84 -1.0 517,216 - IAI47_21310 0.84 +0.2 517,216 - IAI47_21310 0.84 -0.5 517,216 - IAI47_21310 0.84 -0.1 517,216 - IAI47_21310 0.84 +0.6 517,216 - IAI47_21310 0.84 -1.2 517,216 - IAI47_21310 0.84 -0.2 517,220 + IAI47_21310 0.85 -0.5 517,220 + IAI47_21310 0.85 -1.1 517,220 + IAI47_21310 0.85 -0.3 517,220 + IAI47_21310 0.85 -1.1 517,220 + IAI47_21310 0.85 -0.2 517,221 - IAI47_21310 0.85 -1.0 517,221 - IAI47_21310 0.85 +0.1 517,221 - IAI47_21310 0.85 -1.7 517,221 - IAI47_21310 0.85 -0.6 517,221 - IAI47_21310 0.85 -1.2 517,221 - IAI47_21310 0.85 +0.1 517,224 + IAI47_21310 0.86 +0.5 517,224 + IAI47_21310 0.86 +0.2 517,225 - IAI47_21310 0.86 -1.1 517,244 + IAI47_21310 0.89 -0.7 517,268 + +0.1 517,299 + -0.4 517,299 + +0.7 517,299 + -0.1 517,299 + -0.6 517,299 + -1.0 517,299 + -0.5 517,300 - +0.3 517,300 - -0.5 517,300 - +0.2 517,303 + -0.2 517,304 - +0.5 517,320 + -2.8 517,320 + -0.6 517,321 - -0.8 517,321 - -1.5 517,387 + IAI47_21315 0.25 -0.5 517,388 - IAI47_21315 0.25 -0.2 517,494 + IAI47_21315 0.57 +0.7 517,495 - IAI47_21315 0.57 -0.4 517,495 - IAI47_21315 0.57 +0.5 517,495 - IAI47_21315 0.57 -0.2 517,495 - IAI47_21315 0.57 -0.4 517,495 - IAI47_21315 0.57 +0.0 517,495 - IAI47_21315 0.57 -0.1 517,500 + IAI47_21315 0.58 +1.1 517,500 + IAI47_21315 0.58 +0.5 517,500 + IAI47_21315 0.58 -0.0 517,501 - IAI47_21315 0.59 -0.0 517,501 - IAI47_21315 0.59 -1.0 517,501 - IAI47_21315 0.59 +0.2 517,501 - IAI47_21315 0.59 -1.6 517,501 - IAI47_21315 0.59 -0.4 517,572 + IAI47_21315 0.80 +0.1 517,572 + IAI47_21315 0.80 +0.7 517,573 - IAI47_21315 0.80 +0.2 517,658 - +0.4 517,658 - -0.2 517,662 - +0.1 517,671 - -1.2 517,719 + +3.1 517,745 + +0.1 517,746 - +0.4 517,755 + +1.2 517,755 + -1.0 517,755 + +0.6 517,755 + -1.1 517,755 + +0.7 517,755 + -0.8 517,755 + -0.6 517,756 - +0.8 517,756 - +1.4 517,756 - -0.2 517,756 - -0.1 517,756 - +0.4 517,756 - -1.1 517,761 + -0.5 517,761 + +0.8 517,761 + -1.6 517,761 + +0.1 517,762 - +0.1 517,762 - -0.0 517,762 - -0.3 517,762 - -0.4 517,762 - +0.5 517,762 - -0.8 517,762 - +0.4 517,762 - -0.0 517,762 - +0.1 517,762 - -1.2 517,857 + -0.5 517,857 + +1.3 517,857 + +0.2 517,858 - -0.6 517,858 - -1.3 517,863 + -0.4 517,863 + +1.5 517,863 + +0.6 517,863 + -0.7 517,864 - +0.8 517,864 - +0.1 517,904 - IAI47_21320 0.12 -0.6 517,905 + IAI47_21320 0.12 +0.2 517,905 + IAI47_21320 0.12 -0.3 517,905 + IAI47_21320 0.12 +0.0 517,905 + IAI47_21320 0.12 +1.0 517,905 + IAI47_21320 0.12 +0.5 517,905 + IAI47_21320 0.12 -0.3 517,905 + IAI47_21320 0.12 -1.0 517,905 + IAI47_21320 0.12 -1.1 517,905 + IAI47_21320 0.12 -2.3 517,905 + IAI47_21320 0.12 +0.0 517,905 + IAI47_21320 0.12 -0.7 517,906 - IAI47_21320 0.12 -2.0 517,906 - IAI47_21320 0.12 +1.4 517,906 - IAI47_21320 0.12 -1.0 517,906 - IAI47_21320 0.12 +0.2 517,918 - IAI47_21320 0.13 +0.0 517,965 + IAI47_21320 0.17 -1.0 517,966 - IAI47_21320 0.17 +0.9 518,079 - IAI47_21320 0.26 +0.1 518,127 + IAI47_21320 0.30 -0.1 518,128 - IAI47_21320 0.30 +0.3 518,128 - IAI47_21320 0.30 -1.0 518,128 - IAI47_21320 0.30 -0.8 518,164 + IAI47_21320 0.33 -0.4 518,165 - IAI47_21320 0.33 -1.7 518,165 - IAI47_21320 0.33 +0.1 518,165 - IAI47_21320 0.33 -0.4 518,165 - IAI47_21320 0.33 -0.9 518,165 - IAI47_21320 0.33 -0.5 518,178 + IAI47_21320 0.34 -1.4 518,178 + IAI47_21320 0.34 +0.5 518,195 + IAI47_21320 0.35 +0.7 518,196 - IAI47_21320 0.35 +0.0 518,221 + IAI47_21320 0.37 +1.2 518,221 + IAI47_21320 0.37 +0.6 518,222 - IAI47_21320 0.37 -0.4 518,274 + IAI47_21320 0.42 +2.6 518,294 + IAI47_21320 0.43 +0.1 518,294 + IAI47_21320 0.43 +0.5 518,295 - IAI47_21320 0.43 -0.3 518,295 - IAI47_21320 0.43 -0.5 518,300 + IAI47_21320 0.44 +1.3 518,301 - IAI47_21320 0.44 -0.2
Or see this region's nucleotide sequence