Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01259

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
1,385,327	+		CCNA_01257	0.81	+0.5
1,385,328	-		CCNA_01257	0.81	+0.5
1,385,330	-		CCNA_01257	0.81	+0.2
1,385,389	-		CCNA_01257	0.87	-1.8
1,385,398	-		CCNA_01257	0.88	-0.6
1,385,464	-				+0.3
1,385,559	+				-0.4
1,385,611	-		CCNA_01258	0.15	+0.7
1,385,641	+		CCNA_01258	0.20	-0.1
1,385,641	+		CCNA_01258	0.20	+0.0
1,385,646	+		CCNA_01258	0.21	-0.5
1,385,670	+		CCNA_01258	0.24	-0.6
1,385,692	+		CCNA_01258	0.28	-0.4
1,385,702	+		CCNA_01258	0.29	+1.0
1,385,741	+		CCNA_01258	0.35	-0.9
1,385,741	+		CCNA_01258	0.35	-1.8
1,385,750	+		CCNA_01258	0.36	+0.1
1,385,819	+		CCNA_01258	0.47	-0.8
1,385,819	+		CCNA_01258	0.47	-0.6
1,385,819	+		CCNA_01258	0.47	+0.2
1,385,827	-		CCNA_01258	0.48	-1.8
1,385,827	-		CCNA_01258	0.48	+0.1
1,385,847	+		CCNA_01258	0.51	+0.4
1,385,849	-		CCNA_01258	0.51	+0.5
1,385,855	-		CCNA_01258	0.52	-0.5
1,385,874	+		CCNA_01258	0.55	-2.4
1,385,882	-		CCNA_01258	0.56	+0.7
1,385,884	+		CCNA_01258	0.57	+1.0
1,385,920	+		CCNA_01258	0.62	-0.4
1,385,928	-		CCNA_01258	0.63	-0.5
1,385,928	-		CCNA_01258	0.63	-0.9
1,385,928	-		CCNA_01258	0.63	-0.5
1,385,928	-		CCNA_01258	0.63	-0.1
1,385,955	-		CCNA_01258	0.67	-1.5
1,386,019	+		CCNA_01258	0.77	-0.2
1,386,026	+		CCNA_01258	0.78	+0.9
1,386,027	-		CCNA_01258	0.78	-1.1
1,386,075	+		CCNA_01258	0.85	-2.0
1,386,113	+				-0.3
1,386,128	+				-1.7
1,386,136	-				+1.2
1,386,258	-				+1.8
1,386,278	+				-1.6
1,386,296	-				-1.1
1,386,309	+				-0.3
1,386,309	+				-1.3
1,386,309	+				-0.4
1,386,318	-				-0.6
1,386,330	-				-0.1
1,386,333	+				+0.6
1,386,343	+				+0.4
1,386,343	+				-0.1
1,386,375	-				-1.0
1,386,377	+				+0.3
1,386,425	+		CCNA_01259	0.13	+0.6
1,386,433	-		CCNA_01259	0.14	-0.7
1,386,435	+		CCNA_01259	0.14	+0.5
1,386,443	-		CCNA_01259	0.15	+1.7
1,386,460	+		CCNA_01259	0.17	-1.2
1,386,512	-		CCNA_01259	0.24	+1.0
1,386,529	+		CCNA_01259	0.26	+1.1
1,386,550	-		CCNA_01259	0.29	-0.1
1,386,553	+		CCNA_01259	0.29	-0.3
1,386,584	+		CCNA_01259	0.33	+0.4
1,386,619	+		CCNA_01259	0.38	+0.8
1,386,665	+		CCNA_01259	0.44	+1.3
1,386,673	-		CCNA_01259	0.45	+0.5
1,386,701	+		CCNA_01259	0.48	-0.0
1,386,815	+		CCNA_01259	0.63	+1.1
1,386,827	-		CCNA_01259	0.65	-0.6
1,386,899	+		CCNA_01259	0.74	+0.6
1,386,902	-		CCNA_01259	0.74	-0.3
1,386,999	-		CCNA_01259	0.87	+1.3
1,387,019	+		CCNA_01259	0.90	+0.7
1,387,042	+				+1.3
1,387,042	+				+1.3
1,387,065	+				+1.1
1,387,113	-				+1.2
1,387,193	+				-2.0
1,387,211	+				-0.5
1,387,214	-		CCNA_01260	0.10	-1.9
1,387,221	-		CCNA_01260	0.11	+1.1
1,387,321	+		CCNA_01260	0.24	-0.3
1,387,325	+		CCNA_01260	0.25	-1.3
1,387,429	-		CCNA_01260	0.39	-1.0
1,387,431	+		CCNA_01260	0.39	-1.5
1,387,439	-		CCNA_01260	0.40	+1.0
1,387,475	+				+1.5
1,387,475	+		CCNA_01260	0.45	-1.9
1,387,475	+		CCNA_01260	0.45	+1.4
1,387,483	-		CCNA_01260	0.46	+1.0
1,387,483	-		CCNA_01260	0.46	+2.6
1,387,533	+		CCNA_01260	0.53	-0.9
1,387,536	-		CCNA_01260	0.53	+0.2
1,387,546	-		CCNA_01260	0.54	-0.1
1,387,561	+		CCNA_01260	0.56	-1.1
1,387,561	-				+1.5
1,387,609	-		CCNA_01260	0.63	+1.6
1,387,609	-		CCNA_01260	0.63	+1.7
1,387,667	+		CCNA_01260	0.71	-1.5
1,387,673	+		CCNA_01260	0.71	-0.4
1,387,673	+		CCNA_01260	0.71	-1.2
1,387,675	-		CCNA_01260	0.72	-1.3
1,387,705	+		CCNA_01260	0.76	-2.4
1,387,705	+		CCNA_01260	0.76	-0.7
1,387,705	+		CCNA_01260	0.76	+0.1
1,387,710	+		CCNA_01260	0.76	-1.1
1,387,710	+		CCNA_01260	0.76	+0.8
1,387,710	+		CCNA_01260	0.76	-1.0
1,387,710	+		CCNA_01260	0.76	-1.4
1,387,710	+		CCNA_01260	0.76	-1.4
1,387,710	+		CCNA_01260	0.76	-0.8
1,387,710	+		CCNA_01260	0.76	-1.4
1,387,710	+		CCNA_01260	0.76	+1.0
1,387,710	+		CCNA_01260	0.76	-0.0
1,387,718	-		CCNA_01260	0.77	-1.1
1,387,718	-		CCNA_01260	0.77	-1.7
1,387,718	-		CCNA_01260	0.77	-0.3
1,387,718	-		CCNA_01260	0.77	+0.7
1,387,784	+		CCNA_01260	0.86	-1.7
1,387,791	+		CCNA_01260	0.87	+0.1
1,387,792	-		CCNA_01260	0.87	+0.1
1,387,835	-				-1.4
1,387,900	-				-0.9
1,387,908	-				-1.4
1,387,936	+				-1.9
1,387,936	+				-1.5
1,387,936	+				-1.7
1,387,936	+				-0.9
1,387,936	+				-0.8
1,387,936	+				-0.1
1,387,944	-				-1.1
1,387,944	-				-0.4
1,387,944	-				+0.0
1,387,944	-				-1.0
1,387,944	-				-0.5
1,387,944	-				-0.5
1,387,944	-				-0.8
1,387,944	-				-0.6
1,387,944	-				+0.9
1,387,944	-				+0.2
1,387,944	-				-0.6
1,387,944	-				+0.4
1,387,944	-				-1.4
1,387,973	-				-0.9
1,388,029	+				+0.5
1,388,041	+				-0.1
1,388,060	-				-0.4
1,388,060	-				-0.8
1,388,073	+				-1.4