Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03809

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
3,972,210	-		CCNA_03807	0.32	+0.3
3,972,299	+		CCNA_03807	0.46	+2.1
3,972,307	-		CCNA_03807	0.47	-0.0
3,972,307	-		CCNA_03807	0.47	+0.2
3,972,338	-		CCNA_03807	0.52	+2.4
3,972,396	-		CCNA_03807	0.60	+1.1
3,972,398	-		CCNA_03807	0.61	-0.2
3,972,460	+		CCNA_03807	0.70	+2.1
3,972,465	+		CCNA_03807	0.71	+2.4
3,972,475	+		CCNA_03807	0.72	+2.3
3,972,483	-		CCNA_03807	0.74	-0.5
3,972,490	+		CCNA_03807	0.75	+2.6
3,972,493	+		CCNA_03807	0.75	+2.2
3,972,493	+		CCNA_03807	0.75	+2.5
3,972,493	+		CCNA_03807	0.75	+2.4
3,972,493	+		CCNA_03807	0.75	+1.7
3,972,493	+		CCNA_03807	0.75	+2.6
3,972,493	+		CCNA_03807	0.75	+2.2
3,972,493	+		CCNA_03807	0.75	+2.4
3,972,493	-		CCNA_03807	0.75	-0.4
3,972,501	-		CCNA_03807	0.76	-0.5
3,972,501	-		CCNA_03807	0.76	-1.1
3,972,520	-		CCNA_03807	0.79	-0.7
3,972,542	-		CCNA_03807	0.83	-2.5
3,972,542	-		CCNA_03807	0.83	-0.1
3,972,542	-		CCNA_03807	0.83	+0.1
3,972,552	+		CCNA_03807	0.84	+2.3
3,972,662	+				+1.3
3,972,662	+				+0.6
3,972,684	+				+1.1
3,972,753	+		CCNA_03808	0.13	+2.2
3,972,753	+		CCNA_03808	0.13	+1.8
3,972,753	+		CCNA_03808	0.13	+2.7
3,972,781	-		CCNA_03808	0.18	+1.1
3,972,857	+		CCNA_03808	0.33	+1.7
3,972,873	+		CCNA_03808	0.36	+2.1
3,972,889	+		CCNA_03808	0.39	+2.4
3,972,897	+		CCNA_03808	0.41	+2.6
3,972,897	+		CCNA_03808	0.41	+1.8
3,972,902	+		CCNA_03808	0.42	+2.0
3,972,905	-		CCNA_03808	0.42	-1.3
3,972,909	+		CCNA_03808	0.43	+2.1
3,972,909	+		CCNA_03808	0.43	+2.5
3,972,972	+				+2.7
3,972,991	+		CCNA_03808	0.59	+2.1
3,973,000	+		CCNA_03808	0.61	+2.5
3,973,010	+		CCNA_03808	0.63	+1.8
3,973,015	+		CCNA_03808	0.64	+2.9
3,973,049	+		CCNA_03808	0.70	+3.2
3,973,049	+		CCNA_03808	0.70	+3.0
3,973,049	+		CCNA_03808	0.70	+2.8
3,973,049	+		CCNA_03808	0.70	+2.9
3,973,057	-		CCNA_03808	0.72	-0.1
3,973,057	-		CCNA_03808	0.72	-0.1
3,973,155	-				+1.0
3,973,194	+				+1.8
3,973,202	-				-0.4
3,973,249	+				+2.0
3,973,250	+				+1.9
3,973,258	-				+0.1
3,973,265	+				+1.6
3,973,265	+				+1.7
3,973,273	-				+2.5
3,973,273	-				-0.6
3,973,273	-				+1.6
3,973,295	+		CCNA_03809	0.11	+2.3
3,973,400	+		CCNA_03809	0.24	+1.8
3,973,447	-		CCNA_03809	0.30	-0.2
3,973,468	+		CCNA_03809	0.33	+1.9
3,973,473	+		CCNA_03809	0.33	+2.2
3,973,476	-		CCNA_03809	0.34	-1.0
3,973,476	-		CCNA_03809	0.34	+0.7
3,973,483	+		CCNA_03809	0.35	+2.1
3,973,554	-		CCNA_03809	0.43	+0.5
3,973,585	+		CCNA_03809	0.47	+1.1
3,973,593	-		CCNA_03809	0.48	+1.0
3,973,593	-		CCNA_03809	0.48	+0.8
3,973,593	-		CCNA_03809	0.48	+2.7
3,973,602	+		CCNA_03809	0.49	+1.3
3,973,661	-		CCNA_03809	0.57	-0.9
3,973,690	-		CCNA_03809	0.60	+0.5
3,973,707	-		CCNA_03809	0.62	+0.7
3,973,786	-		CCNA_03809	0.72	+0.4
3,973,824	+		CCNA_03809	0.77	+1.3
3,973,834	+		CCNA_03809	0.78	-1.4
3,973,834	+		CCNA_03809	0.78	-1.9
3,973,834	+		CCNA_03809	0.78	+1.3
3,973,857	-		CCNA_03809	0.81	+0.7
3,973,945	+				+0.9
3,973,960	+				+1.3
3,973,987	-				+0.2
3,974,053	-				-0.1
3,974,055	+				+2.5
3,974,055	-				-0.1
3,974,071	+				+2.3
3,974,134	+		CCNA_03810	0.16	+2.3
3,974,134	+		CCNA_03810	0.16	+1.8
3,974,134	+		CCNA_03810	0.16	+2.7
3,974,137	-		CCNA_03810	0.17	+1.9
3,974,139	+		CCNA_03810	0.17	+2.7
3,974,154	+		CCNA_03810	0.19	+2.4
3,974,165	+		CCNA_03810	0.20	+1.8
3,974,167	-		CCNA_03810	0.21	-0.5
3,974,237	-				+2.4
3,974,237	-				+2.7
3,974,237	-		CCNA_03810	0.30	-0.5
3,974,237	-		CCNA_03810	0.30	+0.3
3,974,237	-		CCNA_03810	0.30	+0.9
3,974,274	+		CCNA_03810	0.35	+2.1
3,974,282	-		CCNA_03810	0.36	+0.3
3,974,282	-		CCNA_03810	0.36	+0.1
3,974,295	-		CCNA_03810	0.37	+0.6
3,974,332	-		CCNA_03810	0.42	+0.8
3,974,365	+		CCNA_03810	0.46	+2.2
3,974,373	-		CCNA_03810	0.47	-0.2
3,974,450	+		CCNA_03810	0.57	+1.9
3,974,458	-		CCNA_03810	0.58	-0.5
3,974,458	-		CCNA_03810	0.58	-0.3
3,974,460	-		CCNA_03810	0.59	+0.4
3,974,467	+		CCNA_03810	0.60	+1.9
3,974,467	+		CCNA_03810	0.60	+1.9
3,974,467	+		CCNA_03810	0.60	+2.1
3,974,467	+		CCNA_03810	0.60	+1.1
3,974,467	+		CCNA_03810	0.60	+2.3
3,974,467	+		CCNA_03810	0.60	+2.5
3,974,467	+		CCNA_03810	0.60	+1.6
3,974,475	-		CCNA_03810	0.61	+0.7
3,974,475	-		CCNA_03810	0.61	+1.7
3,974,475	-		CCNA_03810	0.61	+0.6
3,974,482	+		CCNA_03810	0.61	+2.0
3,974,482	+		CCNA_03810	0.61	+1.7
3,974,482	+		CCNA_03810	0.61	+2.5
3,974,482	+		CCNA_03810	0.61	+1.6
3,974,490	-		CCNA_03810	0.63	+1.1
3,974,525	-		CCNA_03810	0.67	-1.6
3,974,538	+		CCNA_03810	0.69	+2.1
3,974,612	+		CCNA_03810	0.78	+1.8
3,974,612	+		CCNA_03810	0.78	+1.3
3,974,612	+		CCNA_03810	0.78	+2.2
3,974,620	-		CCNA_03810	0.79	-1.4
3,974,620	-		CCNA_03810	0.79	+0.2
3,974,620	-		CCNA_03810	0.79	+1.2
3,974,620	-		CCNA_03810	0.79	-1.1
3,974,620	-		CCNA_03810	0.79	+0.7
3,974,637	-		CCNA_03810	0.82	-0.2
3,974,703	+				+1.1
3,974,733	-				+0.1
3,974,779	+				+0.6
3,974,857	-				+1.3
3,974,962	+		CCNA_03811	0.20	-0.4
3,974,962	+		CCNA_03811	0.20	-1.2
3,974,967	+		CCNA_03811	0.20	+1.1
3,974,967	+		CCNA_03811	0.20	+0.5
3,974,967	+		CCNA_03811	0.20	+0.5
3,974,967	+		CCNA_03811	0.20	+0.7
3,974,967	+		CCNA_03811	0.20	+0.4
3,974,967	+		CCNA_03811	0.20	-0.4
3,974,967	+		CCNA_03811	0.20	+0.5
3,974,970	-		CCNA_03811	0.20	+1.6
3,974,975	-		CCNA_03811	0.21	+2.5
3,974,975	-		CCNA_03811	0.21	+1.0
3,974,975	-		CCNA_03811	0.21	+1.7
3,974,990	+		CCNA_03811	0.23	+1.7
3,974,993	-		CCNA_03811	0.23	+1.9