Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00147

Experiment: PYE with Gentamicin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00145 and CCNA_00146 are separated by 24 nucleotidesCCNA_00146 and CCNA_00147 are separated by 167 nucleotidesCCNA_00147 and CCNA_00148 are separated by 75 nucleotidesCCNA_00148 and CCNA_00149 are separated by 16 nucleotidesCCNA_00149 and CCNA_00150 overlap by 4 nucleotides CCNA_00145: CCNA_00145 - xanthosine triphosphate pyrophosphatase, at 156,966 to 157,568 _00145 CCNA_00146: CCNA_00146 - glutathione S-transferase, at 157,593 to 158,186 _00146 CCNA_00147: CCNA_00147 - hypothetical protein, at 158,354 to 158,470 _00147 CCNA_00148: CCNA_00148 - hypothetical protein, at 158,546 to 159,079 _00148 CCNA_00149: CCNA_00149 - Cro/CI-family transcriptional regulator, at 159,096 to 159,323 _00149 CCNA_00150: CCNA_00150 - PDZ domain family protein, at 159,320 to 160,297 _00150 Position (kb) 158 159Strain fitness (log2 ratio) -2 -1 0 1 2 3at 157.364 kb on + strand, within CCNA_00145at 157.364 kb on + strand, within CCNA_00145at 157.373 kb on + strand, within CCNA_00145at 157.374 kb on - strand, within CCNA_00145at 157.381 kb on - strand, within CCNA_00145at 157.381 kb on - strand, within CCNA_00145at 157.381 kb on - strand, within CCNA_00145at 157.390 kb on + strand, within CCNA_00145at 157.390 kb on + strand, within CCNA_00145at 157.398 kb on - strand, within CCNA_00145at 157.398 kb on - strand, within CCNA_00145at 157.398 kb on - strand, within CCNA_00145at 157.398 kb on - strand, within CCNA_00145at 157.398 kb on - strand, within CCNA_00145at 157.398 kb on - strand, within CCNA_00145at 157.434 kb on - strand, within CCNA_00145at 157.445 kb on + strand, within CCNA_00145at 157.500 kb on + strand, within CCNA_00145at 157.516 kb on + strandat 157.517 kb on + strandat 157.538 kb on + strandat 157.550 kb on + strandat 157.550 kb on + strandat 157.681 kb on - strand, within CCNA_00146at 157.695 kb on - strand, within CCNA_00146at 157.705 kb on - strand, within CCNA_00146at 157.741 kb on - strand, within CCNA_00146at 157.748 kb on - strand, within CCNA_00146at 157.773 kb on + strand, within CCNA_00146at 157.773 kb on + strand, within CCNA_00146at 157.773 kb on + strand, within CCNA_00146at 157.775 kb on + strand, within CCNA_00146at 157.781 kb on - strand, within CCNA_00146at 157.814 kb on + strand, within CCNA_00146at 157.814 kb on + strand, within CCNA_00146at 157.860 kb on + strand, within CCNA_00146at 157.868 kb on - strand, within CCNA_00146at 157.868 kb on - strand, within CCNA_00146at 157.868 kb on - strand, within CCNA_00146at 157.868 kb on - strand, within CCNA_00146at 157.868 kb on - strand, within CCNA_00146at 157.887 kb on + strand, within CCNA_00146at 157.902 kb on + strand, within CCNA_00146at 157.948 kb on + strand, within CCNA_00146at 157.948 kb on + strand, within CCNA_00146at 157.948 kb on + strand, within CCNA_00146at 157.956 kb on - strand, within CCNA_00146at 157.956 kb on - strand, within CCNA_00146at 157.965 kb on + strand, within CCNA_00146at 157.978 kb on - strand, within CCNA_00146at 158.016 kb on - strand, within CCNA_00146at 158.071 kb on + strand, within CCNA_00146at 158.079 kb on - strand, within CCNA_00146at 158.124 kb on + strand, within CCNA_00146at 158.128 kb on + strandat 158.139 kb on + strandat 158.147 kb on - strandat 158.149 kb on - strandat 158.172 kb on - strandat 158.174 kb on + strandat 158.181 kb on + strandat 158.181 kb on + strandat 158.189 kb on - strandat 158.194 kb on - strandat 158.291 kb on + strandat 158.294 kb on - strandat 158.299 kb on - strandat 158.299 kb on - strandat 158.309 kb on - strandat 158.334 kb on + strandat 158.366 kb on + strand, within CCNA_00147at 158.434 kb on + strand, within CCNA_00147at 158.463 kb on + strandat 158.463 kb on + strandat 158.464 kb on - strandat 158.465 kb on + strandat 158.465 kb on + strandat 158.465 kb on + strandat 158.465 kb on + strandat 158.471 kb on - strandat 158.471 kb on - strandat 158.492 kb on - strandat 158.492 kb on - strandat 158.517 kb on + strandat 158.532 kb on + strandat 158.553 kb on + strandat 158.553 kb on + strandat 158.553 kb on + strandat 158.602 kb on + strand, within CCNA_00148at 158.620 kb on - strand, within CCNA_00148at 158.652 kb on - strand, within CCNA_00148at 158.668 kb on - strand, within CCNA_00148at 158.670 kb on + strand, within CCNA_00148at 158.670 kb on - strand, within CCNA_00148at 158.673 kb on - strand, within CCNA_00148at 158.707 kb on + strand, within CCNA_00148at 158.738 kb on + strand, within CCNA_00148at 158.764 kb on + strand, within CCNA_00148at 158.772 kb on - strand, within CCNA_00148at 158.774 kb on + strand, within CCNA_00148at 158.813 kb on + strand, within CCNA_00148at 158.819 kb on + strand, within CCNA_00148at 158.889 kb on - strand, within CCNA_00148at 158.901 kb on + strand, within CCNA_00148at 158.956 kb on + strand, within CCNA_00148at 158.957 kb on + strand, within CCNA_00148at 158.964 kb on - strand, within CCNA_00148at 158.982 kb on - strand, within CCNA_00148at 159.076 kb on - strandat 159.078 kb on + strandat 159.078 kb on + strandat 159.111 kb on + strandat 159.119 kb on - strand, within CCNA_00149at 159.124 kb on + strand, within CCNA_00149at 159.132 kb on - strand, within CCNA_00149at 159.166 kb on - strand, within CCNA_00149at 159.188 kb on + strand, within CCNA_00149at 159.196 kb on - strand, within CCNA_00149at 159.203 kb on - strand, within CCNA_00149at 159.227 kb on + strand, within CCNA_00149at 159.227 kb on + strand, within CCNA_00149at 159.227 kb on + strand, within CCNA_00149at 159.230 kb on - strand, within CCNA_00149at 159.266 kb on - strand, within CCNA_00149at 159.279 kb on + strand, within CCNA_00149at 159.345 kb on + strandat 159.346 kb on + strandat 159.346 kb on + strandat 159.354 kb on - strandat 159.354 kb on - strandat 159.370 kb on + strandat 159.391 kb on - strandat 159.402 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Gentamicin 0.0005 mg/ml
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157,364 + CCNA_00145 0.66 +1.8
157,364 + CCNA_00145 0.66 -0.2
157,373 + CCNA_00145 0.67 -1.4
157,374 - CCNA_00145 0.68 +1.2
157,381 - CCNA_00145 0.69 -1.7
157,381 - CCNA_00145 0.69 +0.4
157,381 - CCNA_00145 0.69 +0.4
157,390 + CCNA_00145 0.70 -1.9
157,390 + CCNA_00145 0.70 -0.9
157,398 - CCNA_00145 0.72 +1.2
157,398 - CCNA_00145 0.72 +0.1
157,398 - CCNA_00145 0.72 -1.6
157,398 - CCNA_00145 0.72 -0.7
157,398 - CCNA_00145 0.72 -0.9
157,398 - CCNA_00145 0.72 -0.0
157,434 - CCNA_00145 0.78 +1.4
157,445 + CCNA_00145 0.79 +0.4
157,500 + CCNA_00145 0.89 -1.0
157,516 + +1.3
157,517 + -0.1
157,538 + -0.8
157,550 + -1.4
157,550 + +1.4
157,681 - CCNA_00146 0.15 +0.6
157,695 - CCNA_00146 0.17 -1.2
157,705 - CCNA_00146 0.19 -1.0
157,741 - CCNA_00146 0.25 -0.8
157,748 - CCNA_00146 0.26 +0.6
157,773 + CCNA_00146 0.30 -1.0
157,773 + CCNA_00146 0.30 -1.1
157,773 + CCNA_00146 0.30 +0.0
157,775 + CCNA_00146 0.31 -0.5
157,781 - CCNA_00146 0.32 -2.3
157,814 + CCNA_00146 0.37 +0.9
157,814 + CCNA_00146 0.37 -2.3
157,860 + CCNA_00146 0.45 -0.8
157,868 - CCNA_00146 0.46 -2.0
157,868 - CCNA_00146 0.46 +0.6
157,868 - CCNA_00146 0.46 +1.0
157,868 - CCNA_00146 0.46 +0.2
157,868 - CCNA_00146 0.46 +0.0
157,887 + CCNA_00146 0.49 +0.2
157,902 + CCNA_00146 0.52 -0.4
157,948 + CCNA_00146 0.60 -0.2
157,948 + CCNA_00146 0.60 -1.2
157,948 + CCNA_00146 0.60 -1.2
157,956 - CCNA_00146 0.61 -2.0
157,956 - CCNA_00146 0.61 -0.9
157,965 + CCNA_00146 0.63 +0.4
157,978 - CCNA_00146 0.65 -1.1
158,016 - CCNA_00146 0.71 -1.1
158,071 + CCNA_00146 0.80 +0.9
158,079 - CCNA_00146 0.82 -0.6
158,124 + CCNA_00146 0.89 +2.0
158,128 + +1.4
158,139 + -0.9
158,147 - -0.8
158,149 - -2.1
158,172 - -1.4
158,174 + +1.7
158,181 + +0.6
158,181 + -0.8
158,189 - -0.6
158,194 - +1.4
158,291 + +3.4
158,294 - +0.8
158,299 - -0.2
158,299 - +1.0
158,309 - -2.0
158,334 + +0.9
158,366 + CCNA_00147 0.10 +1.6
158,434 + CCNA_00147 0.68 +1.1
158,463 + +0.9
158,463 + +0.9
158,464 - -0.6
158,465 + +0.7
158,465 + +0.7
158,465 + +1.0
158,465 + +0.9
158,471 - -0.5
158,471 - +0.7
158,492 - -1.1
158,492 - +2.2
158,517 + +0.4
158,532 + +1.2
158,553 + +1.1
158,553 + +1.0
158,553 + +0.8
158,602 + CCNA_00148 0.10 +1.8
158,620 - CCNA_00148 0.14 -2.6
158,652 - CCNA_00148 0.20 -0.6
158,668 - CCNA_00148 0.23 -0.4
158,670 + CCNA_00148 0.23 +0.9
158,670 - CCNA_00148 0.23 -0.5
158,673 - CCNA_00148 0.24 -2.1
158,707 + CCNA_00148 0.30 +0.9
158,738 + CCNA_00148 0.36 +1.0
158,764 + CCNA_00148 0.41 +0.8
158,772 - CCNA_00148 0.42 +0.8
158,774 + CCNA_00148 0.43 +0.6
158,813 + CCNA_00148 0.50 +0.3
158,819 + CCNA_00148 0.51 +1.5
158,889 - CCNA_00148 0.64 -2.2
158,901 + CCNA_00148 0.66 +0.3
158,956 + CCNA_00148 0.77 -0.1
158,957 + CCNA_00148 0.77 +1.2
158,964 - CCNA_00148 0.78 +0.3
158,982 - CCNA_00148 0.82 -0.6
159,076 - -1.1
159,078 + +2.4
159,078 + +2.3
159,111 + +3.1
159,119 - CCNA_00149 0.10 +0.2
159,124 + CCNA_00149 0.12 +1.9
159,132 - CCNA_00149 0.16 -0.0
159,166 - CCNA_00149 0.31 -2.2
159,188 + CCNA_00149 0.40 +2.6
159,196 - CCNA_00149 0.44 -0.0
159,203 - CCNA_00149 0.47 +2.3
159,227 + CCNA_00149 0.57 +2.6
159,227 + CCNA_00149 0.57 +2.1
159,227 + CCNA_00149 0.57 +2.3
159,230 - CCNA_00149 0.59 -0.7
159,266 - CCNA_00149 0.75 +0.0
159,279 + CCNA_00149 0.80 +2.7
159,345 + +0.7
159,346 + +0.1
159,346 + +1.1
159,354 - +1.6
159,354 - +1.0
159,370 + +0.8
159,391 - +0.4
159,402 + +0.7

Or see this region's nucleotide sequence