Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00550

Experiment: PYE with Gentamicin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00548 and CCNA_00549 overlap by 7 nucleotidesCCNA_00549 and CCNA_00550 overlap by 85 nucleotidesCCNA_00550 and CCNA_00551 are separated by 207 nucleotidesCCNA_00551 and CCNA_00552 are separated by 255 nucleotides CCNA_00548: CCNA_00548 - transposase, HTH-Tnp1 superfamily, at 565,904 to 566,170 _00548 CCNA_00549: CCNA_00549 - transposase, IS2 family, at 566,164 to 567,090 _00549 CCNA_00550: CCNA_00550 - LacI-family transcriptional regulator, at 567,006 to 568,052 _00550 CCNA_00551: CCNA_00551 - hypothetical protein, at 568,260 to 568,700 _00551 CCNA_00552: CCNA_00552 - cupin superfamily protein, at 568,956 to 569,426 _00552 Position (kb) 567 568 569Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 567.093 kb on + strandat 567.093 kb on + strandat 567.130 kb on - strand, within CCNA_00550at 567.142 kb on - strand, within CCNA_00550at 567.184 kb on + strand, within CCNA_00550at 567.184 kb on + strand, within CCNA_00550at 567.189 kb on + strandat 567.192 kb on - strand, within CCNA_00550at 567.192 kb on - strand, within CCNA_00550at 567.192 kb on - strand, within CCNA_00550at 567.219 kb on - strand, within CCNA_00550at 567.219 kb on - strand, within CCNA_00550at 567.219 kb on - strand, within CCNA_00550at 567.221 kb on + strand, within CCNA_00550at 567.229 kb on - strand, within CCNA_00550at 567.229 kb on - strand, within CCNA_00550at 567.253 kb on - strand, within CCNA_00550at 567.260 kb on - strand, within CCNA_00550at 567.278 kb on - strand, within CCNA_00550at 567.364 kb on - strand, within CCNA_00550at 567.373 kb on - strand, within CCNA_00550at 567.385 kb on + strand, within CCNA_00550at 567.385 kb on + strand, within CCNA_00550at 567.398 kb on + strand, within CCNA_00550at 567.407 kb on - strand, within CCNA_00550at 567.407 kb on - strand, within CCNA_00550at 567.425 kb on + strand, within CCNA_00550at 567.435 kb on + strand, within CCNA_00550at 567.448 kb on + strand, within CCNA_00550at 567.466 kb on - strand, within CCNA_00550at 567.466 kb on - strand, within CCNA_00550at 567.471 kb on + strand, within CCNA_00550at 567.471 kb on + strand, within CCNA_00550at 567.478 kb on + strand, within CCNA_00550at 567.479 kb on - strand, within CCNA_00550at 567.486 kb on - strand, within CCNA_00550at 567.486 kb on - strand, within CCNA_00550at 567.521 kb on + strand, within CCNA_00550at 567.524 kb on - strand, within CCNA_00550at 567.524 kb on - strand, within CCNA_00550at 567.529 kb on - strand, within CCNA_00550at 567.541 kb on + strand, within CCNA_00550at 567.595 kb on - strand, within CCNA_00550at 567.596 kb on + strand, within CCNA_00550at 567.647 kb on + strand, within CCNA_00550at 567.655 kb on - strand, within CCNA_00550at 567.660 kb on + strand, within CCNA_00550at 567.660 kb on + strand, within CCNA_00550at 567.660 kb on + strand, within CCNA_00550at 567.667 kb on + strand, within CCNA_00550at 567.668 kb on - strand, within CCNA_00550at 567.675 kb on - strand, within CCNA_00550at 567.675 kb on - strand, within CCNA_00550at 567.716 kb on + strand, within CCNA_00550at 567.786 kb on + strand, within CCNA_00550at 567.786 kb on + strand, within CCNA_00550at 567.794 kb on - strand, within CCNA_00550at 567.804 kb on + strand, within CCNA_00550at 567.828 kb on + strandat 567.841 kb on - strand, within CCNA_00550at 567.842 kb on + strand, within CCNA_00550at 567.862 kb on + strand, within CCNA_00550at 567.870 kb on - strand, within CCNA_00550at 567.886 kb on + strand, within CCNA_00550at 567.894 kb on - strand, within CCNA_00550at 567.905 kb on - strand, within CCNA_00550at 567.925 kb on - strand, within CCNA_00550at 567.936 kb on + strand, within CCNA_00550at 567.944 kb on - strand, within CCNA_00550at 567.991 kb on - strandat 568.008 kb on + strandat 568.122 kb on + strandat 568.186 kb on + strandat 568.194 kb on - strandat 568.221 kb on - strandat 568.233 kb on + strandat 568.241 kb on + strandat 568.257 kb on + strandat 568.265 kb on - strandat 568.265 kb on - strandat 568.266 kb on - strandat 568.290 kb on - strandat 568.292 kb on - strandat 568.292 kb on - strandat 568.299 kb on - strandat 568.305 kb on + strand, within CCNA_00551at 568.313 kb on - strand, within CCNA_00551at 568.313 kb on - strand, within CCNA_00551at 568.326 kb on + strand, within CCNA_00551at 568.326 kb on + strand, within CCNA_00551at 568.334 kb on - strand, within CCNA_00551at 568.342 kb on + strand, within CCNA_00551at 568.351 kb on - strand, within CCNA_00551at 568.353 kb on + strand, within CCNA_00551at 568.510 kb on + strand, within CCNA_00551at 568.518 kb on - strand, within CCNA_00551at 568.567 kb on + strand, within CCNA_00551at 568.576 kb on + strand, within CCNA_00551at 568.583 kb on + strand, within CCNA_00551at 568.601 kb on + strand, within CCNA_00551at 568.601 kb on + strand, within CCNA_00551at 568.601 kb on + strand, within CCNA_00551at 568.601 kb on + strand, within CCNA_00551at 568.609 kb on - strand, within CCNA_00551at 568.609 kb on - strand, within CCNA_00551at 568.609 kb on - strand, within CCNA_00551at 568.609 kb on - strand, within CCNA_00551at 568.616 kb on - strand, within CCNA_00551at 568.636 kb on - strand, within CCNA_00551at 568.636 kb on - strand, within CCNA_00551at 568.641 kb on - strand, within CCNA_00551at 568.651 kb on - strand, within CCNA_00551at 568.651 kb on - strand, within CCNA_00551at 568.691 kb on + strandat 568.691 kb on + strandat 568.691 kb on - strandat 568.699 kb on - strandat 568.758 kb on - strandat 568.785 kb on + strandat 568.803 kb on - strandat 568.826 kb on + strandat 568.834 kb on - strandat 568.849 kb on + strandat 568.849 kb on - strandat 568.869 kb on - strandat 568.872 kb on + strandat 568.880 kb on - strandat 568.882 kb on - strandat 568.884 kb on + strandat 568.888 kb on + strandat 568.888 kb on + strandat 568.888 kb on + strandat 568.888 kb on + strandat 568.908 kb on + strandat 568.921 kb on - strandat 569.005 kb on + strand, within CCNA_00552at 569.008 kb on - strand, within CCNA_00552at 569.039 kb on - strand, within CCNA_00552at 569.050 kb on + strand, within CCNA_00552

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Gentamicin 0.0005 mg/ml
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567,093 + -1.8
567,093 + -0.0
567,130 - CCNA_00550 0.12 +0.2
567,142 - CCNA_00550 0.13 +0.7
567,184 + CCNA_00550 0.17 -1.1
567,184 + CCNA_00550 0.17 +1.5
567,189 + +4.1
567,192 - CCNA_00550 0.18 +2.9
567,192 - CCNA_00550 0.18 +2.6
567,192 - CCNA_00550 0.18 +2.8
567,219 - CCNA_00550 0.20 +1.0
567,219 - CCNA_00550 0.20 +1.1
567,219 - CCNA_00550 0.20 +0.9
567,221 + CCNA_00550 0.21 +1.8
567,229 - CCNA_00550 0.21 +0.3
567,229 - CCNA_00550 0.21 -0.5
567,253 - CCNA_00550 0.24 +0.1
567,260 - CCNA_00550 0.24 +0.7
567,278 - CCNA_00550 0.26 -1.1
567,364 - CCNA_00550 0.34 -0.8
567,373 - CCNA_00550 0.35 +1.1
567,385 + CCNA_00550 0.36 -1.4
567,385 + CCNA_00550 0.36 -0.6
567,398 + CCNA_00550 0.37 -0.3
567,407 - CCNA_00550 0.38 -1.7
567,407 - CCNA_00550 0.38 -1.5
567,425 + CCNA_00550 0.40 -0.0
567,435 + CCNA_00550 0.41 -1.0
567,448 + CCNA_00550 0.42 -0.1
567,466 - CCNA_00550 0.44 +0.5
567,466 - CCNA_00550 0.44 +0.2
567,471 + CCNA_00550 0.44 +0.9
567,471 + CCNA_00550 0.44 -0.3
567,478 + CCNA_00550 0.45 +1.4
567,479 - CCNA_00550 0.45 -0.3
567,486 - CCNA_00550 0.46 +1.9
567,486 - CCNA_00550 0.46 -0.1
567,521 + CCNA_00550 0.49 +0.6
567,524 - CCNA_00550 0.49 -0.5
567,524 - CCNA_00550 0.49 +1.4
567,529 - CCNA_00550 0.50 +2.3
567,541 + CCNA_00550 0.51 -1.6
567,595 - CCNA_00550 0.56 -0.9
567,596 + CCNA_00550 0.56 +1.2
567,647 + CCNA_00550 0.61 -0.3
567,655 - CCNA_00550 0.62 +2.5
567,660 + CCNA_00550 0.62 +0.3
567,660 + CCNA_00550 0.62 -1.4
567,660 + CCNA_00550 0.62 +0.5
567,667 + CCNA_00550 0.63 -0.1
567,668 - CCNA_00550 0.63 +0.7
567,675 - CCNA_00550 0.64 -0.3
567,675 - CCNA_00550 0.64 -0.8
567,716 + CCNA_00550 0.68 -0.2
567,786 + CCNA_00550 0.74 -1.2
567,786 + CCNA_00550 0.74 +1.3
567,794 - CCNA_00550 0.75 +0.1
567,804 + CCNA_00550 0.76 +2.2
567,828 + +2.5
567,841 - CCNA_00550 0.80 -0.3
567,842 + CCNA_00550 0.80 +1.4
567,862 + CCNA_00550 0.82 +0.9
567,870 - CCNA_00550 0.83 +1.2
567,886 + CCNA_00550 0.84 -0.0
567,894 - CCNA_00550 0.85 -0.3
567,905 - CCNA_00550 0.86 +0.8
567,925 - CCNA_00550 0.88 -0.6
567,936 + CCNA_00550 0.89 -0.3
567,944 - CCNA_00550 0.90 +0.1
567,991 - +1.3
568,008 + -1.9
568,122 + -0.8
568,186 + -2.2
568,194 - +1.8
568,221 - -1.2
568,233 + -0.1
568,241 + -0.6
568,257 + -1.6
568,265 - +0.2
568,265 - +0.2
568,266 - +0.8
568,290 - -1.7
568,292 - +1.8
568,292 - -0.8
568,299 - +0.7
568,305 + CCNA_00551 0.10 +1.1
568,313 - CCNA_00551 0.12 +1.3
568,313 - CCNA_00551 0.12 +1.1
568,326 + CCNA_00551 0.15 +0.1
568,326 + CCNA_00551 0.15 +0.4
568,334 - CCNA_00551 0.17 -0.5
568,342 + CCNA_00551 0.19 +1.4
568,351 - CCNA_00551 0.21 +0.4
568,353 + CCNA_00551 0.21 +1.9
568,510 + CCNA_00551 0.57 +0.9
568,518 - CCNA_00551 0.59 -1.5
568,567 + CCNA_00551 0.70 +0.3
568,576 + CCNA_00551 0.72 -0.6
568,583 + CCNA_00551 0.73 -0.1
568,601 + CCNA_00551 0.77 +2.5
568,601 + CCNA_00551 0.77 +0.5
568,601 + CCNA_00551 0.77 -1.3
568,601 + CCNA_00551 0.77 +0.5
568,609 - CCNA_00551 0.79 -0.8
568,609 - CCNA_00551 0.79 +0.5
568,609 - CCNA_00551 0.79 +0.1
568,609 - CCNA_00551 0.79 +0.3
568,616 - CCNA_00551 0.81 +0.9
568,636 - CCNA_00551 0.85 -0.6
568,636 - CCNA_00551 0.85 +1.3
568,641 - CCNA_00551 0.86 +0.0
568,651 - CCNA_00551 0.89 +0.5
568,651 - CCNA_00551 0.89 +0.1
568,691 + -0.3
568,691 + +0.8
568,691 - -0.2
568,699 - -0.3
568,758 - -1.2
568,785 + -1.4
568,803 - +0.5
568,826 + -0.8
568,834 - -0.2
568,849 + +0.7
568,849 - -1.4
568,869 - +1.5
568,872 + +0.5
568,880 - +0.5
568,882 - -2.0
568,884 + +0.2
568,888 + -0.6
568,888 + -0.0
568,888 + +1.0
568,888 + +0.4
568,908 + -1.3
568,921 - -0.6
569,005 + CCNA_00552 0.10 +0.1
569,008 - CCNA_00552 0.11 -0.4
569,039 - CCNA_00552 0.18 +0.4
569,050 + CCNA_00552 0.20 -0.6

Or see this region's nucleotide sequence