Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03262

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
3,429,766	-		CCNA_03260	0.19	+0.8
3,429,827	-		CCNA_03260	0.36	+0.4
3,429,827	-		CCNA_03260	0.36	-1.5
3,429,855	-		CCNA_03260	0.43	-0.3
3,429,856	-		CCNA_03260	0.43	+0.7
3,429,951	-		CCNA_03260	0.69	+0.5
3,429,951	-		CCNA_03260	0.69	+0.4
3,429,951	-		CCNA_03260	0.69	+0.9
3,429,951	-		CCNA_03260	0.69	+1.0
3,430,060	+				+0.3
3,430,081	+				+0.3
3,430,090	-				+1.1
3,430,141	-				+1.2
3,430,254	+		CCNA_03261	0.19	+0.4
3,430,298	+		CCNA_03261	0.26	-0.4
3,430,298	+				+1.9
3,430,300	-		CCNA_03261	0.26	-1.4
3,430,368	+		CCNA_03261	0.37	-1.5
3,430,378	+		CCNA_03261	0.38	-0.1
3,430,386	-		CCNA_03261	0.40	-0.1
3,430,526	-		CCNA_03261	0.62	-1.5
3,430,563	-		CCNA_03261	0.68	-0.1
3,430,643	+		CCNA_03261	0.80	+0.8
3,430,656	-		CCNA_03261	0.82	-3.1
3,430,706	-				-1.0
3,430,757	+				+2.4
3,430,797	-				-0.2
3,430,804	+				+0.8
3,430,807	+				+1.4
3,430,812	-				+1.6
3,430,812	-				-2.5
3,430,812	-				-2.1
3,430,834	+				-0.1
3,430,834	+				+1.1
3,430,834	+				+0.2
3,430,842	-				+1.6
3,430,842	-		CCNA_03262	0.11	-1.6
3,430,853	+		CCNA_03262	0.12	-0.2
3,430,886	+		CCNA_03262	0.17	+1.1
3,430,894	-		CCNA_03262	0.18	+0.5
3,430,894	-		CCNA_03262	0.18	-0.9
3,430,941	+		CCNA_03262	0.24	+2.1
3,430,950	-		CCNA_03262	0.26	-1.9
3,430,950	-		CCNA_03262	0.26	-1.1
3,430,952	+		CCNA_03262	0.26	-0.5
3,430,952	+		CCNA_03262	0.26	+0.2
3,430,952	+		CCNA_03262	0.26	+0.4
3,430,954	+		CCNA_03262	0.26	+0.0
3,430,954	+		CCNA_03262	0.26	-0.7
3,430,954	+		CCNA_03262	0.26	-1.8
3,430,954	+				+2.1
3,430,960	-		CCNA_03262	0.27	+0.0
3,430,960	-		CCNA_03262	0.27	+0.0
3,430,960	-		CCNA_03262	0.27	+0.8
3,430,960	-		CCNA_03262	0.27	+2.1
3,430,960	-		CCNA_03262	0.27	+0.9
3,430,960	-		CCNA_03262	0.27	-1.1
3,430,960	-		CCNA_03262	0.27	+0.0
3,430,962	-		CCNA_03262	0.27	+0.3
3,430,962	-		CCNA_03262	0.27	+0.9
3,430,962	-		CCNA_03262	0.27	-1.8
3,430,974	-		CCNA_03262	0.29	-2.0
3,430,980	+		CCNA_03262	0.30	+1.4
3,430,983	-		CCNA_03262	0.30	+0.2
3,430,988	-		CCNA_03262	0.31	-1.2
3,431,022	+		CCNA_03262	0.35	+0.5
3,431,030	-		CCNA_03262	0.36	+0.7
3,431,042	+		CCNA_03262	0.38	+0.6
3,431,050	-		CCNA_03262	0.39	-0.3
3,431,075	-		CCNA_03262	0.43	-0.7
3,431,086	+		CCNA_03262	0.44	-1.3
3,431,157	-		CCNA_03262	0.54	+1.9
3,431,196	-		CCNA_03262	0.59	+0.6
3,431,213	-		CCNA_03262	0.62	+2.4
3,431,248	-		CCNA_03262	0.66	+0.9
3,431,285	-		CCNA_03262	0.71	-0.4
3,431,286	-		CCNA_03262	0.72	-1.9
3,431,372	-		CCNA_03262	0.83	-1.4
3,431,377	-		CCNA_03262	0.84	-0.5
3,431,377	-		CCNA_03262	0.84	+1.8
3,431,400	+		CCNA_03262	0.87	+0.0
3,431,400	+		CCNA_03262	0.87	-0.6
3,431,416	+		CCNA_03262	0.89	+1.1
3,431,434	+				-0.3
3,431,434	-				-0.7
3,431,442	-				-2.1
3,431,442	-				-0.3
3,431,499	+				-0.8
3,431,499	+				-0.5
3,431,499	+				+0.9
3,431,535	+				-1.2
3,431,535	+				+0.0
3,431,535	+				-0.8
3,431,535	+				-1.2
3,431,535	-				+0.2
3,431,535	-				+0.4
3,431,543	-				-0.7
3,431,543	-				-0.8
3,431,543	-				-0.1
3,431,543	-				+0.6
3,431,543	-				+0.8
3,431,561	+				-1.5
3,431,561	+				+0.2
3,431,569	-				-0.4
3,431,569	-				-0.7
3,431,810	-				-0.6
3,431,873	-				-0.2
3,431,887	-				-0.4
3,431,889	+				+2.4
3,431,889	+				-1.9
3,431,897	-				-0.1
3,431,976	-				+0.9
3,431,996	+				-0.3
3,432,059	-				-0.8
3,432,146	-				+0.2
3,432,152	-				+0.8
3,432,152	-				+1.6
3,432,154	+				-0.5
3,432,162	-				-1.7
3,432,162	-				-0.5
3,432,307	-		CCNA_03263	0.12	-1.0
3,432,347	+		CCNA_03263	0.14	-0.7
3,432,359	+		CCNA_03263	0.14	+0.2
3,432,359	+		CCNA_03263	0.14	-1.0
3,432,374	-		CCNA_03263	0.15	+0.8
3,432,392	-		CCNA_03263	0.15	+0.1
3,432,401	+		CCNA_03263	0.16	-0.3
3,432,401	+		CCNA_03263	0.16	+0.5
3,432,402	-		CCNA_03263	0.16	-1.2
3,432,408	+		CCNA_03263	0.16	-0.7
3,432,482	+		CCNA_03263	0.18	-1.0