Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00727

Experiment: PYE with Gentamicin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00726 and CCNA_00727 are separated by 156 nucleotidesCCNA_00727 and CCNA_00728 are separated by 72 nucleotides CCNA_00726: CCNA_00726 - acyl-CoA dehydrogenase, at 781,663 to 782,970 _00726 CCNA_00727: CCNA_00727 - ribosomal-protein-alanine acetyltransferase, at 783,127 to 783,723 _00727 CCNA_00728: CCNA_00728 - hypothetical protein, at 783,796 to 784,959 _00728 Position (kb) 783 784Strain fitness (log2 ratio) -2 -1 0 1 2 3at 782.164 kb on - strand, within CCNA_00726at 782.175 kb on - strand, within CCNA_00726at 782.175 kb on - strand, within CCNA_00726at 782.186 kb on - strand, within CCNA_00726at 782.210 kb on - strand, within CCNA_00726at 782.234 kb on + strand, within CCNA_00726at 782.254 kb on - strand, within CCNA_00726at 782.260 kb on - strand, within CCNA_00726at 782.265 kb on - strand, within CCNA_00726at 782.279 kb on - strandat 782.279 kb on - strand, within CCNA_00726at 782.349 kb on - strand, within CCNA_00726at 782.386 kb on - strand, within CCNA_00726at 782.421 kb on + strand, within CCNA_00726at 782.429 kb on - strand, within CCNA_00726at 782.429 kb on - strand, within CCNA_00726at 782.483 kb on - strand, within CCNA_00726at 782.490 kb on - strand, within CCNA_00726at 782.490 kb on - strand, within CCNA_00726at 782.507 kb on - strand, within CCNA_00726at 782.507 kb on - strand, within CCNA_00726at 782.512 kb on - strand, within CCNA_00726at 782.517 kb on - strand, within CCNA_00726at 782.525 kb on + strand, within CCNA_00726at 782.613 kb on - strand, within CCNA_00726at 782.650 kb on - strand, within CCNA_00726at 782.702 kb on - strand, within CCNA_00726at 782.723 kb on + strand, within CCNA_00726at 782.723 kb on + strand, within CCNA_00726at 782.724 kb on - strand, within CCNA_00726at 782.731 kb on - strand, within CCNA_00726at 782.746 kb on - strand, within CCNA_00726at 782.752 kb on + strand, within CCNA_00726at 782.755 kb on - strand, within CCNA_00726at 782.760 kb on - strand, within CCNA_00726at 782.760 kb on - strand, within CCNA_00726at 782.760 kb on - strand, within CCNA_00726at 782.760 kb on - strand, within CCNA_00726at 782.760 kb on - strand, within CCNA_00726at 782.760 kb on - strand, within CCNA_00726at 782.838 kb on - strand, within CCNA_00726at 782.881 kb on - strandat 782.926 kb on - strandat 782.927 kb on - strandat 782.929 kb on + strandat 782.954 kb on - strandat 782.959 kb on + strandat 782.965 kb on + strandat 782.965 kb on + strandat 782.965 kb on + strandat 782.965 kb on + strandat 782.965 kb on + strandat 782.973 kb on - strandat 782.973 kb on - strandat 782.973 kb on - strandat 782.973 kb on - strandat 783.028 kb on - strandat 783.038 kb on - strandat 783.067 kb on + strandat 783.067 kb on + strandat 783.075 kb on - strandat 783.075 kb on - strandat 783.075 kb on - strandat 783.075 kb on - strandat 783.075 kb on - strandat 783.075 kb on - strandat 783.080 kb on - strandat 783.084 kb on + strandat 783.092 kb on - strandat 783.092 kb on - strandat 783.128 kb on + strandat 783.130 kb on - strandat 783.154 kb on - strandat 783.214 kb on + strand, within CCNA_00727at 783.236 kb on + strand, within CCNA_00727at 783.272 kb on + strand, within CCNA_00727at 783.282 kb on + strand, within CCNA_00727at 783.290 kb on - strand, within CCNA_00727at 783.295 kb on + strand, within CCNA_00727at 783.300 kb on + strand, within CCNA_00727at 783.300 kb on + strand, within CCNA_00727at 783.303 kb on - strand, within CCNA_00727at 783.387 kb on - strand, within CCNA_00727at 783.387 kb on - strand, within CCNA_00727at 783.429 kb on + strand, within CCNA_00727at 783.432 kb on - strand, within CCNA_00727at 783.442 kb on - strand, within CCNA_00727at 783.446 kb on + strand, within CCNA_00727at 783.451 kb on + strand, within CCNA_00727at 783.455 kb on - strand, within CCNA_00727at 783.459 kb on - strand, within CCNA_00727at 783.462 kb on + strand, within CCNA_00727at 783.464 kb on - strand, within CCNA_00727at 783.504 kb on + strand, within CCNA_00727at 783.504 kb on + strand, within CCNA_00727at 783.504 kb on + strand, within CCNA_00727at 783.523 kb on + strand, within CCNA_00727at 783.523 kb on + strand, within CCNA_00727at 783.528 kb on + strand, within CCNA_00727at 783.528 kb on + strand, within CCNA_00727at 783.605 kb on + strand, within CCNA_00727at 783.605 kb on + strand, within CCNA_00727at 783.639 kb on - strand, within CCNA_00727at 783.656 kb on - strand, within CCNA_00727at 783.705 kb on + strandat 783.736 kb on - strandat 783.737 kb on - strandat 783.775 kb on + strandat 783.783 kb on - strandat 783.783 kb on - strandat 783.802 kb on + strandat 783.826 kb on + strandat 783.845 kb on + strandat 783.924 kb on + strand, within CCNA_00728at 783.953 kb on + strand, within CCNA_00728at 783.953 kb on + strand, within CCNA_00728at 783.984 kb on - strand, within CCNA_00728at 784.035 kb on + strand, within CCNA_00728at 784.043 kb on - strand, within CCNA_00728at 784.060 kb on - strand, within CCNA_00728at 784.062 kb on + strand, within CCNA_00728at 784.070 kb on - strand, within CCNA_00728at 784.085 kb on + strand, within CCNA_00728at 784.085 kb on + strand, within CCNA_00728at 784.096 kb on + strand, within CCNA_00728at 784.096 kb on + strand, within CCNA_00728at 784.104 kb on + strand, within CCNA_00728at 784.251 kb on + strand, within CCNA_00728at 784.251 kb on + strand, within CCNA_00728at 784.257 kb on + strand, within CCNA_00728at 784.257 kb on + strand, within CCNA_00728at 784.290 kb on - strand, within CCNA_00728at 784.302 kb on - strand, within CCNA_00728at 784.303 kb on - strand, within CCNA_00728at 784.309 kb on + strand, within CCNA_00728at 784.310 kb on + strand, within CCNA_00728at 784.325 kb on - strand, within CCNA_00728at 784.332 kb on + strand, within CCNA_00728at 784.333 kb on + strand, within CCNA_00728at 784.340 kb on - strand, within CCNA_00728at 784.345 kb on + strand, within CCNA_00728at 784.349 kb on + strand, within CCNA_00728at 784.366 kb on - strand, within CCNA_00728at 784.405 kb on + strand, within CCNA_00728at 784.413 kb on - strand, within CCNA_00728at 784.413 kb on - strand, within CCNA_00728at 784.426 kb on + strand, within CCNA_00728at 784.434 kb on - strand, within CCNA_00728at 784.465 kb on - strand, within CCNA_00728at 784.483 kb on - strand, within CCNA_00728at 784.532 kb on + strand, within CCNA_00728at 784.551 kb on + strand, within CCNA_00728at 784.559 kb on - strand, within CCNA_00728at 784.559 kb on - strand, within CCNA_00728at 784.563 kb on + strand, within CCNA_00728at 784.563 kb on + strand, within CCNA_00728at 784.563 kb on + strand, within CCNA_00728at 784.571 kb on - strand, within CCNA_00728at 784.571 kb on - strand, within CCNA_00728at 784.610 kb on + strand, within CCNA_00728at 784.616 kb on + strand, within CCNA_00728at 784.620 kb on + strand, within CCNA_00728at 784.621 kb on + strand, within CCNA_00728at 784.634 kb on - strand, within CCNA_00728at 784.649 kb on - strand, within CCNA_00728at 784.650 kb on + strand, within CCNA_00728at 784.674 kb on - strand, within CCNA_00728at 784.675 kb on + strand, within CCNA_00728at 784.684 kb on + strand, within CCNA_00728at 784.693 kb on + strand, within CCNA_00728at 784.702 kb on - strand, within CCNA_00728at 784.706 kb on - strand, within CCNA_00728at 784.720 kb on - strand, within CCNA_00728at 784.722 kb on + strand, within CCNA_00728

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Gentamicin 0.0005 mg/ml
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782,164 - CCNA_00726 0.38 +2.2
782,175 - CCNA_00726 0.39 +1.5
782,175 - CCNA_00726 0.39 +2.0
782,186 - CCNA_00726 0.40 +1.7
782,210 - CCNA_00726 0.42 +2.0
782,234 + CCNA_00726 0.44 +1.9
782,254 - CCNA_00726 0.45 +1.0
782,260 - CCNA_00726 0.46 +1.5
782,265 - CCNA_00726 0.46 +1.6
782,279 - +2.2
782,279 - CCNA_00726 0.47 +2.1
782,349 - CCNA_00726 0.52 +2.3
782,386 - CCNA_00726 0.55 +1.8
782,421 + CCNA_00726 0.58 -0.1
782,429 - CCNA_00726 0.59 +1.4
782,429 - CCNA_00726 0.59 +1.8
782,483 - CCNA_00726 0.63 +2.0
782,490 - CCNA_00726 0.63 +0.3
782,490 - CCNA_00726 0.63 +1.6
782,507 - CCNA_00726 0.65 +1.3
782,507 - CCNA_00726 0.65 +0.8
782,512 - CCNA_00726 0.65 +1.8
782,517 - CCNA_00726 0.65 +1.1
782,525 + CCNA_00726 0.66 +1.9
782,613 - CCNA_00726 0.73 +2.3
782,650 - CCNA_00726 0.75 +1.0
782,702 - CCNA_00726 0.79 -0.5
782,723 + CCNA_00726 0.81 +0.4
782,723 + CCNA_00726 0.81 -0.4
782,724 - CCNA_00726 0.81 +0.3
782,731 - CCNA_00726 0.82 +0.4
782,746 - CCNA_00726 0.83 +1.2
782,752 + CCNA_00726 0.83 +0.2
782,755 - CCNA_00726 0.83 +2.3
782,760 - CCNA_00726 0.84 +1.6
782,760 - CCNA_00726 0.84 +0.3
782,760 - CCNA_00726 0.84 +0.6
782,760 - CCNA_00726 0.84 +1.4
782,760 - CCNA_00726 0.84 +1.1
782,760 - CCNA_00726 0.84 +2.8
782,838 - CCNA_00726 0.90 +1.4
782,881 - +1.3
782,926 - +1.4
782,927 - +1.3
782,929 + -0.4
782,954 - +0.5
782,959 + +0.2
782,965 + -0.8
782,965 + +1.2
782,965 + -0.6
782,965 + +0.7
782,965 + +0.6
782,973 - +0.9
782,973 - +0.2
782,973 - +0.3
782,973 - +0.6
783,028 - +2.4
783,038 - +2.1
783,067 + -0.4
783,067 + -0.4
783,075 - -1.6
783,075 - +0.7
783,075 - -0.0
783,075 - -0.0
783,075 - -0.9
783,075 - -1.1
783,080 - +0.9
783,084 + -0.1
783,092 - +0.9
783,092 - +1.7
783,128 + +0.4
783,130 - +1.4
783,154 - -0.6
783,214 + CCNA_00727 0.15 +0.4
783,236 + CCNA_00727 0.18 -0.5
783,272 + CCNA_00727 0.24 +1.1
783,282 + CCNA_00727 0.26 +1.9
783,290 - CCNA_00727 0.27 +0.6
783,295 + CCNA_00727 0.28 +1.0
783,300 + CCNA_00727 0.29 -1.5
783,300 + CCNA_00727 0.29 +0.1
783,303 - CCNA_00727 0.29 +0.4
783,387 - CCNA_00727 0.44 +0.4
783,387 - CCNA_00727 0.44 -1.1
783,429 + CCNA_00727 0.51 +0.3
783,432 - CCNA_00727 0.51 +1.1
783,442 - CCNA_00727 0.53 -0.7
783,446 + CCNA_00727 0.53 -1.9
783,451 + CCNA_00727 0.54 +0.4
783,455 - CCNA_00727 0.55 +3.0
783,459 - CCNA_00727 0.56 +1.9
783,462 + CCNA_00727 0.56 +1.1
783,464 - CCNA_00727 0.56 -0.5
783,504 + CCNA_00727 0.63 +0.5
783,504 + CCNA_00727 0.63 +0.3
783,504 + CCNA_00727 0.63 +3.2
783,523 + CCNA_00727 0.66 -0.2
783,523 + CCNA_00727 0.66 +0.1
783,528 + CCNA_00727 0.67 +0.6
783,528 + CCNA_00727 0.67 +0.7
783,605 + CCNA_00727 0.80 +0.5
783,605 + CCNA_00727 0.80 +1.1
783,639 - CCNA_00727 0.86 -0.9
783,656 - CCNA_00727 0.89 +1.0
783,705 + +1.5
783,736 - +0.9
783,737 - +1.6
783,775 + -0.3
783,783 - -0.7
783,783 - -0.4
783,802 + -0.3
783,826 + -0.3
783,845 + -0.4
783,924 + CCNA_00728 0.11 -0.2
783,953 + CCNA_00728 0.13 -1.2
783,953 + CCNA_00728 0.13 -0.1
783,984 - CCNA_00728 0.16 -0.5
784,035 + CCNA_00728 0.21 -0.3
784,043 - CCNA_00728 0.21 -0.2
784,060 - CCNA_00728 0.23 -0.3
784,062 + CCNA_00728 0.23 +0.8
784,070 - CCNA_00728 0.24 +0.0
784,085 + CCNA_00728 0.25 +1.2
784,085 + CCNA_00728 0.25 +0.3
784,096 + CCNA_00728 0.26 +0.6
784,096 + CCNA_00728 0.26 -2.0
784,104 + CCNA_00728 0.26 +0.9
784,251 + CCNA_00728 0.39 -0.1
784,251 + CCNA_00728 0.39 +1.1
784,257 + CCNA_00728 0.40 +1.1
784,257 + CCNA_00728 0.40 +0.5
784,290 - CCNA_00728 0.42 +1.7
784,302 - CCNA_00728 0.43 +0.5
784,303 - CCNA_00728 0.44 -1.0
784,309 + CCNA_00728 0.44 -0.2
784,310 + CCNA_00728 0.44 -0.4
784,325 - CCNA_00728 0.45 -0.3
784,332 + CCNA_00728 0.46 +1.0
784,333 + CCNA_00728 0.46 -0.6
784,340 - CCNA_00728 0.47 +1.0
784,345 + CCNA_00728 0.47 +3.0
784,349 + CCNA_00728 0.48 -0.6
784,366 - CCNA_00728 0.49 -0.6
784,405 + CCNA_00728 0.52 +1.9
784,413 - CCNA_00728 0.53 +0.0
784,413 - CCNA_00728 0.53 -0.9
784,426 + CCNA_00728 0.54 +1.0
784,434 - CCNA_00728 0.55 -1.7
784,465 - CCNA_00728 0.57 +0.5
784,483 - CCNA_00728 0.59 -1.9
784,532 + CCNA_00728 0.63 +2.1
784,551 + CCNA_00728 0.65 +0.0
784,559 - CCNA_00728 0.66 +0.4
784,559 - CCNA_00728 0.66 +1.9
784,563 + CCNA_00728 0.66 -0.5
784,563 + CCNA_00728 0.66 -0.9
784,563 + CCNA_00728 0.66 +0.3
784,571 - CCNA_00728 0.67 -0.4
784,571 - CCNA_00728 0.67 +0.7
784,610 + CCNA_00728 0.70 -0.2
784,616 + CCNA_00728 0.70 +1.6
784,620 + CCNA_00728 0.71 -1.1
784,621 + CCNA_00728 0.71 -0.8
784,634 - CCNA_00728 0.72 -0.8
784,649 - CCNA_00728 0.73 +0.1
784,650 + CCNA_00728 0.73 -0.7
784,674 - CCNA_00728 0.75 +1.7
784,675 + CCNA_00728 0.76 -2.5
784,684 + CCNA_00728 0.76 +0.2
784,693 + CCNA_00728 0.77 +0.1
784,702 - CCNA_00728 0.78 +0.1
784,706 - CCNA_00728 0.78 +2.4
784,720 - CCNA_00728 0.79 -0.7
784,722 + CCNA_00728 0.80 -0.3

Or see this region's nucleotide sequence