Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02218

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
2,363,483	-		CCNA_02215	0.85	-0.2
2,363,483	-		CCNA_02215	0.85	-0.5
2,363,488	-		CCNA_02215	0.86	+0.5
2,363,490	+		CCNA_02215	0.86	+1.7
2,363,503	-		CCNA_02215	0.87	+0.5
2,363,530	+		CCNA_02215	0.89	+0.7
2,363,537	-		CCNA_02215	0.90	+1.5
2,363,538	-		CCNA_02215	0.90	+2.1
2,363,543	-				-0.0
2,363,561	-				+1.4
2,363,589	-				+0.4
2,363,625	-				-1.3
2,363,631	-				-0.5
2,363,635	+				+0.1
2,363,636	+				-1.5
2,363,669	+				-1.0
2,363,669	+				+0.9
2,363,669	+				+0.1
2,363,671	+				+0.1
2,363,677	-				+0.2
2,363,677	-				-0.6
2,363,679	+				-0.3
2,363,759	+		CCNA_02216	0.31	-0.1
2,363,767	-		CCNA_02216	0.34	-0.1
2,363,787	+		CCNA_02216	0.41	+0.0
2,363,795	+		CCNA_02216	0.43	+2.1
2,363,831	-		CCNA_02216	0.56	+1.1
2,363,850	+		CCNA_02216	0.62	+0.9
2,363,858	-		CCNA_02216	0.65	-2.0
2,363,876	-		CCNA_02216	0.71	-1.5
2,363,916	+		CCNA_02216	0.85	-1.8
2,363,940	-				+1.3
2,364,000	-				+0.5
2,364,066	-				+0.4
2,364,076	-				+0.9
2,364,077	+				-2.2
2,364,079	+				-0.1
2,364,087	-				+0.6
2,364,087	-				+1.1
2,364,087	-				+0.7
2,364,087	-				+0.9
2,364,099	+				+1.4
2,364,141	+		CCNA_02217	0.20	+0.1
2,364,149	-		CCNA_02217	0.22	-0.8
2,364,276	+		CCNA_02217	0.64	-1.7
2,364,334	+		CCNA_02217	0.83	-0.9
2,364,479	+				+0.2
2,364,487	-				-1.3
2,364,535	+				+0.0
2,364,555	+		CCNA_02218	0.10	-2.1
2,364,563	-		CCNA_02218	0.12	-1.1
2,364,563	-		CCNA_02218	0.12	+0.1
2,364,563	-		CCNA_02218	0.12	+1.2
2,364,611	+		CCNA_02218	0.19	+0.0
2,364,629	-		CCNA_02218	0.21	-0.6
2,364,629	-		CCNA_02218	0.21	-2.3
2,364,634	-		CCNA_02218	0.22	-0.8
2,364,634	-		CCNA_02218	0.22	+0.5
2,364,657	-		CCNA_02218	0.25	-1.8
2,364,659	+		CCNA_02218	0.25	+1.1
2,364,689	-		CCNA_02218	0.30	-2.2
2,364,689	-		CCNA_02218	0.30	-0.9
2,364,690	-		CCNA_02218	0.30	+1.1
2,364,691	-		CCNA_02218	0.30	-0.2
2,364,729	-		CCNA_02218	0.35	-0.9
2,364,729	-		CCNA_02218	0.35	-2.0
2,364,736	+		CCNA_02218	0.36	+0.2
2,364,831	+		CCNA_02218	0.50	-1.5
2,364,831	+		CCNA_02218	0.50	+0.5
2,364,873	-		CCNA_02218	0.56	+0.4
2,364,873	-		CCNA_02218	0.56	+0.7
2,364,981	+		CCNA_02218	0.72	+0.2
2,365,080	+		CCNA_02218	0.86	-1.1
2,365,137	-				-0.8
2,365,181	-				-0.8
2,365,208	-				-0.2
2,365,213	-				-2.1
2,365,213	-				+1.4
2,365,213	-				+0.2
2,365,282	+				-0.4
2,365,308	+				-0.9
2,365,344	+				-1.3
2,365,352	-				-2.4
2,365,352	-				+0.7
2,365,352	-				-1.8
2,365,465	+				-1.6
2,365,467	+				-1.4
2,365,472	+				-1.6
2,365,472	+				+2.0
2,365,473	-				-1.7
2,365,480	-				+0.4
2,365,480	-				+0.0
2,365,480	-				-0.9
2,365,496	+				-1.3
2,365,608	-		CCNA_02219	0.20	-0.4
2,365,613	-		CCNA_02219	0.21	+0.3
2,365,613	-		CCNA_02219	0.21	+1.4
2,365,625	+		CCNA_02219	0.22	+0.7
2,365,663	+		CCNA_02219	0.27	-2.1
2,365,669	+		CCNA_02219	0.28	-0.7
2,365,671	-		CCNA_02219	0.28	-0.9
2,365,671	-		CCNA_02219	0.28	-2.1
2,365,702	-		CCNA_02219	0.32	-0.8
2,365,713	-		CCNA_02219	0.33	-1.3
2,365,776	-		CCNA_02219	0.41	-1.3
2,365,778	+		CCNA_02219	0.41	-0.1
2,365,781	-		CCNA_02219	0.42	+2.3
2,365,783	+		CCNA_02219	0.42	-0.1
2,365,783	+		CCNA_02219	0.42	-1.3
2,365,783	+		CCNA_02219	0.42	-0.5
2,365,783	+		CCNA_02219	0.42	-1.5
2,365,783	+		CCNA_02219	0.42	+0.3
2,365,783	+		CCNA_02219	0.42	+0.0
2,365,791	-		CCNA_02219	0.43	-1.5
2,365,791	-		CCNA_02219	0.43	-0.6
2,365,791	-		CCNA_02219	0.43	+1.4
2,365,838	-		CCNA_02219	0.49	+1.2
2,365,841	+		CCNA_02219	0.49	-0.1
2,365,843	-		CCNA_02219	0.50	-1.2
2,365,849	-		CCNA_02219	0.50	+0.0
2,365,851	+		CCNA_02219	0.51	-0.0
2,365,896	-		CCNA_02219	0.56	-2.6
2,365,923	+		CCNA_02219	0.60	-1.1
2,365,931	-		CCNA_02219	0.61	-0.3
2,365,981	+		CCNA_02219	0.67	-0.7
2,365,981	+		CCNA_02219	0.67	-1.6
2,365,999	-		CCNA_02219	0.69	+2.7
2,366,031	-		CCNA_02219	0.74	+0.4
2,366,044	+		CCNA_02219	0.75	+0.3
2,366,044	+		CCNA_02219	0.75	-1.6
2,366,056	+		CCNA_02219	0.77	-0.4
2,366,079	-		CCNA_02219	0.80	-3.2
2,366,080	-		CCNA_02219	0.80	-1.9
2,366,098	+		CCNA_02219	0.82	+0.8
2,366,106	-		CCNA_02219	0.83	-1.0
2,366,163	+				-0.4
2,366,166	-				-1.0