Experiment: Defined media, anaerobic, with FW301 groundwater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02645 and IAI47_02650 are separated by 159 nucleotides IAI47_02650 and IAI47_02655 are separated by 49 nucleotides IAI47_02655 and IAI47_02660 are separated by 404 nucleotides
IAI47_02645: IAI47_02645 - Cache 3/Cache 2 fusion domain-containing protein, at 548,363 to 550,294
_02645
IAI47_02650: IAI47_02650 - esterase, at 550,454 to 551,203
_02650
IAI47_02655: IAI47_02655 - hypothetical protein, at 551,253 to 551,459
_02655
IAI47_02660: IAI47_02660 - 30S ribosomal protein S6, at 551,864 to 552,259
_02660
Position (kb) 550
551
552 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 549.472 kb on + strand, within IAI47_02645 at 549.472 kb on + strand, within IAI47_02645 at 549.472 kb on + strand, within IAI47_02645 at 549.472 kb on + strand, within IAI47_02645 at 549.473 kb on - strand, within IAI47_02645 at 549.473 kb on - strand, within IAI47_02645 at 549.473 kb on - strand, within IAI47_02645 at 549.555 kb on + strand, within IAI47_02645 at 549.555 kb on + strand, within IAI47_02645 at 549.555 kb on + strand, within IAI47_02645 at 549.555 kb on + strand, within IAI47_02645 at 549.555 kb on + strand, within IAI47_02645 at 549.555 kb on + strand, within IAI47_02645 at 549.555 kb on + strand, within IAI47_02645 at 549.556 kb on - strand, within IAI47_02645 at 549.556 kb on - strand, within IAI47_02645 at 549.556 kb on - strand, within IAI47_02645 at 549.556 kb on - strand, within IAI47_02645 at 549.556 kb on - strand, within IAI47_02645 at 549.556 kb on - strand, within IAI47_02645 at 549.557 kb on - strand, within IAI47_02645 at 549.620 kb on - strand, within IAI47_02645 at 549.620 kb on - strand, within IAI47_02645 at 549.620 kb on - strand, within IAI47_02645 at 549.620 kb on - strand, within IAI47_02645 at 549.620 kb on - strand, within IAI47_02645 at 549.651 kb on + strand, within IAI47_02645 at 549.651 kb on + strand, within IAI47_02645 at 549.651 kb on + strand, within IAI47_02645 at 549.651 kb on + strand, within IAI47_02645 at 549.652 kb on - strand, within IAI47_02645 at 549.652 kb on - strand, within IAI47_02645 at 549.652 kb on - strand, within IAI47_02645 at 549.652 kb on - strand, within IAI47_02645 at 549.652 kb on - strand, within IAI47_02645 at 549.664 kb on + strand, within IAI47_02645 at 549.665 kb on - strand, within IAI47_02645 at 549.665 kb on - strand, within IAI47_02645 at 549.665 kb on - strand, within IAI47_02645 at 549.665 kb on - strand, within IAI47_02645 at 549.713 kb on + strand, within IAI47_02645 at 549.723 kb on + strand, within IAI47_02645 at 549.723 kb on + strand, within IAI47_02645 at 549.723 kb on + strand, within IAI47_02645 at 549.724 kb on - strand, within IAI47_02645 at 549.724 kb on - strand, within IAI47_02645 at 549.724 kb on - strand, within IAI47_02645 at 549.733 kb on + strand, within IAI47_02645 at 549.733 kb on + strand, within IAI47_02645 at 549.733 kb on + strand, within IAI47_02645 at 549.734 kb on - strand, within IAI47_02645 at 549.734 kb on - strand, within IAI47_02645 at 549.734 kb on - strand, within IAI47_02645 at 549.735 kb on + strand, within IAI47_02645 at 549.735 kb on + strand, within IAI47_02645 at 549.735 kb on + strand, within IAI47_02645 at 549.735 kb on + strand, within IAI47_02645 at 549.735 kb on + strand, within IAI47_02645 at 549.735 kb on + strand, within IAI47_02645 at 549.736 kb on - strand, within IAI47_02645 at 549.736 kb on - strand, within IAI47_02645 at 549.736 kb on - strand, within IAI47_02645 at 549.736 kb on - strand, within IAI47_02645 at 549.736 kb on - strand, within IAI47_02645 at 549.736 kb on - strand, within IAI47_02645 at 549.768 kb on + strand, within IAI47_02645 at 550.033 kb on + strand, within IAI47_02645 at 550.033 kb on + strand, within IAI47_02645 at 550.042 kb on + strand, within IAI47_02645 at 550.057 kb on + strand, within IAI47_02645 at 550.058 kb on - strand, within IAI47_02645 at 550.058 kb on - strand, within IAI47_02645 at 550.069 kb on + strand, within IAI47_02645 at 550.070 kb on - strand, within IAI47_02645 at 550.071 kb on + strand, within IAI47_02645 at 550.071 kb on + strand, within IAI47_02645 at 550.071 kb on + strand, within IAI47_02645 at 550.071 kb on + strand, within IAI47_02645 at 550.071 kb on + strand, within IAI47_02645 at 550.072 kb on - strand, within IAI47_02645 at 550.072 kb on - strand, within IAI47_02645 at 550.072 kb on - strand, within IAI47_02645 at 550.072 kb on - strand, within IAI47_02645 at 550.102 kb on + strand at 550.102 kb on + strand at 550.103 kb on - strand at 550.103 kb on - strand at 550.108 kb on + strand at 550.108 kb on + strand at 550.108 kb on + strand at 550.108 kb on + strand at 550.108 kb on + strand at 550.109 kb on - strand at 550.109 kb on - strand at 550.109 kb on - strand at 550.109 kb on - strand at 550.109 kb on - strand at 550.244 kb on + strand at 550.244 kb on + strand at 550.245 kb on - strand at 550.245 kb on - strand at 550.245 kb on - strand at 550.255 kb on + strand at 550.255 kb on + strand at 550.256 kb on - strand at 550.256 kb on - strand at 550.256 kb on - strand at 550.256 kb on - strand at 550.256 kb on - strand at 550.294 kb on + strand at 550.299 kb on + strand at 550.300 kb on - strand at 550.300 kb on - strand at 550.314 kb on + strand at 550.322 kb on + strand at 550.323 kb on - strand at 550.323 kb on - strand at 550.323 kb on - strand at 550.365 kb on + strand at 550.365 kb on + strand at 550.365 kb on + strand at 550.366 kb on - strand at 550.366 kb on - strand at 550.366 kb on - strand at 550.373 kb on + strand at 550.373 kb on + strand at 550.374 kb on - strand at 550.374 kb on - strand at 550.374 kb on - strand at 550.374 kb on - strand at 550.374 kb on - strand at 550.468 kb on + strand at 550.468 kb on + strand at 550.468 kb on + strand at 550.550 kb on + strand, within IAI47_02650 at 550.550 kb on + strand, within IAI47_02650 at 550.550 kb on + strand, within IAI47_02650 at 550.551 kb on - strand, within IAI47_02650 at 550.561 kb on + strand, within IAI47_02650 at 550.562 kb on - strand, within IAI47_02650 at 550.580 kb on + strand, within IAI47_02650 at 550.580 kb on + strand, within IAI47_02650 at 550.580 kb on + strand, within IAI47_02650 at 550.580 kb on + strand, within IAI47_02650 at 550.581 kb on - strand, within IAI47_02650 at 550.581 kb on - strand, within IAI47_02650 at 550.659 kb on - strand, within IAI47_02650 at 550.659 kb on - strand, within IAI47_02650 at 550.750 kb on + strand, within IAI47_02650 at 550.751 kb on - strand, within IAI47_02650 at 550.861 kb on + strand, within IAI47_02650 at 550.861 kb on + strand, within IAI47_02650 at 550.861 kb on + strand, within IAI47_02650 at 550.861 kb on + strand, within IAI47_02650 at 550.862 kb on - strand, within IAI47_02650 at 550.862 kb on - strand, within IAI47_02650 at 550.862 kb on - strand, within IAI47_02650 at 550.878 kb on - strand, within IAI47_02650 at 550.882 kb on + strand, within IAI47_02650 at 550.883 kb on - strand, within IAI47_02650 at 550.883 kb on - strand, within IAI47_02650 at 550.925 kb on - strand, within IAI47_02650 at 550.925 kb on - strand, within IAI47_02650 at 550.957 kb on + strand, within IAI47_02650 at 550.958 kb on - strand, within IAI47_02650 at 550.976 kb on + strand, within IAI47_02650 at 550.976 kb on + strand, within IAI47_02650 at 550.976 kb on + strand, within IAI47_02650 at 550.976 kb on + strand, within IAI47_02650 at 550.976 kb on + strand, within IAI47_02650 at 550.976 kb on + strand, within IAI47_02650 at 550.976 kb on + strand, within IAI47_02650 at 550.976 kb on + strand, within IAI47_02650 at 550.976 kb on + strand, within IAI47_02650 at 550.977 kb on - strand, within IAI47_02650 at 550.977 kb on - strand, within IAI47_02650 at 550.977 kb on - strand, within IAI47_02650 at 550.977 kb on - strand, within IAI47_02650 at 550.977 kb on - strand, within IAI47_02650 at 550.977 kb on - strand, within IAI47_02650 at 551.019 kb on + strand, within IAI47_02650 at 551.146 kb on + strand at 551.146 kb on + strand at 551.146 kb on + strand at 551.146 kb on + strand at 551.146 kb on + strand at 551.147 kb on - strand at 551.201 kb on + strand at 551.202 kb on - strand at 551.202 kb on - strand at 551.202 kb on - strand at 551.202 kb on - strand at 551.205 kb on + strand at 551.205 kb on + strand at 551.205 kb on + strand at 551.205 kb on + strand at 551.206 kb on - strand at 551.206 kb on - strand at 551.206 kb on - strand at 551.206 kb on - strand at 551.206 kb on - strand at 551.239 kb on - strand at 551.244 kb on + strand at 551.245 kb on - strand at 551.254 kb on + strand at 551.254 kb on + strand at 551.254 kb on + strand at 551.255 kb on - strand at 551.318 kb on + strand, within IAI47_02655 at 551.318 kb on + strand, within IAI47_02655 at 551.319 kb on - strand, within IAI47_02655 at 551.335 kb on + strand, within IAI47_02655 at 551.335 kb on + strand, within IAI47_02655 at 551.335 kb on + strand, within IAI47_02655 at 551.336 kb on - strand, within IAI47_02655 at 551.336 kb on - strand, within IAI47_02655 at 551.336 kb on - strand, within IAI47_02655 at 551.336 kb on - strand, within IAI47_02655 at 551.336 kb on - strand, within IAI47_02655 at 551.341 kb on + strand, within IAI47_02655 at 551.342 kb on - strand, within IAI47_02655 at 551.342 kb on - strand, within IAI47_02655 at 551.342 kb on - strand, within IAI47_02655 at 551.433 kb on + strand, within IAI47_02655 at 551.503 kb on + strand at 551.504 kb on - strand at 551.544 kb on - strand at 551.544 kb on - strand at 551.614 kb on + strand at 551.614 kb on + strand at 551.614 kb on + strand at 551.614 kb on + strand at 551.615 kb on - strand at 551.615 kb on - strand at 551.615 kb on - strand at 551.618 kb on + strand at 551.618 kb on + strand at 551.618 kb on + strand at 551.618 kb on + strand at 551.619 kb on - strand at 551.619 kb on - strand at 551.619 kb on - strand at 551.627 kb on - strand at 551.627 kb on - strand at 551.644 kb on + strand at 551.644 kb on + strand at 551.672 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Defined media, anaerobic, with FW301 groundwater remove 549,472 + IAI47_02645 0.57 +0.4 549,472 + IAI47_02645 0.57 -0.3 549,472 + IAI47_02645 0.57 -1.0 549,472 + IAI47_02645 0.57 +0.5 549,473 - IAI47_02645 0.57 -0.3 549,473 - IAI47_02645 0.57 +0.5 549,473 - IAI47_02645 0.57 -0.2 549,555 + IAI47_02645 0.62 +0.0 549,555 + IAI47_02645 0.62 -0.5 549,555 + IAI47_02645 0.62 +0.4 549,555 + IAI47_02645 0.62 +1.6 549,555 + IAI47_02645 0.62 +0.1 549,555 + IAI47_02645 0.62 +1.4 549,555 + IAI47_02645 0.62 +0.0 549,556 - IAI47_02645 0.62 -0.4 549,556 - IAI47_02645 0.62 +0.1 549,556 - IAI47_02645 0.62 +0.3 549,556 - IAI47_02645 0.62 +0.5 549,556 - IAI47_02645 0.62 +0.9 549,556 - IAI47_02645 0.62 +0.7 549,557 - IAI47_02645 0.62 +0.8 549,620 - IAI47_02645 0.65 +0.1 549,620 - IAI47_02645 0.65 -1.2 549,620 - IAI47_02645 0.65 +0.3 549,620 - IAI47_02645 0.65 +0.2 549,620 - IAI47_02645 0.65 -0.1 549,651 + IAI47_02645 0.67 +0.5 549,651 + IAI47_02645 0.67 +0.4 549,651 + IAI47_02645 0.67 +0.4 549,651 + IAI47_02645 0.67 +0.6 549,652 - IAI47_02645 0.67 +0.3 549,652 - IAI47_02645 0.67 -0.5 549,652 - IAI47_02645 0.67 -0.8 549,652 - IAI47_02645 0.67 +1.1 549,652 - IAI47_02645 0.67 -0.7 549,664 + IAI47_02645 0.67 +0.3 549,665 - IAI47_02645 0.67 -0.8 549,665 - IAI47_02645 0.67 -0.2 549,665 - IAI47_02645 0.67 +0.3 549,665 - IAI47_02645 0.67 +0.1 549,713 + IAI47_02645 0.70 -1.5 549,723 + IAI47_02645 0.70 +0.5 549,723 + IAI47_02645 0.70 +0.6 549,723 + IAI47_02645 0.70 -1.1 549,724 - IAI47_02645 0.70 +1.1 549,724 - IAI47_02645 0.70 +0.3 549,724 - IAI47_02645 0.70 +0.2 549,733 + IAI47_02645 0.71 -0.3 549,733 + IAI47_02645 0.71 +0.7 549,733 + IAI47_02645 0.71 -0.1 549,734 - IAI47_02645 0.71 -0.3 549,734 - IAI47_02645 0.71 -1.1 549,734 - IAI47_02645 0.71 +0.4 549,735 + IAI47_02645 0.71 -0.7 549,735 + IAI47_02645 0.71 +0.4 549,735 + IAI47_02645 0.71 -0.8 549,735 + IAI47_02645 0.71 -0.2 549,735 + IAI47_02645 0.71 -0.6 549,735 + IAI47_02645 0.71 -0.8 549,736 - IAI47_02645 0.71 +0.3 549,736 - IAI47_02645 0.71 +0.2 549,736 - IAI47_02645 0.71 -0.0 549,736 - IAI47_02645 0.71 +0.2 549,736 - IAI47_02645 0.71 +0.6 549,736 - IAI47_02645 0.71 -0.3 549,768 + IAI47_02645 0.73 +0.8 550,033 + IAI47_02645 0.86 -0.0 550,033 + IAI47_02645 0.86 -1.6 550,042 + IAI47_02645 0.87 +0.2 550,057 + IAI47_02645 0.88 +0.3 550,058 - IAI47_02645 0.88 +0.4 550,058 - IAI47_02645 0.88 -0.5 550,069 + IAI47_02645 0.88 +0.3 550,070 - IAI47_02645 0.88 -0.2 550,071 + IAI47_02645 0.88 -0.4 550,071 + IAI47_02645 0.88 +1.0 550,071 + IAI47_02645 0.88 -0.2 550,071 + IAI47_02645 0.88 -0.4 550,071 + IAI47_02645 0.88 -0.0 550,072 - IAI47_02645 0.88 -0.8 550,072 - IAI47_02645 0.88 -0.8 550,072 - IAI47_02645 0.88 -0.1 550,072 - IAI47_02645 0.88 +1.4 550,102 + -0.1 550,102 + -0.5 550,103 - -0.4 550,103 - +0.3 550,108 + -0.3 550,108 + -1.2 550,108 + -0.3 550,108 + +1.6 550,108 + -0.7 550,109 - +0.2 550,109 - -0.4 550,109 - -0.3 550,109 - -0.0 550,109 - +0.3 550,244 + -2.1 550,244 + -1.0 550,245 - +0.8 550,245 - -0.7 550,245 - -0.1 550,255 + -0.2 550,255 + +0.4 550,256 - -0.6 550,256 - -0.1 550,256 - +0.2 550,256 - -0.1 550,256 - -0.7 550,294 + +0.4 550,299 + +0.1 550,300 - +0.4 550,300 - -0.3 550,314 + -0.3 550,322 + -0.9 550,323 - +0.7 550,323 - +0.3 550,323 - +3.0 550,365 + +1.4 550,365 + -0.9 550,365 + -0.4 550,366 - +0.6 550,366 - -1.2 550,366 - -2.2 550,373 + +0.3 550,373 + +1.6 550,374 - +0.5 550,374 - +1.3 550,374 - +1.1 550,374 - +2.5 550,374 - -0.0 550,468 + +0.7 550,468 + +0.1 550,468 + +1.3 550,550 + IAI47_02650 0.13 -1.6 550,550 + IAI47_02650 0.13 -1.2 550,550 + IAI47_02650 0.13 +0.4 550,551 - IAI47_02650 0.13 -0.4 550,561 + IAI47_02650 0.14 +0.2 550,562 - IAI47_02650 0.14 -0.4 550,580 + IAI47_02650 0.17 +0.1 550,580 + IAI47_02650 0.17 -0.3 550,580 + IAI47_02650 0.17 -1.1 550,580 + IAI47_02650 0.17 -1.1 550,581 - IAI47_02650 0.17 +0.8 550,581 - IAI47_02650 0.17 -1.0 550,659 - IAI47_02650 0.27 -1.0 550,659 - IAI47_02650 0.27 -1.0 550,750 + IAI47_02650 0.39 +0.9 550,751 - IAI47_02650 0.40 +0.0 550,861 + IAI47_02650 0.54 -0.5 550,861 + IAI47_02650 0.54 +0.6 550,861 + IAI47_02650 0.54 -2.5 550,861 + IAI47_02650 0.54 -0.3 550,862 - IAI47_02650 0.54 -0.6 550,862 - IAI47_02650 0.54 -0.3 550,862 - IAI47_02650 0.54 -0.6 550,878 - IAI47_02650 0.57 -1.0 550,882 + IAI47_02650 0.57 -1.2 550,883 - IAI47_02650 0.57 -0.6 550,883 - IAI47_02650 0.57 -0.2 550,925 - IAI47_02650 0.63 -0.5 550,925 - IAI47_02650 0.63 -0.9 550,957 + IAI47_02650 0.67 -2.1 550,958 - IAI47_02650 0.67 +0.4 550,976 + IAI47_02650 0.70 -0.3 550,976 + IAI47_02650 0.70 +0.8 550,976 + IAI47_02650 0.70 -0.6 550,976 + IAI47_02650 0.70 -1.4 550,976 + IAI47_02650 0.70 +0.2 550,976 + IAI47_02650 0.70 -0.2 550,976 + IAI47_02650 0.70 -1.0 550,976 + IAI47_02650 0.70 -2.4 550,976 + IAI47_02650 0.70 -0.9 550,977 - IAI47_02650 0.70 +0.8 550,977 - IAI47_02650 0.70 +0.1 550,977 - IAI47_02650 0.70 -1.5 550,977 - IAI47_02650 0.70 -0.9 550,977 - IAI47_02650 0.70 -0.9 550,977 - IAI47_02650 0.70 -1.2 551,019 + IAI47_02650 0.75 -1.0 551,146 + -0.1 551,146 + +0.1 551,146 + -0.3 551,146 + +0.1 551,146 + -1.0 551,147 - -1.1 551,201 + -0.5 551,202 - +0.2 551,202 - +0.6 551,202 - +0.2 551,202 - +0.8 551,205 + +0.1 551,205 + +0.5 551,205 + -0.4 551,205 + -0.8 551,206 - +0.6 551,206 - -0.9 551,206 - +1.7 551,206 - -0.8 551,206 - +0.0 551,239 - +1.4 551,244 + +1.3 551,245 - -0.9 551,254 + -1.7 551,254 + +0.4 551,254 + -0.6 551,255 - +0.9 551,318 + IAI47_02655 0.31 +0.1 551,318 + IAI47_02655 0.31 -1.3 551,319 - IAI47_02655 0.32 -0.4 551,335 + IAI47_02655 0.40 +1.1 551,335 + IAI47_02655 0.40 +0.2 551,335 + IAI47_02655 0.40 +1.1 551,336 - IAI47_02655 0.40 +0.1 551,336 - IAI47_02655 0.40 -0.7 551,336 - IAI47_02655 0.40 +0.3 551,336 - IAI47_02655 0.40 +0.5 551,336 - IAI47_02655 0.40 +0.8 551,341 + IAI47_02655 0.43 +0.1 551,342 - IAI47_02655 0.43 -1.9 551,342 - IAI47_02655 0.43 -0.6 551,342 - IAI47_02655 0.43 +0.9 551,433 + IAI47_02655 0.87 +0.4 551,503 + -0.2 551,504 - -1.9 551,544 - -2.0 551,544 - +0.4 551,614 + -0.2 551,614 + -0.0 551,614 + -0.2 551,614 + -2.1 551,615 - +0.2 551,615 - +0.6 551,615 - -0.6 551,618 + -0.0 551,618 + -0.2 551,618 + -1.0 551,618 + +0.1 551,619 - -0.7 551,619 - +0.1 551,619 - +0.6 551,627 - +0.6 551,627 - -1.7 551,644 + +0.7 551,644 + +0.9 551,672 - -0.1
Or see this region's nucleotide sequence