Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03939

Experiment: PYE with Gentamicin 0.0005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00789 and CCNA_00790 are separated by 175 nucleotidesCCNA_00790 and CCNA_03939 are separated by 318 nucleotidesCCNA_03939 and CCNA_00792 are separated by 340 nucleotides CCNA_00789: CCNA_00789 - hypoxia transcriptional regulator FixK, at 852,873 to 853,523 _00789 CCNA_00790: CCNA_00790 - hypoxia negative feedback regulator FixT, at 853,699 to 854,076 _00790 CCNA_03939: CCNA_03939 - hypothetical protein, at 854,395 to 854,685 _03939 CCNA_00792: CCNA_00792 - glycosyltransferase, at 855,026 to 856,210 _00792 Position (kb) 854 855Strain fitness (log2 ratio) -2 -1 0 1 2at 853.414 kb on - strand, within CCNA_00789at 853.461 kb on + strandat 853.497 kb on - strandat 853.528 kb on - strandat 853.590 kb on + strandat 853.590 kb on + strandat 853.590 kb on + strandat 853.595 kb on + strandat 853.598 kb on - strandat 853.598 kb on - strandat 853.627 kb on - strandat 853.632 kb on + strandat 853.634 kb on + strandat 853.642 kb on - strandat 853.717 kb on - strandat 853.764 kb on + strand, within CCNA_00790at 853.772 kb on - strand, within CCNA_00790at 853.809 kb on + strand, within CCNA_00790at 853.811 kb on + strand, within CCNA_00790at 853.811 kb on + strand, within CCNA_00790at 853.811 kb on + strand, within CCNA_00790at 853.819 kb on - strand, within CCNA_00790at 853.819 kb on - strand, within CCNA_00790at 853.844 kb on + strand, within CCNA_00790at 853.854 kb on - strand, within CCNA_00790at 853.864 kb on - strand, within CCNA_00790at 853.937 kb on + strand, within CCNA_00790at 853.941 kb on + strand, within CCNA_00790at 853.981 kb on - strand, within CCNA_00790at 853.988 kb on + strand, within CCNA_00790at 853.988 kb on + strand, within CCNA_00790at 853.988 kb on + strand, within CCNA_00790at 854.076 kb on + strandat 854.078 kb on + strandat 854.118 kb on - strandat 854.130 kb on - strandat 854.130 kb on - strandat 854.138 kb on + strandat 854.146 kb on - strandat 854.153 kb on + strandat 854.173 kb on - strandat 854.187 kb on + strandat 854.226 kb on + strandat 854.255 kb on - strandat 854.272 kb on + strandat 854.272 kb on + strandat 854.275 kb on - strandat 854.322 kb on - strandat 854.326 kb on + strandat 854.349 kb on + strandat 854.352 kb on - strandat 854.357 kb on - strandat 854.357 kb on - strandat 854.357 kb on - strandat 854.370 kb on - strandat 854.375 kb on + strandat 854.383 kb on - strandat 854.405 kb on + strandat 854.405 kb on + strandat 854.413 kb on - strandat 854.413 kb on - strandat 854.413 kb on - strandat 854.413 kb on - strandat 854.413 kb on - strandat 854.413 kb on - strandat 854.427 kb on - strand, within CCNA_03939at 854.437 kb on - strand, within CCNA_03939at 854.437 kb on - strand, within CCNA_03939at 854.437 kb on - strand, within CCNA_03939at 854.437 kb on - strand, within CCNA_03939at 854.447 kb on - strand, within CCNA_03939at 854.498 kb on + strand, within CCNA_03939at 854.499 kb on + strand, within CCNA_03939at 854.524 kb on - strand, within CCNA_03939at 854.539 kb on - strand, within CCNA_03939at 854.540 kb on + strand, within CCNA_03939at 854.546 kb on + strand, within CCNA_03939at 854.563 kb on - strand, within CCNA_03939at 854.587 kb on - strand, within CCNA_03939at 854.596 kb on + strand, within CCNA_03939at 854.681 kb on + strandat 854.686 kb on + strandat 854.701 kb on + strandat 854.709 kb on - strandat 854.709 kb on - strandat 854.709 kb on - strandat 854.739 kb on + strandat 854.749 kb on - strandat 854.752 kb on + strandat 854.752 kb on - strandat 854.762 kb on + strandat 854.768 kb on + strandat 854.776 kb on - strandat 854.776 kb on - strandat 854.820 kb on + strandat 854.820 kb on - strandat 854.828 kb on - strandat 854.828 kb on - strandat 854.900 kb on - strandat 854.947 kb on - strandat 854.948 kb on + strandat 854.948 kb on + strandat 854.958 kb on + strandat 854.984 kb on + strandat 855.033 kb on - strandat 855.059 kb on + strandat 855.144 kb on + strandat 855.144 kb on + strandat 855.144 kb on + strandat 855.152 kb on - strand, within CCNA_00792at 855.152 kb on - strand, within CCNA_00792at 855.152 kb on - strand, within CCNA_00792at 855.152 kb on - strand, within CCNA_00792at 855.152 kb on - strand, within CCNA_00792at 855.152 kb on - strand, within CCNA_00792at 855.152 kb on - strand, within CCNA_00792at 855.182 kb on - strand, within CCNA_00792at 855.184 kb on - strand, within CCNA_00792at 855.241 kb on + strand, within CCNA_00792at 855.265 kb on + strand, within CCNA_00792at 855.265 kb on + strand, within CCNA_00792at 855.273 kb on - strand, within CCNA_00792at 855.280 kb on + strand, within CCNA_00792at 855.286 kb on + strand, within CCNA_00792at 855.316 kb on + strand, within CCNA_00792at 855.362 kb on + strand, within CCNA_00792at 855.370 kb on - strand, within CCNA_00792at 855.422 kb on - strand, within CCNA_00792at 855.455 kb on + strand, within CCNA_00792at 855.475 kb on + strand, within CCNA_00792at 855.483 kb on - strand, within CCNA_00792at 855.483 kb on - strand, within CCNA_00792at 855.495 kb on + strand, within CCNA_00792at 855.503 kb on - strand, within CCNA_00792at 855.513 kb on - strand, within CCNA_00792at 855.526 kb on + strand, within CCNA_00792at 855.573 kb on + strand, within CCNA_00792at 855.658 kb on + strand, within CCNA_00792at 855.665 kb on + strand, within CCNA_00792

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Gentamicin 0.0005 mg/ml
remove
853,414 - CCNA_00789 0.83 -1.5
853,461 + -0.5
853,497 - +0.9
853,528 - +1.3
853,590 + -1.0
853,590 + +1.3
853,590 + -1.2
853,595 + -0.5
853,598 - +1.1
853,598 - -1.2
853,627 - +1.5
853,632 + -0.5
853,634 + -0.1
853,642 - -0.8
853,717 - +1.6
853,764 + CCNA_00790 0.17 +0.3
853,772 - CCNA_00790 0.19 +0.9
853,809 + CCNA_00790 0.29 +1.0
853,811 + CCNA_00790 0.30 +0.3
853,811 + CCNA_00790 0.30 -0.7
853,811 + CCNA_00790 0.30 -1.5
853,819 - CCNA_00790 0.32 +0.7
853,819 - CCNA_00790 0.32 +1.2
853,844 + CCNA_00790 0.38 +1.5
853,854 - CCNA_00790 0.41 +1.0
853,864 - CCNA_00790 0.44 -0.3
853,937 + CCNA_00790 0.63 -0.9
853,941 + CCNA_00790 0.64 +0.9
853,981 - CCNA_00790 0.75 +0.8
853,988 + CCNA_00790 0.76 -0.7
853,988 + CCNA_00790 0.76 -0.1
853,988 + CCNA_00790 0.76 -1.7
854,076 + -1.2
854,078 + +0.1
854,118 - +1.1
854,130 - -0.3
854,130 - +1.8
854,138 + +1.1
854,146 - -0.6
854,153 + -1.3
854,173 - +0.3
854,187 + +0.4
854,226 + +1.3
854,255 - +0.4
854,272 + +1.1
854,272 + -0.1
854,275 - -0.8
854,322 - -1.1
854,326 + -1.1
854,349 + +0.2
854,352 - -1.4
854,357 - -1.1
854,357 - -0.4
854,357 - -0.6
854,370 - +0.2
854,375 + -0.2
854,383 - +1.1
854,405 + +0.2
854,405 + +0.4
854,413 - -0.4
854,413 - -1.3
854,413 - -1.3
854,413 - +0.9
854,413 - -1.6
854,413 - +1.3
854,427 - CCNA_03939 0.11 -1.7
854,437 - CCNA_03939 0.14 +0.7
854,437 - CCNA_03939 0.14 +0.2
854,437 - CCNA_03939 0.14 -0.2
854,437 - CCNA_03939 0.14 +1.2
854,447 - CCNA_03939 0.18 +1.8
854,498 + CCNA_03939 0.35 +2.1
854,499 + CCNA_03939 0.36 +0.7
854,524 - CCNA_03939 0.44 -0.9
854,539 - CCNA_03939 0.49 -0.2
854,540 + CCNA_03939 0.50 +1.6
854,546 + CCNA_03939 0.52 -0.3
854,563 - CCNA_03939 0.58 -2.5
854,587 - CCNA_03939 0.66 +1.7
854,596 + CCNA_03939 0.69 +0.3
854,681 + -1.1
854,686 + +0.3
854,701 + +0.7
854,709 - -0.9
854,709 - -0.9
854,709 - -0.1
854,739 + +0.1
854,749 - +0.3
854,752 + +0.3
854,752 - +0.1
854,762 + -0.6
854,768 + -0.5
854,776 - +1.5
854,776 - +0.8
854,820 + +0.9
854,820 - +1.7
854,828 - -0.6
854,828 - +0.1
854,900 - -0.1
854,947 - +0.7
854,948 + -0.6
854,948 + -0.4
854,958 + -0.4
854,984 + -0.8
855,033 - -0.5
855,059 + -1.2
855,144 + -0.7
855,144 + -1.0
855,144 + +0.8
855,152 - CCNA_00792 0.11 -1.6
855,152 - CCNA_00792 0.11 +1.9
855,152 - CCNA_00792 0.11 -0.7
855,152 - CCNA_00792 0.11 +2.5
855,152 - CCNA_00792 0.11 +1.1
855,152 - CCNA_00792 0.11 +0.1
855,152 - CCNA_00792 0.11 +1.3
855,182 - CCNA_00792 0.13 +1.4
855,184 - CCNA_00792 0.13 -0.1
855,241 + CCNA_00792 0.18 +1.5
855,265 + CCNA_00792 0.20 +1.6
855,265 + CCNA_00792 0.20 +0.1
855,273 - CCNA_00792 0.21 -1.4
855,280 + CCNA_00792 0.21 +0.1
855,286 + CCNA_00792 0.22 -1.4
855,316 + CCNA_00792 0.24 -0.9
855,362 + CCNA_00792 0.28 +0.3
855,370 - CCNA_00792 0.29 -1.1
855,422 - CCNA_00792 0.33 +0.4
855,455 + CCNA_00792 0.36 +0.4
855,475 + CCNA_00792 0.38 -1.0
855,483 - CCNA_00792 0.39 +0.7
855,483 - CCNA_00792 0.39 -0.6
855,495 + CCNA_00792 0.40 -0.9
855,503 - CCNA_00792 0.40 +0.3
855,513 - CCNA_00792 0.41 -1.3
855,526 + CCNA_00792 0.42 -1.0
855,573 + CCNA_00792 0.46 +0.8
855,658 + CCNA_00792 0.53 +0.5
855,665 + CCNA_00792 0.54 +1.8

Or see this region's nucleotide sequence