Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00264

Experiment: PYE with Gentamicin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00262 and CCNA_00263 are separated by 21 nucleotidesCCNA_00263 and CCNA_00264 are separated by 146 nucleotidesCCNA_00264 and CCNA_00265 are separated by 379 nucleotides CCNA_00262: CCNA_00262 - ketopantoate reductase panE/ApbA family protein, at 274,921 to 275,793 _00262 CCNA_00263: CCNA_00263 - hypothetical protein, at 275,815 to 276,237 _00263 CCNA_00264: CCNA_00264 - C4-dicarboxylate transport protein, at 276,384 to 277,637 _00264 CCNA_00265: CCNA_00265 - AMP nucleosidase, at 278,017 to 279,471 _00265 Position (kb) 276 277 278Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 275.385 kb on - strand, within CCNA_00262at 275.403 kb on - strand, within CCNA_00262at 275.409 kb on - strand, within CCNA_00262at 275.409 kb on - strand, within CCNA_00262at 275.411 kb on - strand, within CCNA_00262at 275.434 kb on + strand, within CCNA_00262at 275.446 kb on - strand, within CCNA_00262at 275.449 kb on + strand, within CCNA_00262at 275.449 kb on + strand, within CCNA_00262at 275.449 kb on + strand, within CCNA_00262at 275.449 kb on + strand, within CCNA_00262at 275.454 kb on + strand, within CCNA_00262at 275.457 kb on - strand, within CCNA_00262at 275.457 kb on - strand, within CCNA_00262at 275.457 kb on - strand, within CCNA_00262at 275.457 kb on - strand, within CCNA_00262at 275.457 kb on - strand, within CCNA_00262at 275.459 kb on + strand, within CCNA_00262at 275.467 kb on - strand, within CCNA_00262at 275.467 kb on - strand, within CCNA_00262at 275.484 kb on + strand, within CCNA_00262at 275.484 kb on + strand, within CCNA_00262at 275.492 kb on - strand, within CCNA_00262at 275.492 kb on - strand, within CCNA_00262at 275.504 kb on + strand, within CCNA_00262at 275.504 kb on + strand, within CCNA_00262at 275.521 kb on + strand, within CCNA_00262at 275.521 kb on + strand, within CCNA_00262at 275.534 kb on - strand, within CCNA_00262at 275.550 kb on - strand, within CCNA_00262at 275.558 kb on - strand, within CCNA_00262at 275.568 kb on + strand, within CCNA_00262at 275.576 kb on - strand, within CCNA_00262at 275.615 kb on - strand, within CCNA_00262at 275.615 kb on - strand, within CCNA_00262at 275.615 kb on - strand, within CCNA_00262at 275.681 kb on - strand, within CCNA_00262at 275.686 kb on + strand, within CCNA_00262at 275.756 kb on - strandat 275.756 kb on - strandat 275.772 kb on + strandat 275.780 kb on - strandat 275.787 kb on + strandat 275.787 kb on + strandat 275.814 kb on - strandat 275.839 kb on + strandat 275.839 kb on + strandat 275.839 kb on + strandat 275.840 kb on + strandat 275.840 kb on + strandat 275.847 kb on - strandat 275.848 kb on - strandat 275.848 kb on - strandat 275.898 kb on + strand, within CCNA_00263at 275.898 kb on + strand, within CCNA_00263at 275.898 kb on + strand, within CCNA_00263at 275.901 kb on - strand, within CCNA_00263at 275.906 kb on - strand, within CCNA_00263at 275.906 kb on - strand, within CCNA_00263at 275.917 kb on - strand, within CCNA_00263at 275.966 kb on + strand, within CCNA_00263at 275.966 kb on + strand, within CCNA_00263at 275.971 kb on + strand, within CCNA_00263at 275.971 kb on + strand, within CCNA_00263at 275.971 kb on + strand, within CCNA_00263at 275.971 kb on + strand, within CCNA_00263at 275.974 kb on - strand, within CCNA_00263at 275.974 kb on - strand, within CCNA_00263at 275.979 kb on - strand, within CCNA_00263at 275.979 kb on - strand, within CCNA_00263at 275.979 kb on - strand, within CCNA_00263at 275.984 kb on - strand, within CCNA_00263at 276.000 kb on + strand, within CCNA_00263at 276.008 kb on + strand, within CCNA_00263at 276.008 kb on - strand, within CCNA_00263at 276.048 kb on + strand, within CCNA_00263at 276.048 kb on + strand, within CCNA_00263at 276.050 kb on + strand, within CCNA_00263at 276.050 kb on + strand, within CCNA_00263at 276.056 kb on - strand, within CCNA_00263at 276.058 kb on - strand, within CCNA_00263at 276.058 kb on - strand, within CCNA_00263at 276.060 kb on + strand, within CCNA_00263at 276.060 kb on + strand, within CCNA_00263at 276.062 kb on + strand, within CCNA_00263at 276.068 kb on - strand, within CCNA_00263at 276.110 kb on - strand, within CCNA_00263at 276.115 kb on - strand, within CCNA_00263at 276.151 kb on + strand, within CCNA_00263at 276.214 kb on + strandat 276.240 kb on - strandat 276.248 kb on + strandat 276.268 kb on + strandat 276.268 kb on + strandat 276.330 kb on + strandat 276.358 kb on + strandat 276.365 kb on - strandat 276.405 kb on - strandat 276.517 kb on + strand, within CCNA_00264at 276.517 kb on + strand, within CCNA_00264at 276.525 kb on - strand, within CCNA_00264at 276.540 kb on - strand, within CCNA_00264at 276.546 kb on - strand, within CCNA_00264at 276.556 kb on - strand, within CCNA_00264at 276.611 kb on - strand, within CCNA_00264at 276.619 kb on - strand, within CCNA_00264at 276.619 kb on - strand, within CCNA_00264at 276.711 kb on + strand, within CCNA_00264at 276.719 kb on - strand, within CCNA_00264at 276.724 kb on - strand, within CCNA_00264at 276.924 kb on - strand, within CCNA_00264at 276.931 kb on + strand, within CCNA_00264at 276.931 kb on + strand, within CCNA_00264at 276.939 kb on - strand, within CCNA_00264at 276.998 kb on + strand, within CCNA_00264at 277.002 kb on - strand, within CCNA_00264at 277.006 kb on - strand, within CCNA_00264at 277.015 kb on + strand, within CCNA_00264at 277.028 kb on - strand, within CCNA_00264at 277.106 kb on + strand, within CCNA_00264at 277.106 kb on + strand, within CCNA_00264at 277.114 kb on - strand, within CCNA_00264at 277.114 kb on - strand, within CCNA_00264at 277.186 kb on + strand, within CCNA_00264at 277.244 kb on + strand, within CCNA_00264at 277.305 kb on + strand, within CCNA_00264at 277.305 kb on + strand, within CCNA_00264at 277.313 kb on - strand, within CCNA_00264at 277.313 kb on - strandat 277.313 kb on - strand, within CCNA_00264at 277.313 kb on - strand, within CCNA_00264at 277.387 kb on + strand, within CCNA_00264at 277.395 kb on - strand, within CCNA_00264at 277.444 kb on - strand, within CCNA_00264at 277.491 kb on - strand, within CCNA_00264at 277.572 kb on + strandat 277.672 kb on - strandat 277.787 kb on - strandat 277.800 kb on + strandat 277.809 kb on + strandat 277.815 kb on - strandat 277.835 kb on - strandat 277.835 kb on - strandat 277.835 kb on - strandat 277.878 kb on + strandat 277.886 kb on - strandat 277.886 kb on - strandat 277.886 kb on - strandat 277.907 kb on - strandat 277.909 kb on - strandat 277.916 kb on + strandat 278.013 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Gentamicin 0.0005 mg/ml
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275,385 - CCNA_00262 0.53 -0.6
275,403 - CCNA_00262 0.55 +0.3
275,409 - CCNA_00262 0.56 +0.2
275,409 - CCNA_00262 0.56 +0.6
275,411 - CCNA_00262 0.56 +1.4
275,434 + CCNA_00262 0.59 -0.4
275,446 - CCNA_00262 0.60 -0.9
275,449 + CCNA_00262 0.60 -0.1
275,449 + CCNA_00262 0.60 +0.1
275,449 + CCNA_00262 0.60 -0.2
275,449 + CCNA_00262 0.60 +0.4
275,454 + CCNA_00262 0.61 +0.2
275,457 - CCNA_00262 0.61 +1.4
275,457 - CCNA_00262 0.61 +0.3
275,457 - CCNA_00262 0.61 -0.2
275,457 - CCNA_00262 0.61 -0.0
275,457 - CCNA_00262 0.61 +0.4
275,459 + CCNA_00262 0.62 -0.4
275,467 - CCNA_00262 0.63 +1.8
275,467 - CCNA_00262 0.63 +1.7
275,484 + CCNA_00262 0.64 -0.1
275,484 + CCNA_00262 0.64 +1.0
275,492 - CCNA_00262 0.65 +1.0
275,492 - CCNA_00262 0.65 -0.5
275,504 + CCNA_00262 0.67 +1.0
275,504 + CCNA_00262 0.67 -0.1
275,521 + CCNA_00262 0.69 +0.2
275,521 + CCNA_00262 0.69 +0.0
275,534 - CCNA_00262 0.70 +0.4
275,550 - CCNA_00262 0.72 -1.7
275,558 - CCNA_00262 0.73 -1.8
275,568 + CCNA_00262 0.74 -1.2
275,576 - CCNA_00262 0.75 -0.8
275,615 - CCNA_00262 0.79 +0.5
275,615 - CCNA_00262 0.79 -0.4
275,615 - CCNA_00262 0.79 -0.2
275,681 - CCNA_00262 0.87 -0.5
275,686 + CCNA_00262 0.88 +0.3
275,756 - +0.9
275,756 - -0.7
275,772 + -0.2
275,780 - +0.3
275,787 + +1.0
275,787 + -0.2
275,814 - +1.0
275,839 + -1.1
275,839 + -0.3
275,839 + -1.3
275,840 + +0.6
275,840 + -1.3
275,847 - +1.1
275,848 - +1.0
275,848 - +0.9
275,898 + CCNA_00263 0.20 +0.9
275,898 + CCNA_00263 0.20 -0.2
275,898 + CCNA_00263 0.20 +0.1
275,901 - CCNA_00263 0.20 -0.0
275,906 - CCNA_00263 0.22 -1.4
275,906 - CCNA_00263 0.22 +0.3
275,917 - CCNA_00263 0.24 +1.3
275,966 + CCNA_00263 0.36 -1.7
275,966 + CCNA_00263 0.36 +0.0
275,971 + CCNA_00263 0.37 -0.5
275,971 + CCNA_00263 0.37 -2.4
275,971 + CCNA_00263 0.37 -0.8
275,971 + CCNA_00263 0.37 +0.8
275,974 - CCNA_00263 0.38 -1.6
275,974 - CCNA_00263 0.38 +0.7
275,979 - CCNA_00263 0.39 +0.3
275,979 - CCNA_00263 0.39 -0.5
275,979 - CCNA_00263 0.39 +0.5
275,984 - CCNA_00263 0.40 +0.7
276,000 + CCNA_00263 0.44 +1.3
276,008 + CCNA_00263 0.46 -0.3
276,008 - CCNA_00263 0.46 +0.6
276,048 + CCNA_00263 0.55 -2.0
276,048 + CCNA_00263 0.55 +2.8
276,050 + CCNA_00263 0.56 +0.6
276,050 + CCNA_00263 0.56 +0.4
276,056 - CCNA_00263 0.57 +0.0
276,058 - CCNA_00263 0.57 +1.2
276,058 - CCNA_00263 0.57 +0.9
276,060 + CCNA_00263 0.58 -1.2
276,060 + CCNA_00263 0.58 -0.8
276,062 + CCNA_00263 0.58 -0.0
276,068 - CCNA_00263 0.60 +0.4
276,110 - CCNA_00263 0.70 +1.1
276,115 - CCNA_00263 0.71 +1.0
276,151 + CCNA_00263 0.79 -0.6
276,214 + +1.5
276,240 - -0.7
276,248 + -2.7
276,268 + -0.5
276,268 + +3.0
276,330 + +0.5
276,358 + +0.9
276,365 - +2.1
276,405 - +2.3
276,517 + CCNA_00264 0.11 +1.8
276,517 + CCNA_00264 0.11 +2.6
276,525 - CCNA_00264 0.11 +2.7
276,540 - CCNA_00264 0.12 +1.9
276,546 - CCNA_00264 0.13 +2.8
276,556 - CCNA_00264 0.14 +2.6
276,611 - CCNA_00264 0.18 +3.8
276,619 - CCNA_00264 0.19 +3.7
276,619 - CCNA_00264 0.19 +3.5
276,711 + CCNA_00264 0.26 +0.8
276,719 - CCNA_00264 0.27 +3.9
276,724 - CCNA_00264 0.27 +3.8
276,924 - CCNA_00264 0.43 +3.7
276,931 + CCNA_00264 0.44 +2.8
276,931 + CCNA_00264 0.44 +3.1
276,939 - CCNA_00264 0.44 +3.5
276,998 + CCNA_00264 0.49 +3.0
277,002 - CCNA_00264 0.49 +3.8
277,006 - CCNA_00264 0.50 +2.5
277,015 + CCNA_00264 0.50 +1.5
277,028 - CCNA_00264 0.51 +4.3
277,106 + CCNA_00264 0.58 +2.1
277,106 + CCNA_00264 0.58 +1.9
277,114 - CCNA_00264 0.58 +2.7
277,114 - CCNA_00264 0.58 +4.4
277,186 + CCNA_00264 0.64 +1.1
277,244 + CCNA_00264 0.69 +1.3
277,305 + CCNA_00264 0.73 +2.0
277,305 + CCNA_00264 0.73 +0.3
277,313 - CCNA_00264 0.74 +3.2
277,313 - +1.2
277,313 - CCNA_00264 0.74 +2.4
277,313 - CCNA_00264 0.74 +1.7
277,387 + CCNA_00264 0.80 +2.7
277,395 - CCNA_00264 0.81 +2.8
277,444 - CCNA_00264 0.85 +3.9
277,491 - CCNA_00264 0.88 -0.4
277,572 + +4.2
277,672 - +3.0
277,787 - +1.1
277,800 + +0.4
277,809 + +0.7
277,815 - -0.4
277,835 - +0.1
277,835 - -1.2
277,835 - +0.8
277,878 + -0.2
277,886 - +1.3
277,886 - +0.8
277,886 - +0.6
277,907 - +1.2
277,909 - +0.7
277,916 + -1.0
278,013 - +0.7

Or see this region's nucleotide sequence