Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02101

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
2,249,619	+		CCNA_02099	0.80	-0.2
2,249,619	+		CCNA_02099	0.80	+1.2
2,249,619	+		CCNA_02099	0.80	+0.3
2,249,627	-		CCNA_02099	0.81	+1.2
2,249,638	+		CCNA_02099	0.82	-1.1
2,249,668	-		CCNA_02099	0.84	-0.1
2,249,679	+		CCNA_02099	0.85	-0.4
2,249,741	+		CCNA_02099	0.89	-3.2
2,249,741	+		CCNA_02099	0.89	+0.4
2,249,741	+		CCNA_02099	0.89	+1.1
2,249,749	-		CCNA_02099	0.90	+0.4
2,249,784	-				-0.6
2,249,801	-				+2.3
2,249,816	+				-0.3
2,249,825	-				+0.9
2,249,880	+				-2.4
2,249,880	+				-1.2
2,249,883	-				+0.2
2,249,883	-				+1.2
2,249,888	-				+0.6
2,249,903	+				-0.8
2,249,955	-				+0.8
2,249,960	-				+1.4
2,250,041	-				-0.2
2,250,048	-				-0.2
2,250,179	-		CCNA_02100	0.34	-0.1
2,250,187	-		CCNA_02100	0.36	-0.1
2,250,212	-		CCNA_02100	0.41	+0.7
2,250,221	-		CCNA_02100	0.43	+0.6
2,250,231	-		CCNA_02100	0.45	+0.3
2,250,231	-		CCNA_02100	0.45	+0.6
2,250,248	+		CCNA_02100	0.49	+0.6
2,250,272	+		CCNA_02100	0.54	-0.3
2,250,363	+		CCNA_02100	0.72	-2.2
2,250,364	+		CCNA_02100	0.73	-0.1
2,250,382	+		CCNA_02100	0.76	-1.0
2,250,390	-		CCNA_02100	0.78	-0.3
2,250,409	+		CCNA_02100	0.82	-1.5
2,250,453	+				-0.1
2,250,461	-				-0.8
2,250,461	-				+0.9
2,250,530	+				-1.1
2,250,696	-		CCNA_02101	0.22	-1.3
2,250,708	-		CCNA_02101	0.25	+1.2
2,250,832	+		CCNA_02101	0.57	+0.1
2,250,841	-		CCNA_02101	0.59	-0.4
2,250,934	-		CCNA_02101	0.83	-1.0
2,250,934	-		CCNA_02101	0.83	-1.6
2,250,988	-				-0.3
2,251,041	+				+0.5
2,251,041	+				+0.3
2,251,041	+				-1.8
2,251,049	-				-1.7
2,251,051	+				-0.3
2,251,059	-				+1.6
2,251,059	-				+0.0
2,251,064	-				-1.0
2,251,072	-				+1.7
2,251,076	-				-2.2
2,251,107	-				+1.5
2,251,107	-				+1.2
2,251,161	+		CCNA_02102	0.15	+0.6
2,251,168	+		CCNA_02102	0.16	+0.6
2,251,168	+		CCNA_02102	0.16	+1.9
2,251,168	+		CCNA_02102	0.16	-1.0
2,251,230	-		CCNA_02102	0.22	-1.6
2,251,267	-		CCNA_02102	0.25	-1.1
2,251,281	+		CCNA_02102	0.26	+0.2
2,251,332	+		CCNA_02102	0.31	+0.2
2,251,366	+		CCNA_02102	0.35	-0.5
2,251,371	+		CCNA_02102	0.35	-0.6
2,251,379	-		CCNA_02102	0.36	+0.2
2,251,379	-		CCNA_02102	0.36	+0.0
2,251,379	-		CCNA_02102	0.36	+0.4
2,251,379	-		CCNA_02102	0.36	-0.2
2,251,379	-		CCNA_02102	0.36	-2.2
2,251,421	+		CCNA_02102	0.40	-0.9
2,251,421	+		CCNA_02102	0.40	-1.2
2,251,421	+		CCNA_02102	0.40	+0.7
2,251,424	-		CCNA_02102	0.40	+0.4
2,251,429	-		CCNA_02102	0.41	+1.4
2,251,444	-		CCNA_02102	0.42	-0.5
2,251,460	+		CCNA_02102	0.44	-0.4
2,251,460	+		CCNA_02102	0.44	-0.8
2,251,460	+		CCNA_02102	0.44	-0.6
2,251,460	+		CCNA_02102	0.44	+0.6
2,251,460	+		CCNA_02102	0.44	+1.0
2,251,468	-		CCNA_02102	0.44	-0.6
2,251,468	-		CCNA_02102	0.44	-0.7
2,251,486	+		CCNA_02102	0.46	-0.1
2,251,504	+		CCNA_02102	0.48	+0.7
2,251,514	+		CCNA_02102	0.49	-0.8
2,251,528	+		CCNA_02102	0.50	-1.0
2,251,530	-		CCNA_02102	0.50	-0.1
2,251,634	-		CCNA_02102	0.60	-2.0
2,251,645	-		CCNA_02102	0.61	-2.8
2,251,650	-		CCNA_02102	0.62	-0.7
2,251,668	-		CCNA_02102	0.64	-1.9
2,251,668	-		CCNA_02102	0.64	+1.4
2,251,688	+		CCNA_02102	0.65	-1.7
2,251,688	+		CCNA_02102	0.65	-0.3
2,251,701	-		CCNA_02102	0.67	-0.2
2,251,839	+				+1.9
2,251,873	-		CCNA_02102	0.83	-0.4
2,251,890	+		CCNA_02102	0.85	+1.2
2,251,895	+		CCNA_02102	0.85	-1.1
2,251,939	+		CCNA_02102	0.89	-0.4
2,251,941	+		CCNA_02102	0.90	+0.7