Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03806

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
3,970,166	-		CCNA_03804	0.63	-0.9
3,970,167	+		CCNA_03804	0.64	-1.3
3,970,172	+		CCNA_03804	0.65	+0.3
3,970,172	+		CCNA_03804	0.65	+0.6
3,970,172	+		CCNA_03804	0.65	-0.5
3,970,180	-		CCNA_03804	0.68	+1.6
3,970,180	-		CCNA_03804	0.68	-0.5
3,970,180	-		CCNA_03804	0.68	+0.1
3,970,191	+		CCNA_03804	0.71	-2.0
3,970,208	+		CCNA_03804	0.76	-1.4
3,970,254	+				+0.3
3,970,254	+				+0.8
3,970,254	+				-0.7
3,970,294	-				+3.5
3,970,321	-		CCNA_03805	0.11	+5.2
3,970,328	-		CCNA_03805	0.12	+3.8
3,970,328	-		CCNA_03805	0.12	+3.7
3,970,367	-		CCNA_03805	0.19	+3.8
3,970,367	-		CCNA_03805	0.19	+4.4
3,970,369	-		CCNA_03805	0.20	+4.7
3,970,388	-		CCNA_03805	0.23	+4.2
3,970,417	-		CCNA_03805	0.28	+3.4
3,970,417	-		CCNA_03805	0.28	+3.4
3,970,417	-		CCNA_03805	0.28	+3.3
3,970,439	-		CCNA_03805	0.32	+3.9
3,970,441	-		CCNA_03805	0.32	+2.7
3,970,464	-		CCNA_03805	0.36	+3.6
3,970,483	-		CCNA_03805	0.39	+5.9
3,970,505	-		CCNA_03805	0.43	+5.9
3,970,505	-		CCNA_03805	0.43	+5.1
3,970,544	-		CCNA_03805	0.50	+5.3
3,970,544	-		CCNA_03805	0.50	+4.0
3,970,567	-		CCNA_03805	0.54	+6.0
3,970,572	-		CCNA_03805	0.55	+3.7
3,970,572	-		CCNA_03805	0.55	+5.3
3,970,631	-		CCNA_03805	0.65	+3.8
3,970,690	-		CCNA_03805	0.75	+3.3
3,970,690	-		CCNA_03805	0.75	+3.2
3,970,737	+		CCNA_03805	0.83	-0.7
3,970,745	-		CCNA_03805	0.84	-0.9
3,970,947	+				-1.1
3,970,989	+				-0.5
3,970,989	-				-1.5
3,970,990	+				-2.6
3,971,019	+				-2.3
3,971,044	-				-0.4
3,971,080	+				-0.5
3,971,085	+				+0.1
3,971,104	+				+1.3
3,971,104	+				+0.3
3,971,104	+				+1.3
3,971,211	-				-0.7
3,971,280	-		CCNA_03806	0.16	-1.7
3,971,288	+		CCNA_03806	0.17	+2.4
3,971,304	-		CCNA_03806	0.19	-0.4
3,971,366	+		CCNA_03806	0.26	+2.1
3,971,366	+		CCNA_03806	0.26	+2.2
3,971,366	+		CCNA_03806	0.26	+1.6
3,971,366	+		CCNA_03806	0.26	+2.8
3,971,366	+		CCNA_03806	0.26	+2.7
3,971,366	+		CCNA_03806	0.26	+2.2
3,971,366	+		CCNA_03806	0.26	+2.4
3,971,374	-		CCNA_03806	0.27	+0.7
3,971,374	-		CCNA_03806	0.27	+1.7
3,971,374	-		CCNA_03806	0.27	+0.6
3,971,374	-		CCNA_03806	0.27	+0.8
3,971,374	-		CCNA_03806	0.27	+0.8
3,971,374	-		CCNA_03806	0.27	+0.4
3,971,374	-		CCNA_03806	0.27	-1.3
3,971,374	-		CCNA_03806	0.27	+0.0
3,971,374	-		CCNA_03806	0.27	+0.5
3,971,379	-		CCNA_03806	0.28	+0.1
3,971,379	-		CCNA_03806	0.28	+1.5
3,971,379	-		CCNA_03806	0.28	+0.4
3,971,404	-		CCNA_03806	0.31	+1.0
3,971,409	-		CCNA_03806	0.31	+0.5
3,971,495	+		CCNA_03806	0.41	+1.6
3,971,503	-		CCNA_03806	0.42	+0.2
3,971,542	+		CCNA_03806	0.47	+2.2
3,971,555	-		CCNA_03806	0.48	+0.5
3,971,575	-		CCNA_03806	0.51	-2.1
3,971,585	+		CCNA_03806	0.52	+1.9
3,971,627	+		CCNA_03806	0.57	+2.0
3,971,657	+		CCNA_03806	0.60	+1.7
3,971,657	+		CCNA_03806	0.60	+1.8
3,971,657	+		CCNA_03806	0.60	+2.2
3,971,658	-		CCNA_03806	0.60	+0.2
3,971,672	+		CCNA_03806	0.62	+2.5
3,971,677	+		CCNA_03806	0.63	+2.5
3,971,685	+		CCNA_03806	0.64	+1.9
3,971,685	+		CCNA_03806	0.64	+2.1
3,971,693	-		CCNA_03806	0.64	-0.4
3,971,693	-		CCNA_03806	0.64	-1.1
3,971,787	-		CCNA_03806	0.75	+1.1
3,971,790	+		CCNA_03806	0.76	+2.7
3,971,837	+		CCNA_03806	0.81	+2.5
3,971,837	+		CCNA_03806	0.81	+3.0
3,971,837	+		CCNA_03806	0.81	+2.1
3,971,845	-		CCNA_03806	0.82	-0.1
3,971,845	-		CCNA_03806	0.82	+0.3
3,971,845	-		CCNA_03806	0.82	-0.9
3,971,850	+		CCNA_03806	0.83	+2.0
3,971,850	+		CCNA_03806	0.83	+1.9
3,971,890	+		CCNA_03806	0.87	+2.3
3,971,897	-		CCNA_03806	0.88	+0.4
3,971,986	+				+1.5
3,971,999	-				-0.9
3,972,000	-				-0.5
3,972,001	-				+0.8
3,972,058	+				+3.1
3,972,058	+				+1.8
3,972,059	-				+0.7
3,972,095	+		CCNA_03807	0.15	+2.4
3,972,103	-		CCNA_03807	0.16	+0.5
3,972,103	-		CCNA_03807	0.16	-1.2
3,972,105	+		CCNA_03807	0.17	+2.3
3,972,106	+		CCNA_03807	0.17	+2.3
3,972,106	+		CCNA_03807	0.17	+1.9
3,972,133	+		CCNA_03807	0.21	+2.6
3,972,150	+		CCNA_03807	0.23	+2.7
3,972,150	+		CCNA_03807	0.23	+2.4
3,972,150	+		CCNA_03807	0.23	+2.1
3,972,150	+		CCNA_03807	0.23	+2.2
3,972,150	+		CCNA_03807	0.23	+2.9
3,972,150	+		CCNA_03807	0.23	+2.6
3,972,150	+		CCNA_03807	0.23	+2.1
3,972,150	+		CCNA_03807	0.23	+3.9
3,972,210	-		CCNA_03807	0.32	+0.3
3,972,299	+		CCNA_03807	0.46	+2.1
3,972,307	-		CCNA_03807	0.47	-0.0
3,972,307	-		CCNA_03807	0.47	+0.2
3,972,338	-		CCNA_03807	0.52	+2.4
3,972,396	-		CCNA_03807	0.60	+1.1
3,972,398	-		CCNA_03807	0.61	-0.2
3,972,460	+		CCNA_03807	0.70	+2.1
3,972,465	+		CCNA_03807	0.71	+2.4
3,972,475	+		CCNA_03807	0.72	+2.3
3,972,483	-		CCNA_03807	0.74	-0.5
3,972,490	+		CCNA_03807	0.75	+2.6
3,972,493	+		CCNA_03807	0.75	+2.2
3,972,493	+		CCNA_03807	0.75	+2.5
3,972,493	+		CCNA_03807	0.75	+2.4
3,972,493	+		CCNA_03807	0.75	+1.7
3,972,493	+		CCNA_03807	0.75	+2.6
3,972,493	+		CCNA_03807	0.75	+2.2
3,972,493	+		CCNA_03807	0.75	+2.4
3,972,493	-		CCNA_03807	0.75	-0.4
3,972,501	-		CCNA_03807	0.76	-0.5
3,972,501	-		CCNA_03807	0.76	-1.1
3,972,520	-		CCNA_03807	0.79	-0.7
3,972,542	-		CCNA_03807	0.83	-2.5
3,972,542	-		CCNA_03807	0.83	-0.1
3,972,542	-		CCNA_03807	0.83	+0.1
3,972,552	+		CCNA_03807	0.84	+2.3
3,972,662	+				+1.3
3,972,662	+				+0.6
3,972,684	+				+1.1
3,972,753	+		CCNA_03808	0.13	+2.2
3,972,753	+		CCNA_03808	0.13	+1.8
3,972,753	+		CCNA_03808	0.13	+2.7
3,972,781	-		CCNA_03808	0.18	+1.1
3,972,857	+		CCNA_03808	0.33	+1.7
3,972,873	+		CCNA_03808	0.36	+2.1
3,972,889	+		CCNA_03808	0.39	+2.4
3,972,897	+		CCNA_03808	0.41	+2.6
3,972,897	+		CCNA_03808	0.41	+1.8
3,972,902	+		CCNA_03808	0.42	+2.0
3,972,905	-		CCNA_03808	0.42	-1.3
3,972,909	+		CCNA_03808	0.43	+2.1
3,972,909	+		CCNA_03808	0.43	+2.5
3,972,972	+				+2.7
3,972,991	+		CCNA_03808	0.59	+2.1