Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01705

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
1,835,753	-		CCNA_01703	0.66	-0.5
1,835,772	+		CCNA_01703	0.68	+0.5
1,835,772	+		CCNA_01703	0.68	-0.2
1,835,772	+		CCNA_01703	0.68	-2.1
1,835,780	-		CCNA_01703	0.69	-0.9
1,835,780	-		CCNA_01703	0.69	+1.5
1,835,780	-		CCNA_01703	0.69	+1.1
1,835,802	+		CCNA_01703	0.71	-0.6
1,835,837	-		CCNA_01703	0.74	-1.6
1,835,839	+		CCNA_01703	0.74	-1.9
1,835,839	+		CCNA_01703	0.74	+0.0
1,835,847	-		CCNA_01703	0.75	+0.3
1,835,863	+		CCNA_01703	0.76	-0.7
1,835,876	-		CCNA_01703	0.78	+1.5
1,835,912	+		CCNA_01703	0.81	+0.3
1,835,936	-		CCNA_01703	0.83	+1.0
1,835,936	-		CCNA_01703	0.83	+0.0
1,835,950	+				+2.5
1,835,950	+		CCNA_01703	0.85	-0.9
1,835,950	+		CCNA_01703	0.85	+0.3
1,835,950	+		CCNA_01703	0.85	+1.7
1,835,950	+		CCNA_01703	0.85	-0.3
1,835,950	+		CCNA_01703	0.85	+1.4
1,835,958	-		CCNA_01703	0.85	+0.8
1,835,958	-		CCNA_01703	0.85	-1.1
1,835,958	-		CCNA_01703	0.85	-0.9
1,835,958	-		CCNA_01703	0.85	-0.2
1,835,964	-		CCNA_01703	0.86	-0.6
1,836,055	-				+0.1
1,836,074	-				+0.9
1,836,111	+				+2.0
1,836,111	+				-0.2
1,836,111	-				-0.5
1,836,119	-				+0.0
1,836,158	+				-2.0
1,836,178	+		CCNA_01704	0.11	-1.7
1,836,179	-		CCNA_01704	0.11	-1.0
1,836,183	+		CCNA_01704	0.12	-0.2
1,836,217	-		CCNA_01704	0.21	-1.0
1,836,285	-		CCNA_01704	0.40	+0.2
1,836,291	-		CCNA_01704	0.42	-0.2
1,836,298	+		CCNA_01704	0.44	+1.2
1,836,330	+		CCNA_01704	0.53	+1.3
1,836,332	-		CCNA_01704	0.53	+0.2
1,836,343	+		CCNA_01704	0.56	-2.2
1,836,351	-		CCNA_01704	0.58	-0.4
1,836,419	-		CCNA_01704	0.77	-0.5
1,836,435	+		CCNA_01704	0.82	+1.1
1,836,447	+		CCNA_01704	0.85	+0.5
1,836,469	+				+1.2
1,836,474	-				+0.3
1,836,486	-				-1.3
1,836,524	-				-0.4
1,836,614	-				-0.7
1,836,614	-				-0.8
1,836,620	+				-1.0
1,836,620	+				+0.3
1,836,649	+				+0.8
1,836,696	+				+3.0
1,836,696	+				-1.2
1,836,704	-				-0.1
1,836,704	-				-0.5
1,836,761	-				-1.3
1,836,794	-				-0.2
1,836,810	+		CCNA_01705	0.11	-0.5
1,836,829	+		CCNA_01705	0.13	-0.2
1,836,829	+		CCNA_01705	0.13	-0.4
1,836,830	+		CCNA_01705	0.13	+1.0
1,836,830	+		CCNA_01705	0.13	-0.4
1,836,830	+		CCNA_01705	0.13	-0.3
1,836,830	+		CCNA_01705	0.13	+0.9
1,836,835	+		CCNA_01705	0.13	+0.9
1,836,838	-		CCNA_01705	0.14	-1.7
1,836,843	-		CCNA_01705	0.14	+0.5
1,836,855	-		CCNA_01705	0.16	+1.6
1,836,874	-		CCNA_01705	0.18	-1.3
1,836,941	+		CCNA_01705	0.26	-1.6
1,836,942	+		CCNA_01705	0.26	+2.0
1,836,942	+		CCNA_01705	0.26	+0.3
1,836,942	+		CCNA_01705	0.26	+0.2
1,836,949	-		CCNA_01705	0.27	-2.0
1,836,949	-		CCNA_01705	0.27	-0.5
1,837,010	+		CCNA_01705	0.34	-1.7
1,837,011	+		CCNA_01705	0.34	-2.0
1,837,018	-		CCNA_01705	0.35	-0.5
1,837,081	+		CCNA_01705	0.43	+0.3
1,837,101	+		CCNA_01705	0.45	-0.2
1,837,101	+		CCNA_01705	0.45	-0.7
1,837,121	+		CCNA_01705	0.47	-0.9
1,837,139	+		CCNA_01705	0.49	-0.9
1,837,217	+		CCNA_01705	0.59	-1.5
1,837,264	-		CCNA_01705	0.64	-0.8
1,837,271	+		CCNA_01705	0.65	+0.6
1,837,362	-		CCNA_01705	0.76	+1.7
1,837,392	-		CCNA_01705	0.79	-0.5
1,837,400	+		CCNA_01705	0.80	+0.3
1,837,408	-		CCNA_01705	0.81	+1.0
1,837,448	+		CCNA_01705	0.86	-0.5
1,837,448	+		CCNA_01705	0.86	-1.3
1,837,506	+				-0.7
1,837,506	+				-1.3
1,837,511	+				-1.5
1,837,525	-				+0.3
1,837,541	-				-0.6
1,837,541	-				-0.2
1,837,546	-				-1.2
1,837,552	-				-0.6
1,837,566	-				+0.3
1,837,611	-				-3.1
1,837,676	-				-1.0
1,837,698	-				+1.6
1,837,698	-				+0.3
1,837,698	-				-0.0
1,837,755	+				+1.0
1,837,763	-				-0.5
1,837,851	+				+0.5
1,837,851	+				-0.5
1,837,861	+				-0.8
1,837,874	-				+1.0
1,837,896	+		CCNA_01706	0.10	-1.2
1,837,929	-		CCNA_01706	0.12	-1.5
1,837,954	+		CCNA_01706	0.14	-0.9
1,837,954	+		CCNA_01706	0.14	-1.3
1,837,954	+		CCNA_01706	0.14	+0.4
1,837,961	+		CCNA_01706	0.14	+0.3
1,837,961	-		CCNA_01706	0.14	-0.4
1,837,962	-		CCNA_01706	0.14	+1.0
1,837,962	-		CCNA_01706	0.14	-2.5
1,837,962	-		CCNA_01706	0.14	-1.3
1,837,962	-		CCNA_01706	0.14	-3.0
1,837,969	-		CCNA_01706	0.14	-1.5
1,837,991	+		CCNA_01706	0.16	-0.1
1,837,991	+		CCNA_01706	0.16	+0.0
1,837,997	+		CCNA_01706	0.16	+1.0
1,838,029	+		CCNA_01706	0.18	-1.2
1,838,029	+		CCNA_01706	0.18	-0.5
1,838,029	+		CCNA_01706	0.18	+0.3
1,838,029	+		CCNA_01706	0.18	+3.0
1,838,029	+				+2.7
1,838,029	+		CCNA_01706	0.18	+0.1
1,838,037	-		CCNA_01706	0.18	+0.5
1,838,037	-		CCNA_01706	0.18	-1.5
1,838,037	-		CCNA_01706	0.18	+0.2
1,838,037	-		CCNA_01706	0.18	+2.7
1,838,037	-		CCNA_01706	0.18	-0.1
1,838,037	-		CCNA_01706	0.18	-0.3
1,838,037	-		CCNA_01706	0.18	+1.0
1,838,039	+		CCNA_01706	0.18	-2.2
1,838,042	-		CCNA_01706	0.19	-1.8
1,838,062	-		CCNA_01706	0.20	-1.1
1,838,207	-		CCNA_01706	0.28	-0.5
1,838,207	-		CCNA_01706	0.28	+0.3
1,838,239	+		CCNA_01706	0.30	-0.8
1,838,239	+		CCNA_01706	0.30	+1.2
1,838,247	-		CCNA_01706	0.30	+0.6
1,838,247	-		CCNA_01706	0.30	-1.3
1,838,247	-		CCNA_01706	0.30	+1.2
1,838,268	+		CCNA_01706	0.32	+1.2
1,838,268	+		CCNA_01706	0.32	-1.1
1,838,268	+		CCNA_01706	0.32	-1.3
1,838,288	+		CCNA_01706	0.33	-0.2
1,838,288	+		CCNA_01706	0.33	+0.3
1,838,296	-		CCNA_01706	0.33	+0.7
1,838,337	+		CCNA_01706	0.36	-0.3
1,838,337	+		CCNA_01706	0.36	-0.4
1,838,345	-				+1.7
1,838,407	+		CCNA_01706	0.40	+1.0
1,838,415	+		CCNA_01706	0.40	+0.0
1,838,487	+		CCNA_01706	0.44	-1.4
1,838,495	-		CCNA_01706	0.45	+0.1
1,838,551	+		CCNA_01706	0.48	-0.9
1,838,551	+		CCNA_01706	0.48	+0.2
1,838,553	+		CCNA_01706	0.48	-1.4
1,838,553	+		CCNA_01706	0.48	-1.7
1,838,559	-		CCNA_01706	0.48	+2.0
1,838,559	-		CCNA_01706	0.48	+0.3
1,838,561	-		CCNA_01706	0.48	-0.7