Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01918

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
2,060,381	-		CCNA_01917	0.35	-0.2
2,060,386	-		CCNA_01917	0.35	+0.5
2,060,386	-		CCNA_01917	0.35	-1.3
2,060,414	+		CCNA_01917	0.38	-0.1
2,060,441	+		CCNA_01917	0.40	-0.5
2,060,441	+		CCNA_01917	0.40	-0.2
2,060,441	+		CCNA_01917	0.40	+0.8
2,060,467	-		CCNA_01917	0.43	-0.7
2,060,496	+		CCNA_01917	0.45	-0.7
2,060,513	-		CCNA_01917	0.47	-1.1
2,060,518	+		CCNA_01917	0.47	-1.2
2,060,538	-				+2.9
2,060,603	-		CCNA_01917	0.55	-0.1
2,060,604	-		CCNA_01917	0.55	-0.6
2,060,621	+		CCNA_01917	0.56	+2.2
2,060,667	-		CCNA_01917	0.60	-1.9
2,060,718	-		CCNA_01917	0.65	-0.6
2,060,766	+		CCNA_01917	0.69	-0.3
2,060,769	-		CCNA_01917	0.69	+0.6
2,060,774	-		CCNA_01917	0.70	-1.1
2,060,774	-		CCNA_01917	0.70	-0.3
2,060,774	-		CCNA_01917	0.70	-0.6
2,060,774	-		CCNA_01917	0.70	+0.1
2,060,795	+		CCNA_01917	0.72	-1.3
2,060,795	+		CCNA_01917	0.72	+0.4
2,060,795	+		CCNA_01917	0.72	-0.9
2,060,796	+		CCNA_01917	0.72	-0.6
2,060,827	-		CCNA_01917	0.74	+1.3
2,060,840	-		CCNA_01917	0.76	+0.8
2,060,903	-		CCNA_01917	0.81	-1.2
2,060,903	-		CCNA_01917	0.81	+0.3
2,060,903	-		CCNA_01917	0.81	+0.2
2,060,925	+		CCNA_01917	0.83	+0.6
2,060,973	-		CCNA_01917	0.87	-0.8
2,060,986	+		CCNA_01917	0.89	-0.4
2,060,994	-		CCNA_01917	0.89	-1.4
2,060,994	-		CCNA_01917	0.89	-2.0
2,060,994	-		CCNA_01917	0.89	-1.8
2,061,015	-				+0.1
2,061,022	+				-0.5
2,061,036	+				+1.3
2,061,102	+				-0.3
2,061,135	+				+0.2
2,061,136	+				+0.4
2,061,136	+				-1.2
2,061,144	-				-0.2
2,061,179	-				-0.0
2,061,204	+				-0.5
2,061,235	-				+0.6
2,061,243	-				-1.9
2,061,258	-				-1.1
2,061,260	+				+0.5
2,061,268	-				+1.5
2,061,272	+				+0.2
2,061,298	+				+2.2
2,061,309	+				+1.9
2,061,317	-				+0.5
2,061,409	+				+1.5
2,061,417	-				+0.1
2,061,469	+				+0.7
2,061,477	-		CCNA_01918	0.10	-2.3
2,061,510	+		CCNA_01918	0.13	+1.8
2,061,510	+		CCNA_01918	0.13	+1.2
2,061,600	+		CCNA_01918	0.19	+1.5
2,061,632	+		CCNA_01918	0.22	+2.4
2,061,642	+		CCNA_01918	0.23	+1.5
2,061,642	+		CCNA_01918	0.23	+2.2
2,061,642	+		CCNA_01918	0.23	+1.5
2,061,649	+		CCNA_01918	0.23	+2.1
2,061,650	-		CCNA_01918	0.23	+0.6
2,061,650	-		CCNA_01918	0.23	-2.0
2,061,657	-		CCNA_01918	0.24	+1.1
2,061,657	-		CCNA_01918	0.24	-0.6
2,061,766	-		CCNA_01918	0.32	+0.6
2,061,768	+		CCNA_01918	0.32	+1.4
2,061,783	-		CCNA_01918	0.33	-0.4
2,061,837	+		CCNA_01918	0.37	+2.2
2,061,837	+		CCNA_01918	0.37	+2.1
2,061,837	+		CCNA_01918	0.37	+2.0
2,061,837	+		CCNA_01918	0.37	+1.7
2,061,845	-		CCNA_01918	0.38	-1.5
2,061,845	-		CCNA_01918	0.38	+1.0
2,061,845	-		CCNA_01918	0.38	-0.0
2,061,873	-		CCNA_01918	0.40	-1.0
2,061,939	-		CCNA_01918	0.45	-2.2
2,061,985	-		CCNA_01918	0.48	-1.2
2,062,013	+		CCNA_01918	0.51	+1.8
2,062,023	+		CCNA_01918	0.51	+1.6
2,062,023	+		CCNA_01918	0.51	+1.6
2,062,028	+		CCNA_01918	0.52	+1.6
2,062,031	-		CCNA_01918	0.52	-0.6
2,062,031	-		CCNA_01918	0.52	-0.8
2,062,080	+		CCNA_01918	0.56	+1.5
2,062,113	-		CCNA_01918	0.58	-1.3
2,062,177	+		CCNA_01918	0.63	+1.9
2,062,196	+		CCNA_01918	0.64	+2.0
2,062,196	+		CCNA_01918	0.64	+1.4
2,062,196	+		CCNA_01918	0.64	+1.6
2,062,217	+		CCNA_01918	0.66	+2.1
2,062,232	+		CCNA_01918	0.67	+2.1
2,062,260	-		CCNA_01918	0.69	-0.6
2,062,329	+		CCNA_01918	0.74	+2.1
2,062,337	-		CCNA_01918	0.75	-1.4
2,062,337	-		CCNA_01918	0.75	+0.3
2,062,338	+		CCNA_01918	0.75	+1.6
2,062,386	-		CCNA_01918	0.79	-0.2
2,062,434	+		CCNA_01918	0.82	+1.3
2,062,453	+		CCNA_01918	0.84	+1.8
2,062,477	-		CCNA_01918	0.86	-0.6
2,062,484	-		CCNA_01918	0.86	+1.1
2,062,539	-				-1.4
2,062,543	+				+2.8
2,062,546	-				+1.6
2,062,551	-				-0.7
2,062,558	+				+2.2
2,062,591	-				+0.2
2,062,621	-				-0.3
2,062,711	-				+0.5
2,062,813	-				-1.4
2,062,850	+		CCNA_01919	0.16	-0.1
2,062,853	-		CCNA_01919	0.16	-1.5
2,062,880	-		CCNA_01919	0.20	-0.4
2,062,913	-		CCNA_01919	0.25	+0.3
2,062,937	-		CCNA_01919	0.29	+0.1
2,062,938	-		CCNA_01919	0.29	+0.3
2,062,947	-		CCNA_01919	0.31	+0.0
2,062,973	-		CCNA_01919	0.35	+0.6
2,062,973	-		CCNA_01919	0.35	-0.2
2,062,973	-		CCNA_01919	0.35	-0.9
2,062,973	-		CCNA_01919	0.35	+0.2
2,062,973	-		CCNA_01919	0.35	-1.3
2,062,973	-		CCNA_01919	0.35	-0.5
2,062,973	-		CCNA_01919	0.35	+0.8
2,063,017	+		CCNA_01919	0.41	+0.7
2,063,052	+		CCNA_01919	0.47	+1.9
2,063,052	+		CCNA_01919	0.47	+1.8
2,063,060	-		CCNA_01919	0.48	+1.9
2,063,098	+		CCNA_01919	0.54	+0.7
2,063,103	+		CCNA_01919	0.55	+1.3
2,063,109	+		CCNA_01919	0.56	+2.0
2,063,124	+		CCNA_01919	0.58	+0.6
2,063,132	-		CCNA_01919	0.59	-1.6
2,063,132	-		CCNA_01919	0.59	-1.3
2,063,132	-		CCNA_01919	0.59	+0.3
2,063,154	-		CCNA_01919	0.63	+0.3
2,063,207	+		CCNA_01919	0.71	+0.6
2,063,207	+		CCNA_01919	0.71	+1.1
2,063,215	-		CCNA_01919	0.72	+0.7
2,063,215	-		CCNA_01919	0.72	-2.6
2,063,268	+		CCNA_01919	0.80	-0.1
2,063,268	+		CCNA_01919	0.80	-0.0
2,063,268	+		CCNA_01919	0.80	+1.6
2,063,268	+		CCNA_01919	0.80	+0.7
2,063,276	-		CCNA_01919	0.82	+1.0
2,063,276	-		CCNA_01919	0.82	+1.7
2,063,276	-		CCNA_01919	0.82	+1.2
2,063,347	-				-1.7
2,063,382	-				+0.7
2,063,418	+				+1.1
2,063,427	-				+0.6
2,063,438	+				+0.8
2,063,506	+				-1.9
2,063,521	-				+1.5
2,063,543	+				-1.4
2,063,570	-				+1.3
2,063,618	+				-0.8
2,063,621	-				+0.3
2,063,635	-				-0.1
2,063,644	-				-0.4
2,063,649	-				-0.2
2,063,649	-				-0.0
2,063,653	+				-0.6