Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01513

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
1,621,846	-				+0.3
1,621,871	-				+2.3
1,621,878	+				+0.2
1,621,891	-				-1.3
1,621,932	+				-0.9
1,621,940	+				+1.2
1,621,940	+				-1.3
1,621,940	-				-0.9
1,621,950	-				-0.3
1,621,963	-				-1.5
1,622,005	+		CCNA_01512	0.16	+0.0
1,622,005	+		CCNA_01512	0.16	-0.2
1,622,005	+		CCNA_01512	0.16	-0.4
1,622,005	+		CCNA_01512	0.16	-1.1
1,622,005	+		CCNA_01512	0.16	-0.7
1,622,019	+		CCNA_01512	0.18	-1.3
1,622,049	+		CCNA_01512	0.23	-0.2
1,622,125	+		CCNA_01512	0.34	-1.5
1,622,130	+		CCNA_01512	0.35	+0.7
1,622,138	-		CCNA_01512	0.36	+0.9
1,622,149	+		CCNA_01512	0.38	+2.1
1,622,157	-		CCNA_01512	0.39	-0.3
1,622,197	-		CCNA_01512	0.45	-0.4
1,622,217	-		CCNA_01512	0.48	-1.0
1,622,222	-		CCNA_01512	0.48	-1.2
1,622,222	-		CCNA_01512	0.48	-1.3
1,622,240	-		CCNA_01512	0.51	+1.6
1,622,252	-		CCNA_01512	0.53	+0.0
1,622,259	+		CCNA_01512	0.54	-0.3
1,622,261	+		CCNA_01512	0.54	+1.5
1,622,267	-		CCNA_01512	0.55	-0.5
1,622,269	-		CCNA_01512	0.56	-1.2
1,622,269	-		CCNA_01512	0.56	-1.3
1,622,269	-		CCNA_01512	0.56	-1.2
1,622,269	-		CCNA_01512	0.56	+0.3
1,622,293	+		CCNA_01512	0.59	-0.4
1,622,293	+		CCNA_01512	0.59	-0.7
1,622,293	+		CCNA_01512	0.59	+1.1
1,622,329	+		CCNA_01512	0.65	+0.8
1,622,329	+		CCNA_01512	0.65	+0.5
1,622,329	+		CCNA_01512	0.65	-0.5
1,622,357	+		CCNA_01512	0.69	+0.5
1,622,362	+		CCNA_01512	0.70	+0.4
1,622,376	-		CCNA_01512	0.72	-1.5
1,622,386	+		CCNA_01512	0.73	+0.8
1,622,386	+		CCNA_01512	0.73	-0.2
1,622,386	+		CCNA_01512	0.73	-0.2
1,622,386	+		CCNA_01512	0.73	-0.3
1,622,394	-		CCNA_01512	0.74	-0.7
1,622,439	-		CCNA_01512	0.81	-0.2
1,622,439	-		CCNA_01512	0.81	-0.8
1,622,484	-		CCNA_01512	0.88	+0.1
1,622,507	-				+0.0
1,622,517	-				-3.5
1,622,539	-				-1.2
1,622,551	-				+1.6
1,622,553	+				-2.6
1,622,662	-				-0.4
1,622,664	-				+0.2
1,622,664	-				+0.3
1,622,720	-				+0.1
1,622,776	+				-0.5
1,622,778	-				-1.7
1,622,835	-				+0.4
1,622,850	-				+0.3
1,622,850	-				+0.0
1,622,850	-				-1.0
1,622,859	-				-0.3
1,622,869	-				-1.6
1,622,869	-				-0.8
1,622,901	+				+0.1
1,622,909	-				-0.1
1,622,911	-				-0.7
1,622,911	-				-1.4
1,622,943	+		CCNA_01513	0.10	-0.1
1,622,956	+		CCNA_01513	0.11	+0.2
1,623,019	+		CCNA_01513	0.18	-0.6
1,623,026	+		CCNA_01513	0.19	-0.4
1,623,026	+		CCNA_01513	0.19	-1.4
1,623,026	+		CCNA_01513	0.19	-0.1
1,623,034	-		CCNA_01513	0.19	+0.9
1,623,109	+		CCNA_01513	0.27	-1.0
1,623,114	+		CCNA_01513	0.28	+1.6
1,623,114	+		CCNA_01513	0.28	+0.1
1,623,114	+		CCNA_01513	0.28	+1.2
1,623,117	-		CCNA_01513	0.28	-0.5
1,623,122	-		CCNA_01513	0.28	-1.7
1,623,127	-		CCNA_01513	0.29	-0.3
1,623,142	+		CCNA_01513	0.30	-0.6
1,623,155	-		CCNA_01513	0.32	-0.7
1,623,159	+		CCNA_01513	0.32	-0.6
1,623,165	-		CCNA_01513	0.33	+0.1
1,623,166	-		CCNA_01513	0.33	+1.1
1,623,180	-		CCNA_01513	0.34	+1.3
1,623,227	+		CCNA_01513	0.39	+0.6
1,623,227	+		CCNA_01513	0.39	-0.4
1,623,227	+		CCNA_01513	0.39	+0.6
1,623,235	-		CCNA_01513	0.40	-2.0
1,623,235	-		CCNA_01513	0.40	-1.7
1,623,235	-		CCNA_01513	0.40	-0.3
1,623,235	-		CCNA_01513	0.40	+0.1
1,623,235	-		CCNA_01513	0.40	+0.2
1,623,237	+		CCNA_01513	0.40	+0.6
1,623,237	+		CCNA_01513	0.40	+0.3
1,623,237	+		CCNA_01513	0.40	+1.1
1,623,237	+		CCNA_01513	0.40	+0.1
1,623,237	+		CCNA_01513	0.40	-0.9
1,623,245	-		CCNA_01513	0.41	+0.6
1,623,245	-		CCNA_01513	0.41	+0.3
1,623,245	-		CCNA_01513	0.41	+0.5
1,623,245	-		CCNA_01513	0.41	-1.0
1,623,245	-		CCNA_01513	0.41	-0.9
1,623,268	-		CCNA_01513	0.43	-1.6
1,623,269	-		CCNA_01513	0.43	-1.6
1,623,292	-		CCNA_01513	0.46	+0.2
1,623,299	-		CCNA_01513	0.46	+3.9
1,623,339	+		CCNA_01513	0.50	-1.4
1,623,339	+		CCNA_01513	0.50	+0.0
1,623,339	+		CCNA_01513	0.50	+1.1
1,623,339	+		CCNA_01513	0.50	+1.2
1,623,347	-		CCNA_01513	0.51	-0.7
1,623,375	+		CCNA_01513	0.54	-0.4
1,623,396	+		CCNA_01513	0.56	-0.3
1,623,415	+		CCNA_01513	0.58	-0.9
1,623,417	+		CCNA_01513	0.58	-0.3
1,623,442	+		CCNA_01513	0.61	-1.1
1,623,450	-		CCNA_01513	0.62	-2.3
1,623,452	-		CCNA_01513	0.62	-0.4
1,623,472	+		CCNA_01513	0.64	+0.5
1,623,485	+		CCNA_01513	0.65	-0.3
1,623,517	+		CCNA_01513	0.68	+0.1
1,623,517	+		CCNA_01513	0.68	-0.1
1,623,541	-		CCNA_01513	0.71	-1.6
1,623,554	-		CCNA_01513	0.72	-1.5
1,623,569	+		CCNA_01513	0.74	-0.7
1,623,569	+		CCNA_01513	0.74	-1.2
1,623,577	-		CCNA_01513	0.75	+0.1
1,623,577	-		CCNA_01513	0.75	+1.3
1,623,577	-		CCNA_01513	0.75	-1.8
1,623,577	-		CCNA_01513	0.75	-1.2
1,623,577	-		CCNA_01513	0.75	+1.0
1,623,579	+		CCNA_01513	0.75	-1.4
1,623,589	+		CCNA_01513	0.76	-0.1
1,623,589	+		CCNA_01513	0.76	+0.0
1,623,597	-		CCNA_01513	0.77	-0.4
1,623,597	-		CCNA_01513	0.77	+1.3
1,623,597	-		CCNA_01513	0.77	+0.8
1,623,655	+		CCNA_01513	0.83	-0.2
1,623,659	-		CCNA_01513	0.83	-0.7
1,623,673	-		CCNA_01513	0.84	+1.6
1,623,719	+		CCNA_01513	0.89	+0.1
1,623,744	+				-1.6
1,623,777	-				-1.2
1,623,777	-				-1.1
1,623,808	+				-0.8
1,623,821	+				+0.2
1,623,826	+				+0.8
1,623,826	+				+0.5
1,623,829	-				-0.7
1,623,829	-				+1.3
1,623,834	-				-1.6
1,623,834	-				-2.4
1,623,834	-				-1.7
1,623,871	+				-0.5
1,623,871	+				+0.7
1,623,871	+				-1.4
1,623,871	+				-0.4
1,623,871	+				-1.7
1,623,871	+				+0.9
1,623,879	-		CCNA_01514	0.11	-1.2
1,623,936	-		CCNA_01514	0.23	+1.9
1,623,960	+		CCNA_01514	0.27	-0.7
1,623,984	+		CCNA_01514	0.32	+0.3
1,624,003	+		CCNA_01514	0.36	-0.4
1,624,006	-		CCNA_01514	0.37	+1.6
1,624,046	-		CCNA_01514	0.45	-1.5
1,624,103	+		CCNA_01514	0.56	+0.9
1,624,127	+		CCNA_01514	0.61	-0.3
1,624,127	+		CCNA_01514	0.61	-1.3
1,624,135	-		CCNA_01514	0.62	-1.4
1,624,137	+		CCNA_01514	0.63	+1.5
1,624,137	+		CCNA_01514	0.63	-2.7
1,624,145	-		CCNA_01514	0.64	+1.1
1,624,172	+		CCNA_01514	0.70	+0.3
1,624,176	-		CCNA_01514	0.70	-0.4
1,624,181	-		CCNA_01514	0.71	-1.3
1,624,196	+		CCNA_01514	0.74	+1.3
1,624,243	+		CCNA_01514	0.84	+1.6
1,624,312	+				+1.3
1,624,317	+				+1.3
1,624,339	-				-0.8
1,624,345	+				+2.1
1,624,353	-				+0.1
1,624,363	-				+0.5
1,624,376	-				+1.1
1,624,406	-				-2.3
1,624,426	+				-1.5
1,624,430	+				-1.1
1,624,466	-		CCNA_01515	0.12	-0.2
1,624,569	+		CCNA_01515	0.20	+1.8
1,624,596	+		CCNA_01515	0.22	+0.9
1,624,619	+		CCNA_01515	0.24	+0.0
1,624,661	-		CCNA_01515	0.27	+0.6
1,624,661	-		CCNA_01515	0.27	-1.6
1,624,666	+		CCNA_01515	0.27	-0.7
1,624,679	-		CCNA_01515	0.28	+0.8
1,624,721	+		CCNA_01515	0.32	-1.4
1,624,772	-		CCNA_01515	0.36	-1.5
1,624,791	+		CCNA_01515	0.37	+2.2