Experiment: PYE with Gentamicin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03765 and CCNA_03766 are separated by 23 nucleotides CCNA_03766 and CCNA_03767 are separated by 56 nucleotides CCNA_03767 and CCNA_03768 are separated by 26 nucleotides
CCNA_03765: CCNA_03765 - phosphohydrolase, MutT/nudix family protein, at 3,933,616 to 3,934,179
_03765
CCNA_03766: CCNA_03766 - 16S rRNA processing protein RimM, at 3,934,203 to 3,934,784
_03766
CCNA_03767: CCNA_03767 - SSU ribosomal protein S16P, at 3,934,841 to 3,935,338
_03767
CCNA_03768: CCNA_03768 - signal recognition particle GTPase, SRP, at 3,935,365 to 3,936,891
_03768
Position (kb)
3934
3935
3936 Strain fitness (log2 ratio)
-2
-1
0
1 at 3933.861 kb on + strand, within CCNA_03765 at 3933.861 kb on + strand, within CCNA_03765 at 3933.869 kb on - strand, within CCNA_03765 at 3933.921 kb on + strand, within CCNA_03765 at 3933.926 kb on + strand, within CCNA_03765 at 3933.970 kb on - strand, within CCNA_03765 at 3933.986 kb on - strand, within CCNA_03765 at 3934.043 kb on - strand, within CCNA_03765 at 3934.054 kb on + strand, within CCNA_03765 at 3934.054 kb on + strand, within CCNA_03765 at 3934.054 kb on + strand, within CCNA_03765 at 3934.054 kb on + strand, within CCNA_03765 at 3934.061 kb on + strand, within CCNA_03765 at 3934.062 kb on - strand, within CCNA_03765 at 3934.067 kb on - strand, within CCNA_03765 at 3934.069 kb on - strand, within CCNA_03765 at 3934.072 kb on + strand, within CCNA_03765 at 3934.074 kb on - strand, within CCNA_03765 at 3934.120 kb on + strand, within CCNA_03765 at 3934.201 kb on + strand at 3934.201 kb on + strand at 3934.209 kb on - strand at 3934.209 kb on - strand at 3934.228 kb on - strand at 3934.250 kb on - strand at 3934.250 kb on - strand at 3934.282 kb on + strand, within CCNA_03766 at 3934.301 kb on - strand at 3934.780 kb on + strand at 3934.790 kb on + strand at 3934.793 kb on - strand at 3934.793 kb on - strand at 3934.808 kb on - strand at 3935.468 kb on - strand at 3935.478 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Gentamicin 0.0005 mg/ml remove 3,933,861 + CCNA_03765 0.43 +1.0 3,933,861 + CCNA_03765 0.43 +1.1 3,933,869 - CCNA_03765 0.45 -0.9 3,933,921 + CCNA_03765 0.54 +0.4 3,933,926 + CCNA_03765 0.55 -0.0 3,933,970 - CCNA_03765 0.63 +0.9 3,933,986 - CCNA_03765 0.66 +0.8 3,934,043 - CCNA_03765 0.76 +0.3 3,934,054 + CCNA_03765 0.78 -2.0 3,934,054 + CCNA_03765 0.78 -1.0 3,934,054 + CCNA_03765 0.78 -0.7 3,934,054 + CCNA_03765 0.78 +0.2 3,934,061 + CCNA_03765 0.79 -0.7 3,934,062 - CCNA_03765 0.79 +0.2 3,934,067 - CCNA_03765 0.80 +0.5 3,934,069 - CCNA_03765 0.80 +0.4 3,934,072 + CCNA_03765 0.81 +0.9 3,934,074 - CCNA_03765 0.81 +1.4 3,934,120 + CCNA_03765 0.89 -0.9 3,934,201 + +0.7 3,934,201 + -0.3 3,934,209 - +0.4 3,934,209 - -1.3 3,934,228 - +0.1 3,934,250 - +1.2 3,934,250 - +1.1 3,934,282 + CCNA_03766 0.14 -0.6 3,934,301 - +1.4 3,934,780 + +0.5 3,934,790 + -2.0 3,934,793 - +1.1 3,934,793 - +1.1 3,934,808 - +1.3 3,935,468 - +1.0 3,935,478 - +1.1
Or see this region's nucleotide sequence