Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00995

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
1,076,242	+		CCNA_00994	0.50	+0.7
1,076,244	+		CCNA_00994	0.50	-0.8
1,076,330	+		CCNA_00994	0.55	-0.9
1,076,341	+		CCNA_00994	0.56	+1.5
1,076,372	-		CCNA_00994	0.58	-0.1
1,076,372	-		CCNA_00994	0.58	+1.4
1,076,418	-				+1.5
1,076,418	-		CCNA_00994	0.60	+1.5
1,076,418	-		CCNA_00994	0.60	-0.8
1,076,420	+		CCNA_00994	0.61	+0.2
1,076,420	+		CCNA_00994	0.61	-0.1
1,076,420	+		CCNA_00994	0.61	-1.1
1,076,459	-		CCNA_00994	0.63	+0.0
1,076,471	+		CCNA_00994	0.64	+0.2
1,076,471	+		CCNA_00994	0.64	-0.1
1,076,493	-		CCNA_00994	0.65	-0.8
1,076,500	-		CCNA_00994	0.65	-1.1
1,076,509	-		CCNA_00994	0.66	+1.4
1,076,521	+		CCNA_00994	0.67	+0.0
1,076,529	-		CCNA_00994	0.67	+0.3
1,076,534	-		CCNA_00994	0.67	+0.9
1,076,546	-		CCNA_00994	0.68	-0.7
1,076,606	+		CCNA_00994	0.72	-0.5
1,076,614	-		CCNA_00994	0.72	+0.3
1,076,632	+		CCNA_00994	0.73	+0.2
1,076,662	-		CCNA_00994	0.75	+0.2
1,076,675	+		CCNA_00994	0.76	-1.5
1,076,693	+		CCNA_00994	0.77	-1.1
1,076,703	+		CCNA_00994	0.78	+0.5
1,076,764	-		CCNA_00994	0.81	-1.1
1,076,766	-		CCNA_00994	0.81	+0.5
1,076,766	-		CCNA_00994	0.81	+0.5
1,076,771	-		CCNA_00994	0.82	-1.3
1,076,791	-		CCNA_00994	0.83	+0.7
1,076,844	+		CCNA_00994	0.86	-0.3
1,076,844	+		CCNA_00994	0.86	+1.5
1,076,873	+		CCNA_00994	0.88	-0.5
1,076,881	-		CCNA_00994	0.88	-0.1
1,076,881	-		CCNA_00994	0.88	-0.2
1,076,908	-		CCNA_00994	0.90	-0.7
1,076,925	+				-0.6
1,076,927	+				+0.2
1,076,936	+				-0.3
1,076,936	+				+0.0
1,076,936	+				-0.3
1,076,936	+				-0.8
1,076,936	+				-0.1
1,076,944	-				+0.2
1,076,979	+				-1.4
1,076,979	+				-0.8
1,076,987	-				-0.7
1,076,987	-				+0.6
1,076,987	-				-0.3
1,076,987	-				+0.8
1,077,051	-				+1.5
1,077,051	-				+0.4
1,077,113	+				+1.9
1,077,143	+				-0.7
1,077,143	+				-1.1
1,077,151	-				+0.1
1,077,235	+				-2.3
1,077,243	-				-0.1
1,077,245	+				+0.9
1,077,253	-				-0.1
1,077,263	+				+0.3
1,077,271	+				+1.9
1,077,271	-				-0.9
1,077,301	-				-1.1
1,077,311	-				-1.0
1,077,311	-				-1.0
1,077,352	+				-1.2
1,077,353	+				+2.3
1,077,353	+				+0.5
1,077,358	+				+1.0
1,077,358	+				-2.6
1,077,360	-				+1.5
1,077,361	-				+1.3
1,077,361	-				-1.0
1,077,366	-				-0.2
1,077,366	-				+0.2
1,077,441	-		CCNA_00995	0.15	-0.3
1,077,451	+		CCNA_00995	0.16	-0.1
1,077,451	+		CCNA_00995	0.16	-1.6
1,077,455	+		CCNA_00995	0.16	-0.1
1,077,477	-		CCNA_00995	0.18	+1.9
1,077,539	-		CCNA_00995	0.22	-1.1
1,077,551	+		CCNA_00995	0.23	-0.2
1,077,551	+		CCNA_00995	0.23	-1.6
1,077,603	+		CCNA_00995	0.27	+0.5
1,077,603	+		CCNA_00995	0.27	-2.6
1,077,633	+		CCNA_00995	0.29	-1.3
1,077,633	+		CCNA_00995	0.29	+0.4
1,077,642	+		CCNA_00995	0.30	-1.6
1,077,670	+		CCNA_00995	0.32	+1.3
1,077,670	+		CCNA_00995	0.32	+0.3
1,077,678	-		CCNA_00995	0.33	-0.7
1,077,678	-		CCNA_00995	0.33	-1.5
1,077,678	-		CCNA_00995	0.33	+0.3
1,077,678	-		CCNA_00995	0.33	-2.0
1,077,710	-				+0.7
1,077,743	+		CCNA_00995	0.38	+0.9
1,077,753	+		CCNA_00995	0.38	-1.1
1,077,759	-		CCNA_00995	0.39	-0.7
1,077,761	-		CCNA_00995	0.39	+1.5
1,077,771	+		CCNA_00995	0.40	+0.9
1,077,772	+		CCNA_00995	0.40	+1.0
1,077,777	+		CCNA_00995	0.40	-1.9
1,077,781	+		CCNA_00995	0.40	-0.7
1,077,783	+		CCNA_00995	0.41	+2.3
1,077,789	-		CCNA_00995	0.41	-0.7
1,077,836	-		CCNA_00995	0.44	+2.3
1,077,852	+		CCNA_00995	0.46	-1.5
1,077,874	+		CCNA_00995	0.47	-1.8
1,077,889	-		CCNA_00995	0.48	-1.1
1,077,896	+		CCNA_00995	0.49	-0.1
1,077,923	+		CCNA_00995	0.51	-1.2
1,077,958	+		CCNA_00995	0.54	-0.1
1,077,968	+		CCNA_00995	0.54	+0.0
1,077,968	+		CCNA_00995	0.54	-0.5
1,077,973	+		CCNA_00995	0.55	-0.2
1,077,976	-		CCNA_00995	0.55	+0.3
1,077,978	+		CCNA_00995	0.55	-2.0
1,077,988	-		CCNA_00995	0.56	+0.0
1,078,011	-		CCNA_00995	0.58	-1.3
1,078,036	-		CCNA_00995	0.59	-1.4
1,078,038	+		CCNA_00995	0.60	-1.1
1,078,046	-		CCNA_00995	0.60	-1.1
1,078,068	+		CCNA_00995	0.62	-1.1
1,078,068	+		CCNA_00995	0.62	+1.0
1,078,155	+		CCNA_00995	0.68	-0.4
1,078,195	-		CCNA_00995	0.71	-1.2
1,078,290	-		CCNA_00995	0.79	-1.4
1,078,353	+		CCNA_00995	0.83	+0.4
1,078,353	-		CCNA_00995	0.83	+0.5
1,078,362	+		CCNA_00995	0.84	-0.9
1,078,370	-		CCNA_00995	0.84	+1.7
1,078,386	-		CCNA_00995	0.86	+1.2
1,078,393	+		CCNA_00995	0.86	+2.3
1,078,394	+		CCNA_00995	0.86	-1.1
1,078,407	+		CCNA_00995	0.87	+0.4
1,078,409	-		CCNA_00995	0.87	+0.3
1,078,413	-		CCNA_00995	0.88	-0.9
1,078,447	+				+0.0
1,078,447	+				+0.6
1,078,455	-				-0.9
1,078,455	-				-0.5
1,078,475	+				-1.6
1,078,493	+				+1.0
1,078,528	+				-1.3
1,078,570	+				-1.0
1,078,572	+				-0.9
1,078,572	+				+0.3
1,078,572	+				-0.3
1,078,578	-				+0.5
1,078,580	-				-0.4
1,078,603	-				-2.4
1,078,603	-				+0.7
1,078,617	+				+0.9
1,078,625	-				-0.5
1,078,640	-				-0.1
1,078,652	+				+1.3
1,078,652	+				-1.2
1,078,652	+				-0.8
1,078,660	-				-1.8
1,078,660	-				+0.2
1,078,660	-				+0.5
1,078,660	-				+0.9
1,078,660	-				-0.8
1,078,660	-				+0.8
1,078,660	-				-0.5
1,078,663	+				-1.4
1,078,663	+				-0.1
1,078,663	+				+0.4
1,078,663	+				-0.6
1,078,671	-				-2.5
1,078,671	-				-0.6
1,078,671	-				+0.0
1,078,671	-				-0.5
1,078,671	-				-1.7
1,078,671	-				+0.4
1,078,671	-				-0.7
1,078,675	-				-0.5
1,078,676	-				+0.7
1,078,805	-				-0.4
1,078,813	+				-0.9
1,078,819	+				+1.3
1,078,823	+				-0.9
1,078,829	-				+0.3
1,078,836	-				+1.4
1,078,841	-				+0.7
1,078,841	-				-0.9
1,078,841	-				-0.1
1,078,844	-				+0.1
1,078,872	+				+0.1
1,078,880	-				+0.3
1,078,911	-		CCNA_00996	0.12	+0.2
1,078,920	+		CCNA_00996	0.13	+0.3
1,078,930	-		CCNA_00996	0.14	-1.6
1,078,957	+		CCNA_00996	0.17	-0.2
1,078,965	+		CCNA_00996	0.18	+0.5
1,078,979	-		CCNA_00996	0.19	+1.5
1,079,003	-		CCNA_00996	0.22	-1.4
1,079,013	-		CCNA_00996	0.23	-1.8
1,079,032	+		CCNA_00996	0.25	-0.3
1,079,064	-		CCNA_00996	0.29	+0.1
1,079,071	-		CCNA_00996	0.30	+1.8
1,079,073	+		CCNA_00996	0.30	+2.3
1,079,073	+		CCNA_00996	0.30	-0.5
1,079,087	-		CCNA_00996	0.32	-3.4
1,079,111	+		CCNA_00996	0.34	+0.4
1,079,119	-		CCNA_00996	0.35	+0.2
1,079,143	-		CCNA_00996	0.38	+0.7
1,079,143	-		CCNA_00996	0.38	-0.1
1,079,177	+		CCNA_00996	0.42	+0.0
1,079,182	+		CCNA_00996	0.42	-1.3
1,079,182	+		CCNA_00996	0.42	+0.5
1,079,183	-		CCNA_00996	0.42	+1.0
1,079,185	-		CCNA_00996	0.43	-2.1
1,079,196	-		CCNA_00996	0.44	-0.6
1,079,226	-		CCNA_00996	0.47	-0.8
1,079,245	+		CCNA_00996	0.49	-0.1
1,079,253	-		CCNA_00996	0.50	-1.3
1,079,288	+		CCNA_00996	0.54	-2.0
1,079,299	+		CCNA_00996	0.56	+1.3
1,079,320	+		CCNA_00996	0.58	+1.3
1,079,320	+		CCNA_00996	0.58	+0.7
1,079,328	-		CCNA_00996	0.59	-0.4
1,079,331	+		CCNA_00996	0.59	-1.4
1,079,331	+		CCNA_00996	0.59	+0.3
1,079,331	+		CCNA_00996	0.59	-1.3
1,079,331	+		CCNA_00996	0.59	-0.5
1,079,331	+		CCNA_00996	0.59	-0.3
1,079,339	-		CCNA_00996	0.60	-1.3
1,079,339	-		CCNA_00996	0.60	-0.3
1,079,339	-				+3.3
1,079,339	-		CCNA_00996	0.60	+0.2
1,079,339	-		CCNA_00996	0.60	+0.5
1,079,349	+		CCNA_00996	0.61	-0.7
1,079,378	-		CCNA_00996	0.65	-0.1
1,079,382	+		CCNA_00996	0.65	+0.5
1,079,428	+		CCNA_00996	0.70	-0.8
1,079,428	+		CCNA_00996	0.70	-0.9
1,079,496	-		CCNA_00996	0.78	-0.1