Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20275 and CA265_RS20280 are separated by 1 nucleotides CA265_RS20280 and CA265_RS20285 are separated by 64 nucleotides CA265_RS20285 and CA265_RS20290 are separated by 9 nucleotides CA265_RS20290 and CA265_RS20295 are separated by 18 nucleotides
CA265_RS20275: CA265_RS20275 - LD-carboxypeptidase, at 5,007,818 to 5,008,717
_RS20275
CA265_RS20280: CA265_RS20280 - DoxX family protein, at 5,008,719 to 5,009,126
_RS20280
CA265_RS20285: CA265_RS20285 - hypothetical protein, at 5,009,191 to 5,009,640
_RS20285
CA265_RS20290: CA265_RS20290 - hypothetical protein, at 5,009,650 to 5,011,125
_RS20290
CA265_RS20295: CA265_RS20295 - hypothetical protein, at 5,011,144 to 5,014,272
_RS20295
Position (kb) 5009
5010
5011
5012 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5008.652 kb on - strand at 5008.684 kb on - strand at 5008.713 kb on + strand at 5008.754 kb on + strand at 5008.771 kb on + strand, within CA265_RS20280 at 5008.797 kb on - strand, within CA265_RS20280 at 5009.036 kb on - strand, within CA265_RS20280 at 5009.062 kb on + strand, within CA265_RS20280 at 5009.067 kb on - strand, within CA265_RS20280 at 5009.106 kb on + strand at 5009.106 kb on + strand at 5009.107 kb on - strand at 5009.109 kb on - strand at 5009.118 kb on - strand at 5009.130 kb on - strand at 5009.202 kb on + strand at 5009.203 kb on - strand at 5009.203 kb on - strand at 5009.203 kb on - strand at 5009.205 kb on + strand at 5009.337 kb on + strand, within CA265_RS20285 at 5009.349 kb on + strand, within CA265_RS20285 at 5009.359 kb on + strand, within CA265_RS20285 at 5009.364 kb on + strand, within CA265_RS20285 at 5009.383 kb on + strand, within CA265_RS20285 at 5009.399 kb on - strand, within CA265_RS20285 at 5009.404 kb on - strand, within CA265_RS20285 at 5009.406 kb on + strand, within CA265_RS20285 at 5009.407 kb on - strand, within CA265_RS20285 at 5009.435 kb on + strand, within CA265_RS20285 at 5009.439 kb on + strand, within CA265_RS20285 at 5009.439 kb on + strand, within CA265_RS20285 at 5009.439 kb on + strand, within CA265_RS20285 at 5009.452 kb on + strand, within CA265_RS20285 at 5009.481 kb on + strand, within CA265_RS20285 at 5009.482 kb on - strand, within CA265_RS20285 at 5009.554 kb on - strand, within CA265_RS20285 at 5009.640 kb on + strand at 5009.666 kb on - strand at 5009.704 kb on - strand at 5009.709 kb on + strand at 5009.710 kb on - strand at 5009.740 kb on + strand at 5009.751 kb on + strand at 5009.987 kb on - strand, within CA265_RS20290 at 5009.998 kb on - strand, within CA265_RS20290 at 5009.999 kb on + strand, within CA265_RS20290 at 5010.006 kb on + strand, within CA265_RS20290 at 5010.006 kb on + strand, within CA265_RS20290 at 5010.007 kb on - strand, within CA265_RS20290 at 5010.062 kb on - strand, within CA265_RS20290 at 5010.114 kb on - strand, within CA265_RS20290 at 5010.116 kb on - strand, within CA265_RS20290 at 5010.139 kb on + strand, within CA265_RS20290 at 5010.142 kb on - strand, within CA265_RS20290 at 5010.143 kb on + strand, within CA265_RS20290 at 5010.143 kb on + strand, within CA265_RS20290 at 5010.143 kb on + strand, within CA265_RS20290 at 5010.144 kb on - strand, within CA265_RS20290 at 5010.147 kb on + strand, within CA265_RS20290 at 5010.147 kb on + strand, within CA265_RS20290 at 5010.148 kb on - strand, within CA265_RS20290 at 5010.148 kb on - strand, within CA265_RS20290 at 5010.148 kb on - strand, within CA265_RS20290 at 5010.173 kb on - strand, within CA265_RS20290 at 5010.210 kb on - strand, within CA265_RS20290 at 5010.249 kb on + strand, within CA265_RS20290 at 5010.249 kb on + strand, within CA265_RS20290 at 5010.399 kb on + strand, within CA265_RS20290 at 5010.400 kb on - strand, within CA265_RS20290 at 5010.400 kb on - strand, within CA265_RS20290 at 5010.402 kb on + strand, within CA265_RS20290 at 5010.403 kb on - strand, within CA265_RS20290 at 5010.415 kb on - strand, within CA265_RS20290 at 5010.415 kb on - strand, within CA265_RS20290 at 5010.419 kb on - strand, within CA265_RS20290 at 5010.419 kb on - strand, within CA265_RS20290 at 5010.421 kb on + strand, within CA265_RS20290 at 5010.421 kb on + strand, within CA265_RS20290 at 5010.474 kb on - strand, within CA265_RS20290 at 5010.482 kb on + strand, within CA265_RS20290 at 5010.482 kb on + strand, within CA265_RS20290 at 5010.482 kb on + strand, within CA265_RS20290 at 5010.483 kb on - strand, within CA265_RS20290 at 5010.483 kb on - strand, within CA265_RS20290 at 5010.544 kb on + strand, within CA265_RS20290 at 5010.594 kb on + strand, within CA265_RS20290 at 5010.626 kb on + strand, within CA265_RS20290 at 5010.626 kb on + strand, within CA265_RS20290 at 5010.627 kb on - strand, within CA265_RS20290 at 5010.627 kb on - strand, within CA265_RS20290 at 5010.627 kb on - strand, within CA265_RS20290 at 5010.628 kb on + strand, within CA265_RS20290 at 5010.658 kb on + strand, within CA265_RS20290 at 5010.712 kb on + strand, within CA265_RS20290 at 5010.712 kb on + strand, within CA265_RS20290 at 5010.731 kb on + strand, within CA265_RS20290 at 5010.740 kb on - strand, within CA265_RS20290 at 5010.740 kb on - strand, within CA265_RS20290 at 5010.761 kb on + strand, within CA265_RS20290 at 5010.761 kb on + strand, within CA265_RS20290 at 5010.762 kb on - strand, within CA265_RS20290 at 5010.762 kb on - strand, within CA265_RS20290 at 5010.816 kb on + strand, within CA265_RS20290 at 5010.817 kb on - strand, within CA265_RS20290 at 5010.840 kb on + strand, within CA265_RS20290 at 5010.841 kb on - strand, within CA265_RS20290 at 5010.841 kb on - strand, within CA265_RS20290 at 5010.841 kb on - strand, within CA265_RS20290 at 5010.843 kb on + strand, within CA265_RS20290 at 5010.886 kb on - strand, within CA265_RS20290 at 5010.925 kb on + strand, within CA265_RS20290 at 5010.939 kb on + strand, within CA265_RS20290 at 5010.939 kb on + strand, within CA265_RS20290 at 5010.940 kb on - strand, within CA265_RS20290 at 5011.076 kb on - strand at 5011.139 kb on + strand at 5011.145 kb on + strand at 5011.159 kb on + strand at 5011.172 kb on + strand at 5011.172 kb on + strand at 5011.172 kb on + strand at 5011.250 kb on - strand at 5011.250 kb on - strand at 5011.272 kb on - strand at 5011.272 kb on - strand at 5011.272 kb on - strand at 5011.305 kb on + strand at 5011.318 kb on - strand at 5011.406 kb on + strand at 5011.406 kb on + strand at 5011.407 kb on - strand at 5011.442 kb on + strand at 5011.442 kb on + strand at 5011.443 kb on - strand at 5011.487 kb on + strand, within CA265_RS20295 at 5011.487 kb on + strand, within CA265_RS20295 at 5011.507 kb on + strand, within CA265_RS20295 at 5011.508 kb on - strand, within CA265_RS20295 at 5011.508 kb on - strand, within CA265_RS20295 at 5011.575 kb on - strand, within CA265_RS20295 at 5011.606 kb on + strand, within CA265_RS20295 at 5011.607 kb on - strand, within CA265_RS20295 at 5011.626 kb on + strand, within CA265_RS20295 at 5011.678 kb on + strand, within CA265_RS20295 at 5011.688 kb on - strand, within CA265_RS20295 at 5011.698 kb on + strand, within CA265_RS20295 at 5011.766 kb on - strand, within CA265_RS20295 at 5011.787 kb on + strand, within CA265_RS20295 at 5011.800 kb on + strand, within CA265_RS20295 at 5011.867 kb on + strand, within CA265_RS20295 at 5011.930 kb on + strand, within CA265_RS20295 at 5011.951 kb on + strand, within CA265_RS20295 at 5011.951 kb on + strand, within CA265_RS20295 at 5011.952 kb on - strand, within CA265_RS20295 at 5011.973 kb on - strand, within CA265_RS20295 at 5011.987 kb on + strand, within CA265_RS20295 at 5012.036 kb on - strand, within CA265_RS20295 at 5012.037 kb on + strand, within CA265_RS20295 at 5012.040 kb on + strand, within CA265_RS20295 at 5012.060 kb on + strand, within CA265_RS20295 at 5012.061 kb on - strand, within CA265_RS20295 at 5012.063 kb on + strand, within CA265_RS20295 at 5012.081 kb on - strand, within CA265_RS20295 at 5012.085 kb on + strand, within CA265_RS20295
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 5,008,652 - -0.7 5,008,684 - -0.4 5,008,713 + +1.8 5,008,754 + +0.2 5,008,771 + CA265_RS20280 0.13 -0.4 5,008,797 - CA265_RS20280 0.19 -0.1 5,009,036 - CA265_RS20280 0.78 +0.4 5,009,062 + CA265_RS20280 0.84 +0.4 5,009,067 - CA265_RS20280 0.85 -0.2 5,009,106 + -0.0 5,009,106 + +0.4 5,009,107 - +0.3 5,009,109 - +1.3 5,009,118 - +0.1 5,009,130 - +0.2 5,009,202 + -1.8 5,009,203 - +0.0 5,009,203 - +2.5 5,009,203 - -0.1 5,009,205 + +0.0 5,009,337 + CA265_RS20285 0.32 -0.2 5,009,349 + CA265_RS20285 0.35 -2.2 5,009,359 + CA265_RS20285 0.37 +1.4 5,009,364 + CA265_RS20285 0.38 -2.0 5,009,383 + CA265_RS20285 0.43 +1.1 5,009,399 - CA265_RS20285 0.46 +0.0 5,009,404 - CA265_RS20285 0.47 -1.6 5,009,406 + CA265_RS20285 0.48 +0.7 5,009,407 - CA265_RS20285 0.48 +1.0 5,009,435 + CA265_RS20285 0.54 +0.8 5,009,439 + CA265_RS20285 0.55 -1.6 5,009,439 + CA265_RS20285 0.55 +0.1 5,009,439 + CA265_RS20285 0.55 +0.5 5,009,452 + CA265_RS20285 0.58 -0.7 5,009,481 + CA265_RS20285 0.64 +0.7 5,009,482 - CA265_RS20285 0.65 -0.7 5,009,554 - CA265_RS20285 0.81 -0.9 5,009,640 + -0.0 5,009,666 - -0.9 5,009,704 - -0.2 5,009,709 + +0.1 5,009,710 - -0.2 5,009,740 + -0.6 5,009,751 + -0.8 5,009,987 - CA265_RS20290 0.23 -0.7 5,009,998 - CA265_RS20290 0.24 +0.6 5,009,999 + CA265_RS20290 0.24 -0.3 5,010,006 + CA265_RS20290 0.24 +0.1 5,010,006 + CA265_RS20290 0.24 -0.5 5,010,007 - CA265_RS20290 0.24 +0.9 5,010,062 - CA265_RS20290 0.28 -0.6 5,010,114 - CA265_RS20290 0.31 +0.9 5,010,116 - CA265_RS20290 0.32 -0.9 5,010,139 + CA265_RS20290 0.33 -0.3 5,010,142 - CA265_RS20290 0.33 -0.8 5,010,143 + CA265_RS20290 0.33 -0.0 5,010,143 + CA265_RS20290 0.33 +0.4 5,010,143 + CA265_RS20290 0.33 -1.1 5,010,144 - CA265_RS20290 0.33 -0.9 5,010,147 + CA265_RS20290 0.34 +0.6 5,010,147 + CA265_RS20290 0.34 -0.3 5,010,148 - CA265_RS20290 0.34 +0.3 5,010,148 - CA265_RS20290 0.34 +1.0 5,010,148 - CA265_RS20290 0.34 +0.1 5,010,173 - CA265_RS20290 0.35 -1.7 5,010,210 - CA265_RS20290 0.38 +1.0 5,010,249 + CA265_RS20290 0.41 -2.9 5,010,249 + CA265_RS20290 0.41 -0.2 5,010,399 + CA265_RS20290 0.51 -0.4 5,010,400 - CA265_RS20290 0.51 -0.1 5,010,400 - CA265_RS20290 0.51 +0.5 5,010,402 + CA265_RS20290 0.51 -0.6 5,010,403 - CA265_RS20290 0.51 -0.5 5,010,415 - CA265_RS20290 0.52 +0.3 5,010,415 - CA265_RS20290 0.52 -0.5 5,010,419 - CA265_RS20290 0.52 -1.2 5,010,419 - CA265_RS20290 0.52 -0.2 5,010,421 + CA265_RS20290 0.52 -0.4 5,010,421 + CA265_RS20290 0.52 -1.7 5,010,474 - CA265_RS20290 0.56 -0.4 5,010,482 + CA265_RS20290 0.56 -0.5 5,010,482 + CA265_RS20290 0.56 -2.1 5,010,482 + CA265_RS20290 0.56 +0.2 5,010,483 - CA265_RS20290 0.56 +1.6 5,010,483 - CA265_RS20290 0.56 -0.2 5,010,544 + CA265_RS20290 0.61 -0.1 5,010,594 + CA265_RS20290 0.64 +0.8 5,010,626 + CA265_RS20290 0.66 +0.4 5,010,626 + CA265_RS20290 0.66 +0.1 5,010,627 - CA265_RS20290 0.66 -1.2 5,010,627 - CA265_RS20290 0.66 -1.9 5,010,627 - CA265_RS20290 0.66 -0.3 5,010,628 + CA265_RS20290 0.66 -0.6 5,010,658 + CA265_RS20290 0.68 -1.5 5,010,712 + CA265_RS20290 0.72 -0.1 5,010,712 + CA265_RS20290 0.72 -1.4 5,010,731 + CA265_RS20290 0.73 -0.6 5,010,740 - CA265_RS20290 0.74 +0.5 5,010,740 - CA265_RS20290 0.74 -0.1 5,010,761 + CA265_RS20290 0.75 -0.7 5,010,761 + CA265_RS20290 0.75 -0.2 5,010,762 - CA265_RS20290 0.75 -0.9 5,010,762 - CA265_RS20290 0.75 -1.5 5,010,816 + CA265_RS20290 0.79 -1.1 5,010,817 - CA265_RS20290 0.79 -1.1 5,010,840 + CA265_RS20290 0.81 +0.5 5,010,841 - CA265_RS20290 0.81 -0.5 5,010,841 - CA265_RS20290 0.81 +0.2 5,010,841 - CA265_RS20290 0.81 +0.3 5,010,843 + CA265_RS20290 0.81 -0.4 5,010,886 - CA265_RS20290 0.84 -0.6 5,010,925 + CA265_RS20290 0.86 -0.1 5,010,939 + CA265_RS20290 0.87 -0.1 5,010,939 + CA265_RS20290 0.87 -0.7 5,010,940 - CA265_RS20290 0.87 +0.2 5,011,076 - -0.5 5,011,139 + -2.2 5,011,145 + +0.2 5,011,159 + -1.1 5,011,172 + +0.7 5,011,172 + +0.5 5,011,172 + -0.3 5,011,250 - +0.6 5,011,250 - -0.2 5,011,272 - -1.2 5,011,272 - +0.2 5,011,272 - +0.5 5,011,305 + -0.8 5,011,318 - -0.2 5,011,406 + +0.8 5,011,406 + +0.3 5,011,407 - -0.3 5,011,442 + +0.2 5,011,442 + -1.0 5,011,443 - -1.0 5,011,487 + CA265_RS20295 0.11 -0.9 5,011,487 + CA265_RS20295 0.11 -2.3 5,011,507 + CA265_RS20295 0.12 +0.3 5,011,508 - CA265_RS20295 0.12 +0.2 5,011,508 - CA265_RS20295 0.12 -0.1 5,011,575 - CA265_RS20295 0.14 -0.3 5,011,606 + CA265_RS20295 0.15 -0.1 5,011,607 - CA265_RS20295 0.15 +1.7 5,011,626 + CA265_RS20295 0.15 -0.3 5,011,678 + CA265_RS20295 0.17 -1.0 5,011,688 - CA265_RS20295 0.17 -0.7 5,011,698 + CA265_RS20295 0.18 +1.1 5,011,766 - CA265_RS20295 0.20 +0.7 5,011,787 + CA265_RS20295 0.21 -1.1 5,011,800 + CA265_RS20295 0.21 -1.5 5,011,867 + CA265_RS20295 0.23 +1.0 5,011,930 + CA265_RS20295 0.25 -1.2 5,011,951 + CA265_RS20295 0.26 +0.3 5,011,951 + CA265_RS20295 0.26 -0.3 5,011,952 - CA265_RS20295 0.26 -1.7 5,011,973 - CA265_RS20295 0.26 -0.7 5,011,987 + CA265_RS20295 0.27 +0.0 5,012,036 - CA265_RS20295 0.29 +0.1 5,012,037 + CA265_RS20295 0.29 -0.4 5,012,040 + CA265_RS20295 0.29 +0.7 5,012,060 + CA265_RS20295 0.29 +0.1 5,012,061 - CA265_RS20295 0.29 +1.2 5,012,063 + CA265_RS20295 0.29 +0.1 5,012,081 - CA265_RS20295 0.30 +0.1 5,012,085 + CA265_RS20295 0.30 -1.1
Or see this region's nucleotide sequence