Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01342

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
1,454,956	+		CCNA_01341	0.38	+2.0
1,454,961	+		CCNA_01341	0.39	+1.8
1,454,966	+		CCNA_01341	0.39	+0.2
1,454,966	+		CCNA_01341	0.39	-0.3
1,454,966	+		CCNA_01341	0.39	+1.2
1,454,966	+		CCNA_01341	0.39	+0.9
1,454,966	+		CCNA_01341	0.39	-0.3
1,454,974	-		CCNA_01341	0.39	-0.2
1,454,974	-		CCNA_01341	0.39	-0.1
1,454,974	-		CCNA_01341	0.39	-1.4
1,455,048	-		CCNA_01341	0.45	-0.2
1,455,116	+		CCNA_01341	0.49	+1.2
1,455,155	+		CCNA_01341	0.52	+0.5
1,455,211	+		CCNA_01341	0.56	+0.9
1,455,216	-		CCNA_01341	0.57	-2.1
1,455,253	+		CCNA_01341	0.59	+0.5
1,455,262	-		CCNA_01341	0.60	+0.8
1,455,320	+		CCNA_01341	0.64	+1.7
1,455,320	+		CCNA_01341	0.64	+1.3
1,455,337	+		CCNA_01341	0.65	+1.9
1,455,356	+		CCNA_01341	0.66	+0.2
1,455,356	+		CCNA_01341	0.66	+1.8
1,455,364	-		CCNA_01341	0.67	-0.8
1,455,364	-		CCNA_01341	0.67	+0.1
1,455,364	-		CCNA_01341	0.67	+0.8
1,455,364	-		CCNA_01341	0.67	-1.5
1,455,364	-		CCNA_01341	0.67	-0.6
1,455,372	+		CCNA_01341	0.68	+0.5
1,455,380	-		CCNA_01341	0.68	+0.7
1,455,423	+		CCNA_01341	0.71	+0.8
1,455,472	-		CCNA_01341	0.75	+0.6
1,455,493	+		CCNA_01341	0.76	+0.9
1,455,566	-		CCNA_01341	0.81	+0.3
1,455,669	-		CCNA_01341	0.88	-0.5
1,455,678	-		CCNA_01341	0.89	+0.8
1,455,714	+				+1.0
1,455,714	+				+1.1
1,455,722	-				+0.9
1,455,722	-				-0.5
1,455,723	-				+0.2
1,455,725	+				+0.1
1,455,730	+				+2.2
1,455,730	+				+1.6
1,455,730	+				+0.8
1,455,826	+				+1.0
1,455,826	+				+0.7
1,455,826	+				+0.5
1,455,833	+				+1.1
1,455,834	-				-1.0
1,455,834	-				-2.4
1,455,834	-				+0.2
1,455,841	-				+0.3
1,455,868	+				+0.6
1,455,887	-				-2.5
1,455,902	-				-0.6
1,455,936	+				+0.5
1,455,936	+				+0.5
1,455,944	-				-0.4
1,455,944	-				+0.2
1,455,962	+				+0.8
1,455,970	-				-0.1
1,455,970	-				-0.3
1,455,985	+				+0.3
1,456,007	-				-0.5
1,456,145	+		CCNA_01342	0.15	+0.8
1,456,172	+		CCNA_01342	0.17	-0.7
1,456,198	+		CCNA_01342	0.19	+0.3
1,456,204	-		CCNA_01342	0.19	+0.6
1,456,204	-		CCNA_01342	0.19	-1.4
1,456,226	+		CCNA_01342	0.21	-1.3
1,456,269	+		CCNA_01342	0.24	-0.4
1,456,320	+		CCNA_01342	0.28	-0.2
1,456,323	+		CCNA_01342	0.29	+0.5
1,456,330	+		CCNA_01342	0.29	+2.2
1,456,330	+		CCNA_01342	0.29	-0.4
1,456,330	+		CCNA_01342	0.29	+0.9
1,456,330	+		CCNA_01342	0.29	-0.8
1,456,330	+		CCNA_01342	0.29	+0.5
1,456,342	+		CCNA_01342	0.30	+0.3
1,456,357	+		CCNA_01342	0.31	+0.1
1,456,375	-		CCNA_01342	0.33	-1.3
1,456,380	+		CCNA_01342	0.33	+0.2
1,456,396	-		CCNA_01342	0.34	-0.2
1,456,423	+		CCNA_01342	0.36	+0.3
1,456,548	-		CCNA_01342	0.46	-0.4
1,456,572	+		CCNA_01342	0.48	+0.4
1,456,583	+		CCNA_01342	0.49	+0.4
1,456,591	-		CCNA_01342	0.49	+1.6
1,456,595	+		CCNA_01342	0.49	+0.4
1,456,632	-		CCNA_01342	0.52	-0.8
1,456,665	+		CCNA_01342	0.55	+1.3
1,456,665	+		CCNA_01342	0.55	+2.9
1,456,665	+		CCNA_01342	0.55	+0.8
1,456,673	-		CCNA_01342	0.55	+0.8
1,456,673	-		CCNA_01342	0.55	+0.5
1,456,673	-		CCNA_01342	0.55	+2.3
1,456,673	-		CCNA_01342	0.55	-0.9
1,456,684	-		CCNA_01342	0.56	-0.7
1,456,686	+		CCNA_01342	0.56	+0.8
1,456,690	+		CCNA_01342	0.57	-1.7
1,456,699	-		CCNA_01342	0.57	-0.7
1,456,712	+		CCNA_01342	0.58	-0.0
1,456,720	-		CCNA_01342	0.59	-0.5
1,456,720	-		CCNA_01342	0.59	+0.9
1,456,720	-		CCNA_01342	0.59	-0.7
1,456,720	-		CCNA_01342	0.59	+0.9
1,456,720	-		CCNA_01342	0.59	+0.7
1,456,743	-		CCNA_01342	0.61	-1.8
1,456,811	+		CCNA_01342	0.66	-0.8
1,456,904	+		CCNA_01342	0.73	+1.0
1,456,904	+		CCNA_01342	0.73	+0.7
1,456,925	+		CCNA_01342	0.75	-1.6
1,456,925	+		CCNA_01342	0.75	-1.2
1,456,926	+		CCNA_01342	0.75	-0.2
1,456,934	-		CCNA_01342	0.75	-0.3
1,456,961	+				+1.3
1,456,969	-		CCNA_01342	0.78	-0.9
1,456,969	-		CCNA_01342	0.78	-0.8
1,456,969	-		CCNA_01342	0.78	-1.3
1,457,023	-		CCNA_01342	0.82	+1.8
1,457,071	-		CCNA_01342	0.86	-0.2
1,457,075	+		CCNA_01342	0.86	+1.3
1,457,083	-		CCNA_01342	0.87	-0.7
1,457,117	-		CCNA_01342	0.90	+0.1
1,457,149	+				-1.3
1,457,174	+				-0.1
1,457,194	+				-1.0
1,457,202	+				-1.7
1,457,202	-				-0.9
1,457,242	-				+0.9
1,457,254	-				+2.3
1,457,256	+				+0.1
1,457,284	+				-0.8
1,457,290	+				+0.5
1,457,292	-				+0.2
1,457,342	+		CCNA_01343	0.11	-0.8
1,457,354	+		CCNA_01343	0.13	+2.0
1,457,367	-		CCNA_01343	0.15	-1.0
1,457,386	+		CCNA_01343	0.17	+0.8
1,457,430	-		CCNA_01343	0.22	+1.2
1,457,436	-		CCNA_01343	0.23	+0.0
1,457,444	+		CCNA_01343	0.24	+0.5
1,457,457	-		CCNA_01343	0.26	+0.1
1,457,457	-		CCNA_01343	0.26	+1.1
1,457,481	+		CCNA_01343	0.29	-0.0
1,457,482	+		CCNA_01343	0.29	-0.6
1,457,490	-		CCNA_01343	0.30	-0.2
1,457,504	+		CCNA_01343	0.31	+0.4
1,457,539	+		CCNA_01343	0.36	+0.1
1,457,563	+		CCNA_01343	0.39	-0.2
1,457,571	-		CCNA_01343	0.40	+0.8
1,457,586	-		CCNA_01343	0.41	+0.3
1,457,595	+		CCNA_01343	0.43	+0.3
1,457,622	+		CCNA_01343	0.46	+0.5
1,457,684	+		CCNA_01343	0.54	+0.5
1,457,692	-		CCNA_01343	0.54	-2.1
1,457,770	-		CCNA_01343	0.64	-0.5
1,457,776	+		CCNA_01343	0.65	+0.2
1,457,789	-		CCNA_01343	0.66	-1.2
1,457,850	-		CCNA_01343	0.74	-0.3
1,457,909	+		CCNA_01343	0.81	-0.7
1,457,917	-		CCNA_01343	0.82	-1.5
1,458,005	-				+0.9
1,458,029	-				+0.1
1,458,039	-				-1.1
1,458,055	+				+0.5
1,458,055	+				-1.4
1,458,064	-				-1.3
1,458,072	+				+1.5
1,458,090	+				+0.2
1,458,090	+				+0.0
1,458,090	-				-1.0
1,458,090	-				+0.5
1,458,098	-				-0.8
1,458,100	+				+1.1
1,458,176	+		CCNA_01344	0.24	-0.2
1,458,185	+		CCNA_01344	0.26	+0.7
1,458,203	+		CCNA_01344	0.29	-0.7