Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00314

Experiment: PYE with Gentamicin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00313 and CCNA_00314 are separated by 42 nucleotidesCCNA_00314 and CCNA_00315 are separated by 25 nucleotides CCNA_00313: CCNA_00313 - peptidase, M14 family, at 326,715 to 328,544 _00313 CCNA_00314: CCNA_00314 - hypothetical protein, at 328,587 to 329,198 _00314 CCNA_00315: CCNA_00315 - 3-polyprenyl-4-hydroxybenzoate decarboxylase, at 329,224 to 330,753 _00315 Position (kb) 328 329 330Strain fitness (log2 ratio) -2 -1 0 1 2 3at 327.595 kb on + strand, within CCNA_00313at 327.654 kb on + strand, within CCNA_00313at 327.683 kb on - strand, within CCNA_00313at 327.683 kb on - strand, within CCNA_00313at 327.707 kb on + strand, within CCNA_00313at 327.708 kb on + strand, within CCNA_00313at 327.708 kb on + strand, within CCNA_00313at 327.727 kb on + strand, within CCNA_00313at 327.729 kb on - strand, within CCNA_00313at 327.753 kb on - strand, within CCNA_00313at 327.789 kb on + strand, within CCNA_00313at 327.797 kb on - strand, within CCNA_00313at 327.797 kb on - strand, within CCNA_00313at 327.797 kb on - strand, within CCNA_00313at 327.797 kb on - strand, within CCNA_00313at 327.829 kb on - strand, within CCNA_00313at 327.842 kb on - strand, within CCNA_00313at 327.847 kb on - strand, within CCNA_00313at 327.863 kb on - strand, within CCNA_00313at 327.880 kb on + strand, within CCNA_00313at 327.880 kb on + strand, within CCNA_00313at 327.880 kb on + strand, within CCNA_00313at 327.880 kb on + strand, within CCNA_00313at 327.880 kb on + strand, within CCNA_00313at 327.880 kb on + strand, within CCNA_00313at 327.888 kb on - strand, within CCNA_00313at 327.888 kb on - strand, within CCNA_00313at 327.888 kb on - strand, within CCNA_00313at 327.888 kb on - strand, within CCNA_00313at 327.888 kb on - strand, within CCNA_00313at 327.888 kb on - strand, within CCNA_00313at 327.888 kb on - strand, within CCNA_00313at 327.888 kb on - strand, within CCNA_00313at 327.892 kb on + strand, within CCNA_00313at 327.957 kb on - strand, within CCNA_00313at 327.976 kb on + strand, within CCNA_00313at 327.999 kb on - strand, within CCNA_00313at 328.016 kb on + strand, within CCNA_00313at 328.021 kb on + strand, within CCNA_00313at 328.034 kb on - strand, within CCNA_00313at 328.042 kb on - strand, within CCNA_00313at 328.051 kb on - strand, within CCNA_00313at 328.060 kb on - strand, within CCNA_00313at 328.069 kb on + strand, within CCNA_00313at 328.095 kb on - strand, within CCNA_00313at 328.132 kb on - strand, within CCNA_00313at 328.165 kb on + strand, within CCNA_00313at 328.225 kb on - strand, within CCNA_00313at 328.225 kb on - strand, within CCNA_00313at 328.281 kb on + strand, within CCNA_00313at 328.289 kb on - strand, within CCNA_00313at 328.289 kb on - strand, within CCNA_00313at 328.294 kb on + strand, within CCNA_00313at 328.296 kb on - strand, within CCNA_00313at 328.302 kb on - strand, within CCNA_00313at 328.302 kb on - strand, within CCNA_00313at 328.315 kb on - strand, within CCNA_00313at 328.330 kb on + strand, within CCNA_00313at 328.363 kb on + strandat 328.363 kb on + strandat 328.371 kb on - strandat 328.409 kb on - strandat 328.414 kb on - strandat 328.465 kb on + strandat 328.473 kb on - strandat 328.479 kb on + strandat 328.479 kb on + strandat 328.479 kb on + strandat 328.479 kb on + strandat 328.483 kb on - strandat 328.487 kb on - strandat 328.487 kb on - strandat 328.487 kb on - strandat 328.546 kb on + strandat 328.568 kb on - strandat 328.570 kb on - strandat 328.601 kb on + strandat 328.609 kb on - strandat 328.618 kb on - strandat 328.623 kb on - strandat 328.688 kb on + strand, within CCNA_00314at 328.688 kb on + strand, within CCNA_00314at 328.743 kb on + strand, within CCNA_00314at 328.750 kb on - strand, within CCNA_00314at 328.753 kb on + strand, within CCNA_00314at 328.753 kb on + strand, within CCNA_00314at 328.753 kb on + strand, within CCNA_00314at 328.753 kb on + strand, within CCNA_00314at 328.758 kb on + strand, within CCNA_00314at 328.765 kb on + strand, within CCNA_00314at 328.773 kb on - strand, within CCNA_00314at 328.859 kb on + strand, within CCNA_00314at 328.926 kb on + strand, within CCNA_00314at 328.934 kb on - strand, within CCNA_00314at 328.954 kb on - strand, within CCNA_00314at 328.959 kb on - strand, within CCNA_00314at 328.961 kb on + strand, within CCNA_00314at 328.961 kb on + strand, within CCNA_00314at 328.969 kb on - strand, within CCNA_00314at 328.992 kb on + strand, within CCNA_00314at 328.992 kb on + strand, within CCNA_00314at 328.997 kb on + strand, within CCNA_00314at 328.997 kb on - strand, within CCNA_00314at 329.002 kb on + strand, within CCNA_00314at 329.003 kb on + strand, within CCNA_00314at 329.010 kb on - strand, within CCNA_00314at 329.010 kb on - strand, within CCNA_00314at 329.014 kb on + strand, within CCNA_00314at 329.019 kb on + strand, within CCNA_00314at 329.027 kb on - strand, within CCNA_00314at 329.050 kb on + strand, within CCNA_00314at 329.071 kb on + strand, within CCNA_00314at 329.074 kb on - strand, within CCNA_00314at 329.079 kb on - strand, within CCNA_00314at 329.094 kb on - strand, within CCNA_00314at 329.094 kb on - strand, within CCNA_00314at 329.096 kb on + strand, within CCNA_00314at 329.096 kb on + strand, within CCNA_00314at 329.104 kb on - strand, within CCNA_00314at 329.157 kb on - strandat 329.217 kb on + strandat 329.226 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Gentamicin 0.0005 mg/ml
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327,595 + CCNA_00313 0.48 -0.5
327,654 + CCNA_00313 0.51 -0.8
327,683 - CCNA_00313 0.53 -2.0
327,683 - CCNA_00313 0.53 -2.0
327,707 + CCNA_00313 0.54 -0.1
327,708 + CCNA_00313 0.54 +1.0
327,708 + CCNA_00313 0.54 -0.6
327,727 + CCNA_00313 0.55 -0.4
327,729 - CCNA_00313 0.55 +2.5
327,753 - CCNA_00313 0.57 +0.1
327,789 + CCNA_00313 0.59 -0.5
327,797 - CCNA_00313 0.59 -0.1
327,797 - CCNA_00313 0.59 -2.3
327,797 - CCNA_00313 0.59 +0.6
327,797 - CCNA_00313 0.59 -0.2
327,829 - CCNA_00313 0.61 -0.4
327,842 - CCNA_00313 0.62 +1.0
327,847 - CCNA_00313 0.62 -1.2
327,863 - CCNA_00313 0.63 -1.1
327,880 + CCNA_00313 0.64 -0.3
327,880 + CCNA_00313 0.64 -0.8
327,880 + CCNA_00313 0.64 -1.8
327,880 + CCNA_00313 0.64 -0.2
327,880 + CCNA_00313 0.64 +0.3
327,880 + CCNA_00313 0.64 -0.1
327,888 - CCNA_00313 0.64 -0.4
327,888 - CCNA_00313 0.64 +0.9
327,888 - CCNA_00313 0.64 -1.3
327,888 - CCNA_00313 0.64 +0.6
327,888 - CCNA_00313 0.64 -2.3
327,888 - CCNA_00313 0.64 -0.2
327,888 - CCNA_00313 0.64 +1.4
327,888 - CCNA_00313 0.64 -0.7
327,892 + CCNA_00313 0.64 -2.0
327,957 - CCNA_00313 0.68 +0.6
327,976 + CCNA_00313 0.69 -1.1
327,999 - CCNA_00313 0.70 -0.1
328,016 + CCNA_00313 0.71 +0.1
328,021 + CCNA_00313 0.71 -0.8
328,034 - CCNA_00313 0.72 -0.3
328,042 - CCNA_00313 0.73 +0.1
328,051 - CCNA_00313 0.73 -1.3
328,060 - CCNA_00313 0.73 +0.4
328,069 + CCNA_00313 0.74 -1.0
328,095 - CCNA_00313 0.75 -1.5
328,132 - CCNA_00313 0.77 -0.6
328,165 + CCNA_00313 0.79 -0.6
328,225 - CCNA_00313 0.83 +1.5
328,225 - CCNA_00313 0.83 +1.9
328,281 + CCNA_00313 0.86 +0.3
328,289 - CCNA_00313 0.86 -0.9
328,289 - CCNA_00313 0.86 -0.5
328,294 + CCNA_00313 0.86 -1.3
328,296 - CCNA_00313 0.86 +1.0
328,302 - CCNA_00313 0.87 +0.3
328,302 - CCNA_00313 0.87 -0.0
328,315 - CCNA_00313 0.87 +0.5
328,330 + CCNA_00313 0.88 -0.3
328,363 + -0.3
328,363 + -1.4
328,371 - -1.8
328,409 - +1.2
328,414 - +0.6
328,465 + -1.1
328,473 - +1.2
328,479 + +0.3
328,479 + -0.2
328,479 + +1.0
328,479 + -0.8
328,483 - -0.9
328,487 - +0.5
328,487 - +1.2
328,487 - -1.2
328,546 + +0.6
328,568 - -1.1
328,570 - +0.5
328,601 + -0.8
328,609 - +0.5
328,618 - +0.4
328,623 - +0.6
328,688 + CCNA_00314 0.17 +0.1
328,688 + CCNA_00314 0.17 -0.2
328,743 + CCNA_00314 0.25 +0.3
328,750 - CCNA_00314 0.27 +1.0
328,753 + CCNA_00314 0.27 +0.7
328,753 + CCNA_00314 0.27 +0.8
328,753 + CCNA_00314 0.27 +0.6
328,753 + CCNA_00314 0.27 -1.6
328,758 + CCNA_00314 0.28 +0.8
328,765 + CCNA_00314 0.29 -0.2
328,773 - CCNA_00314 0.30 +0.5
328,859 + CCNA_00314 0.44 -0.5
328,926 + CCNA_00314 0.55 -1.1
328,934 - CCNA_00314 0.57 -0.9
328,954 - CCNA_00314 0.60 -1.3
328,959 - CCNA_00314 0.61 -1.2
328,961 + CCNA_00314 0.61 +0.8
328,961 + CCNA_00314 0.61 -0.2
328,969 - CCNA_00314 0.62 -1.4
328,992 + CCNA_00314 0.66 +0.1
328,992 + CCNA_00314 0.66 -1.1
328,997 + CCNA_00314 0.67 +0.2
328,997 - CCNA_00314 0.67 +0.5
329,002 + CCNA_00314 0.68 -1.6
329,003 + CCNA_00314 0.68 -1.2
329,010 - CCNA_00314 0.69 -1.0
329,010 - CCNA_00314 0.69 -0.1
329,014 + CCNA_00314 0.70 -1.5
329,019 + CCNA_00314 0.71 -2.4
329,027 - CCNA_00314 0.72 -0.4
329,050 + CCNA_00314 0.76 -0.9
329,071 + CCNA_00314 0.79 -0.1
329,074 - CCNA_00314 0.80 +0.3
329,079 - CCNA_00314 0.80 -0.6
329,094 - CCNA_00314 0.83 -0.6
329,094 - CCNA_00314 0.83 +1.8
329,096 + CCNA_00314 0.83 +2.9
329,096 + CCNA_00314 0.83 +0.8
329,104 - CCNA_00314 0.84 +1.2
329,157 - +0.0
329,217 + -0.4
329,226 - +0.6

Or see this region's nucleotide sequence