Strain Fitness in Pantoea sp. MT58 around IAI47_14390

Experiment: Defined media, anaerobic, with FW301 groundwater

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Defined media, anaerobic, with FW301 groundwater
3,037,768	-				+0.7
3,037,779	+				-0.2
3,037,779	+				-1.0
3,037,779	+				+0.3
3,037,779	+				+0.1
3,037,780	-				+0.3
3,037,780	-				+0.4
3,037,780	-				+0.0
3,037,782	+				-1.5
3,037,782	+				+0.2
3,037,782	+				-0.1
3,037,782	+				-0.5
3,037,783	-				-0.7
3,037,783	-				+0.4
3,037,792	+				-2.1
3,037,842	+				-0.2
3,037,842	+				-0.3
3,037,842	+				-1.0
3,037,842	+				-1.7
3,037,842	+				+0.6
3,037,842	+				+0.4
3,037,842	+				+0.6
3,037,842	+				+0.4
3,037,843	-				-1.4
3,037,843	-				+0.6
3,037,843	-				+0.5
3,037,843	-				+0.8
3,037,843	-				-0.0
3,037,848	+				+0.8
3,037,848	+				+0.1
3,037,848	+				-0.8
3,037,848	+				-0.0
3,037,848	+				-0.3
3,037,848	+				+1.0
3,037,849	-				-0.0
3,037,849	-				-0.5
3,037,849	-				+0.8
3,037,849	-				+0.3
3,037,849	-				+0.8
3,037,849	-				+0.8
3,037,849	-				+0.6
3,037,849	-				-1.6
3,037,849	-				-0.5
3,037,854	+				+0.3
3,037,854	+				-1.7
3,037,854	+				-0.0
3,037,869	+				+0.3
3,037,883	+				+1.5
3,037,903	-				+0.6
3,037,903	-				-0.1
3,037,951	+		IAI47_14385	0.12	-0.2
3,037,953	+		IAI47_14385	0.12	-0.6
3,037,953	+		IAI47_14385	0.12	-0.8
3,037,953	+		IAI47_14385	0.12	-2.2
3,037,953	+		IAI47_14385	0.12	-0.7
3,037,953	+		IAI47_14385	0.12	+0.2
3,037,953	+		IAI47_14385	0.12	+1.2
3,037,953	+		IAI47_14385	0.12	+0.2
3,037,954	-		IAI47_14385	0.12	+0.5
3,037,954	-		IAI47_14385	0.12	-1.5
3,037,954	-		IAI47_14385	0.12	-0.0
3,037,954	-		IAI47_14385	0.12	-0.4
3,037,976	+		IAI47_14385	0.15	+0.6
3,037,976	+		IAI47_14385	0.15	-0.4
3,037,976	+		IAI47_14385	0.15	-1.8
3,037,976	+		IAI47_14385	0.15	-1.1
3,037,976	+		IAI47_14385	0.15	+0.5
3,037,977	-		IAI47_14385	0.15	-0.7
3,037,977	-		IAI47_14385	0.15	+0.7
3,037,977	-		IAI47_14385	0.15	+1.7
3,037,977	-		IAI47_14385	0.15	+0.1
3,037,977	-		IAI47_14385	0.15	+0.2
3,037,986	-		IAI47_14385	0.16	-0.4
3,037,986	-		IAI47_14385	0.16	+1.7
3,037,986	-		IAI47_14385	0.16	-0.7
3,037,986	-		IAI47_14385	0.16	+0.4
3,038,013	+		IAI47_14385	0.19	-0.0
3,038,014	-		IAI47_14385	0.19	+0.2
3,038,014	-		IAI47_14385	0.19	+0.6
3,038,037	-		IAI47_14385	0.21	+0.5
3,038,037	-		IAI47_14385	0.21	+0.4
3,038,067	+		IAI47_14385	0.24	-0.4
3,038,068	-		IAI47_14385	0.25	-0.7
3,038,106	+		IAI47_14385	0.29	+0.5
3,038,107	-		IAI47_14385	0.29	+0.6
3,038,107	-		IAI47_14385	0.29	+0.9
3,038,107	-		IAI47_14385	0.29	-1.2
3,038,137	+		IAI47_14385	0.32	+1.3
3,038,138	-		IAI47_14385	0.32	+1.0
3,038,138	-		IAI47_14385	0.32	-0.2
3,038,193	+		IAI47_14385	0.38	+0.4
3,038,193	+		IAI47_14385	0.38	+0.0
3,038,193	+		IAI47_14385	0.38	-0.3
3,038,193	+		IAI47_14385	0.38	+0.3
3,038,193	+		IAI47_14385	0.38	-0.6
3,038,194	-		IAI47_14385	0.38	+0.2
3,038,194	-		IAI47_14385	0.38	-0.1
3,038,194	-		IAI47_14385	0.38	-0.5
3,038,194	-		IAI47_14385	0.38	-1.4
3,038,195	-		IAI47_14385	0.38	+0.4
3,038,208	+		IAI47_14385	0.40	-1.6
3,038,208	+		IAI47_14385	0.40	-1.5
3,038,208	+		IAI47_14385	0.40	-0.5
3,038,209	-		IAI47_14385	0.40	+0.0
3,038,209	-		IAI47_14385	0.40	+0.3
3,038,209	-		IAI47_14385	0.40	+0.6
3,038,209	-		IAI47_14385	0.40	-0.7
3,038,298	+		IAI47_14385	0.50	-0.4
3,038,298	+		IAI47_14385	0.50	-0.2
3,038,298	+		IAI47_14385	0.50	-0.3
3,038,298	+		IAI47_14385	0.50	-0.2
3,038,417	+		IAI47_14385	0.63	-1.5
3,038,417	+		IAI47_14385	0.63	-0.3
3,038,418	-		IAI47_14385	0.63	+0.3
3,038,418	-		IAI47_14385	0.63	+0.4
3,038,418	-		IAI47_14385	0.63	-0.9
3,038,470	-		IAI47_14385	0.69	+0.5
3,038,470	-		IAI47_14385	0.69	+0.9
3,038,487	+		IAI47_14385	0.70	+0.3
3,038,487	+		IAI47_14385	0.70	+0.6
3,038,487	+		IAI47_14385	0.70	-1.6
3,038,487	+		IAI47_14385	0.70	-0.5
3,038,487	+		IAI47_14385	0.70	-0.0
3,038,487	+		IAI47_14385	0.70	-0.0
3,038,488	-		IAI47_14385	0.70	+1.1
3,038,488	-		IAI47_14385	0.70	+1.3
3,038,488	-		IAI47_14385	0.70	+1.0
3,038,488	-		IAI47_14385	0.70	-0.9
3,038,488	-		IAI47_14385	0.70	-0.1
3,038,488	-		IAI47_14385	0.70	-0.2
3,038,488	-		IAI47_14385	0.70	-2.4
3,038,488	-		IAI47_14385	0.70	+0.0
3,038,488	-		IAI47_14385	0.70	-0.1
3,038,541	+		IAI47_14385	0.76	+0.2
3,038,541	+		IAI47_14385	0.76	+0.2
3,038,541	+		IAI47_14385	0.76	+2.2
3,038,541	+		IAI47_14385	0.76	+0.2
3,038,541	+		IAI47_14385	0.76	-0.6
3,038,542	-		IAI47_14385	0.76	+0.4
3,038,583	+		IAI47_14385	0.81	+0.0
3,038,584	-		IAI47_14385	0.81	-0.4
3,038,599	+		IAI47_14385	0.83	-0.3
3,038,599	+		IAI47_14385	0.83	+0.3
3,038,600	-		IAI47_14385	0.83	-0.1
3,038,600	-		IAI47_14385	0.83	-0.1
3,038,617	+		IAI47_14385	0.85	-0.1
3,038,617	+		IAI47_14385	0.85	+0.2
3,038,618	-		IAI47_14385	0.85	+1.4
3,038,652	+		IAI47_14385	0.88	-1.5
3,038,652	+		IAI47_14385	0.88	+0.2
3,038,653	-		IAI47_14385	0.89	-1.7
3,038,772	-				+0.2
3,038,812	+		IAI47_14390	0.12	-2.6
3,038,812	+		IAI47_14390	0.12	-0.2
3,038,813	-		IAI47_14390	0.13	+0.2
3,038,813	-		IAI47_14390	0.13	+1.0
3,038,813	-		IAI47_14390	0.13	+0.5
3,038,813	-		IAI47_14390	0.13	+0.2
3,038,847	+		IAI47_14390	0.20	+1.6
3,038,848	-		IAI47_14390	0.20	+0.1
3,038,877	-		IAI47_14390	0.27	+0.3
3,038,970	+		IAI47_14390	0.48	-0.0
3,039,053	+		IAI47_14390	0.66	-1.0
3,039,053	+		IAI47_14390	0.66	-0.1
3,039,053	+		IAI47_14390	0.66	-0.9
3,039,053	+		IAI47_14390	0.66	+0.1
3,039,053	+		IAI47_14390	0.66	+1.2
3,039,054	-		IAI47_14390	0.66	+0.1
3,039,054	-		IAI47_14390	0.66	+1.2
3,039,054	-		IAI47_14390	0.66	-0.5
3,039,054	-		IAI47_14390	0.66	-2.2
3,039,054	-		IAI47_14390	0.66	-0.4
3,039,188	+				+0.1
3,039,189	-				+0.3
3,039,223	+				-0.3
3,039,224	-				-0.4
3,039,298	+		IAI47_14395	0.26	-0.0
3,039,299	-		IAI47_14395	0.27	-0.2
3,039,299	-		IAI47_14395	0.27	-0.2
3,039,299	-		IAI47_14395	0.27	-0.0
3,039,299	-		IAI47_14395	0.27	-3.1
3,039,446	+		IAI47_14395	0.63	+0.9
3,039,446	+		IAI47_14395	0.63	+0.1
3,039,447	-		IAI47_14395	0.63	+0.1
3,039,447	-		IAI47_14395	0.63	-0.0
3,039,447	-		IAI47_14395	0.63	+1.0
3,039,455	+		IAI47_14395	0.65	-0.1
3,039,455	+		IAI47_14395	0.65	+0.1
3,039,456	-		IAI47_14395	0.65	-1.5
3,039,456	-		IAI47_14395	0.65	+0.6
3,039,456	-		IAI47_14395	0.65	-0.5
3,039,456	-		IAI47_14395	0.65	+0.5
3,039,456	-		IAI47_14395	0.65	+1.8
3,039,478	+		IAI47_14395	0.71	-0.0
3,039,479	-		IAI47_14395	0.71	-0.2
3,039,479	-		IAI47_14395	0.71	-0.0
3,039,480	+		IAI47_14395	0.71	-0.1
3,039,480	+		IAI47_14395	0.71	-0.6
3,039,480	+		IAI47_14395	0.71	-0.4
3,039,480	+		IAI47_14395	0.71	+0.6
3,039,480	+		IAI47_14395	0.71	-0.1
3,039,480	+		IAI47_14395	0.71	+0.9
3,039,481	-		IAI47_14395	0.72	-0.5
3,039,481	-		IAI47_14395	0.72	+0.0
3,039,481	-		IAI47_14395	0.72	-0.9
3,039,481	-		IAI47_14395	0.72	+0.1
3,039,481	-		IAI47_14395	0.72	-0.1
3,039,481	-		IAI47_14395	0.72	-0.1
3,039,481	-		IAI47_14395	0.72	+0.4
3,039,481	-		IAI47_14395	0.72	+0.4
3,039,490	-		IAI47_14395	0.74	+0.2
3,039,537	+		IAI47_14395	0.85	-0.5
3,039,637	+				-0.9
3,039,637	+				+0.1
3,039,637	+				+1.4
3,039,637	+				+0.5
3,039,638	-				-1.2
3,039,638	-				-2.0
3,039,638	-				+0.2
3,039,638	-				-2.3
3,039,638	-				-1.7
3,039,677	-				+0.3
3,039,692	+				+0.8
3,039,692	+				-0.1
3,039,692	+				+0.0
3,039,692	+				+0.7
3,039,693	-				-1.0
3,039,693	-				-0.2
3,039,693	-				-0.2
3,039,693	-				-1.2
3,039,693	-				-1.7
3,039,693	-				-2.2
3,039,704	+				-0.1
3,039,704	+				-1.1
3,039,704	+				+0.4
3,039,704	+				-0.5
3,039,704	+				-0.8
3,039,704	+				-1.7
3,039,704	+				-1.0
3,039,705	-				-0.9
3,039,727	+				-1.0
3,039,727	+				-0.6
3,039,728	-				-0.3
3,039,728	-				-1.3
3,039,854	+				-2.0
3,039,855	-				-0.9
3,040,001	+		IAI47_14400	0.12	-0.7
3,040,001	+		IAI47_14400	0.12	-1.0
3,040,002	-		IAI47_14400	0.12	-1.8
3,040,002	-		IAI47_14400	0.12	+0.0
3,040,150	+		IAI47_14400	0.18	-0.4
3,040,151	-		IAI47_14400	0.18	-1.1
3,040,151	-		IAI47_14400	0.18	-0.5
3,040,151	-		IAI47_14400	0.18	-2.4
3,040,151	-		IAI47_14400	0.18	-1.4