Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS04005 and CA265_RS04010 are separated by 4 nucleotides CA265_RS04010 and CA265_RS04015 are separated by 11 nucleotides CA265_RS04015 and CA265_RS04020 overlap by 1 nucleotides
CA265_RS04005: CA265_RS04005 - hypothetical protein, at 957,220 to 958,779
_RS04005
CA265_RS04010: CA265_RS04010 - hypothetical protein, at 958,784 to 959,728
_RS04010
CA265_RS04015: CA265_RS04015 - ABC transporter ATP-binding protein, at 959,740 to 961,941
_RS04015
CA265_RS04020: CA265_RS04020 - hypothetical protein, at 961,941 to 963,233
_RS04020
Position (kb) 959
960
961
962 Strain fitness (log2 ratio) -2
-1
0
1
2 at 958.749 kb on + strand at 958.781 kb on + strand at 958.789 kb on + strand at 958.807 kb on + strand at 958.833 kb on + strand at 958.833 kb on + strand at 958.833 kb on + strand at 958.834 kb on - strand at 958.932 kb on + strand, within CA265_RS04010 at 958.940 kb on + strand, within CA265_RS04010 at 958.941 kb on - strand, within CA265_RS04010 at 958.942 kb on + strand, within CA265_RS04010 at 958.942 kb on + strand, within CA265_RS04010 at 958.982 kb on - strand, within CA265_RS04010 at 959.015 kb on - strand, within CA265_RS04010 at 959.047 kb on + strand, within CA265_RS04010 at 959.068 kb on - strand, within CA265_RS04010 at 959.090 kb on + strand, within CA265_RS04010 at 959.154 kb on + strand, within CA265_RS04010 at 959.165 kb on + strand, within CA265_RS04010 at 959.180 kb on - strand, within CA265_RS04010 at 959.242 kb on - strand, within CA265_RS04010 at 959.274 kb on + strand, within CA265_RS04010 at 959.291 kb on - strand, within CA265_RS04010 at 959.308 kb on - strand, within CA265_RS04010 at 959.322 kb on + strand, within CA265_RS04010 at 959.396 kb on + strand, within CA265_RS04010 at 959.449 kb on + strand, within CA265_RS04010 at 959.479 kb on - strand, within CA265_RS04010 at 959.489 kb on + strand, within CA265_RS04010 at 959.509 kb on + strand, within CA265_RS04010 at 959.570 kb on + strand, within CA265_RS04010 at 959.571 kb on - strand, within CA265_RS04010 at 959.647 kb on - strand at 959.671 kb on - strand at 959.693 kb on + strand at 959.694 kb on - strand at 959.696 kb on - strand at 959.722 kb on + strand at 959.737 kb on + strand at 959.865 kb on - strand at 959.879 kb on + strand at 959.923 kb on - strand at 960.012 kb on - strand, within CA265_RS04015 at 960.052 kb on + strand, within CA265_RS04015 at 960.052 kb on + strand, within CA265_RS04015 at 960.052 kb on + strand, within CA265_RS04015 at 960.053 kb on - strand, within CA265_RS04015 at 960.053 kb on - strand, within CA265_RS04015 at 960.053 kb on - strand, within CA265_RS04015 at 960.084 kb on + strand, within CA265_RS04015 at 960.084 kb on + strand, within CA265_RS04015 at 960.085 kb on - strand, within CA265_RS04015 at 960.117 kb on + strand, within CA265_RS04015 at 960.126 kb on + strand, within CA265_RS04015 at 960.143 kb on + strand, within CA265_RS04015 at 960.144 kb on - strand, within CA265_RS04015 at 960.164 kb on + strand, within CA265_RS04015 at 960.164 kb on + strand, within CA265_RS04015 at 960.164 kb on + strand, within CA265_RS04015 at 960.238 kb on + strand, within CA265_RS04015 at 960.246 kb on + strand, within CA265_RS04015 at 960.247 kb on - strand, within CA265_RS04015 at 960.284 kb on + strand, within CA265_RS04015 at 960.376 kb on + strand, within CA265_RS04015 at 960.377 kb on - strand, within CA265_RS04015 at 960.381 kb on - strand, within CA265_RS04015 at 960.475 kb on - strand, within CA265_RS04015 at 960.475 kb on - strand, within CA265_RS04015 at 960.633 kb on + strand, within CA265_RS04015 at 960.660 kb on - strand, within CA265_RS04015 at 960.702 kb on + strand, within CA265_RS04015 at 960.706 kb on - strand, within CA265_RS04015 at 960.706 kb on - strand, within CA265_RS04015 at 960.710 kb on + strand, within CA265_RS04015 at 960.710 kb on + strand, within CA265_RS04015 at 960.710 kb on + strand, within CA265_RS04015 at 960.711 kb on - strand, within CA265_RS04015 at 960.712 kb on + strand, within CA265_RS04015 at 960.714 kb on + strand, within CA265_RS04015 at 960.755 kb on + strand, within CA265_RS04015 at 960.755 kb on + strand, within CA265_RS04015 at 960.837 kb on - strand, within CA265_RS04015 at 960.969 kb on + strand, within CA265_RS04015 at 960.971 kb on + strand, within CA265_RS04015 at 960.971 kb on + strand, within CA265_RS04015 at 960.993 kb on + strand, within CA265_RS04015 at 961.004 kb on + strand, within CA265_RS04015 at 961.005 kb on - strand, within CA265_RS04015 at 961.045 kb on + strand, within CA265_RS04015 at 961.046 kb on - strand, within CA265_RS04015 at 961.046 kb on - strand, within CA265_RS04015 at 961.061 kb on + strand, within CA265_RS04015 at 961.061 kb on + strand, within CA265_RS04015 at 961.061 kb on + strand, within CA265_RS04015 at 961.082 kb on + strand, within CA265_RS04015 at 961.082 kb on + strand, within CA265_RS04015 at 961.095 kb on - strand, within CA265_RS04015 at 961.125 kb on - strand, within CA265_RS04015 at 961.212 kb on + strand, within CA265_RS04015 at 961.263 kb on - strand, within CA265_RS04015 at 961.283 kb on + strand, within CA265_RS04015 at 961.333 kb on - strand, within CA265_RS04015 at 961.333 kb on - strand, within CA265_RS04015 at 961.352 kb on + strand, within CA265_RS04015 at 961.353 kb on - strand, within CA265_RS04015 at 961.353 kb on - strand, within CA265_RS04015 at 961.389 kb on + strand, within CA265_RS04015 at 961.423 kb on + strand, within CA265_RS04015 at 961.498 kb on - strand, within CA265_RS04015 at 961.553 kb on + strand, within CA265_RS04015 at 961.578 kb on + strand, within CA265_RS04015 at 961.584 kb on - strand, within CA265_RS04015 at 961.672 kb on + strand, within CA265_RS04015 at 961.719 kb on - strand, within CA265_RS04015 at 961.740 kb on - strand at 961.785 kb on - strand at 961.807 kb on - strand at 961.807 kb on - strand at 961.829 kb on + strand at 961.830 kb on - strand at 961.836 kb on - strand at 961.856 kb on + strand at 961.867 kb on - strand at 961.974 kb on + strand at 961.981 kb on + strand at 962.003 kb on + strand at 962.053 kb on + strand at 962.140 kb on + strand, within CA265_RS04020 at 962.141 kb on - strand, within CA265_RS04020 at 962.160 kb on + strand, within CA265_RS04020 at 962.161 kb on - strand, within CA265_RS04020 at 962.162 kb on + strand, within CA265_RS04020 at 962.212 kb on - strand, within CA265_RS04020 at 962.380 kb on - strand, within CA265_RS04020 at 962.405 kb on - strand, within CA265_RS04020 at 962.409 kb on + strand, within CA265_RS04020 at 962.411 kb on + strand, within CA265_RS04020 at 962.411 kb on + strand, within CA265_RS04020 at 962.411 kb on + strand, within CA265_RS04020 at 962.412 kb on - strand, within CA265_RS04020 at 962.413 kb on + strand, within CA265_RS04020 at 962.413 kb on + strand, within CA265_RS04020 at 962.437 kb on - strand, within CA265_RS04020 at 962.459 kb on - strand, within CA265_RS04020 at 962.473 kb on + strand, within CA265_RS04020 at 962.605 kb on - strand, within CA265_RS04020 at 962.607 kb on - strand, within CA265_RS04020 at 962.625 kb on + strand, within CA265_RS04020 at 962.626 kb on - strand, within CA265_RS04020 at 962.637 kb on - strand, within CA265_RS04020 at 962.671 kb on + strand, within CA265_RS04020 at 962.726 kb on + strand, within CA265_RS04020 at 962.727 kb on - strand, within CA265_RS04020 at 962.772 kb on - strand, within CA265_RS04020 at 962.772 kb on - strand, within CA265_RS04020 at 962.774 kb on - strand, within CA265_RS04020 at 962.838 kb on - strand, within CA265_RS04020 at 962.873 kb on - strand, within CA265_RS04020 at 962.935 kb on - strand, within CA265_RS04020
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 958,749 + +0.4 958,781 + +0.2 958,789 + -0.8 958,807 + +1.4 958,833 + +0.7 958,833 + +0.8 958,833 + +0.7 958,834 - +0.4 958,932 + CA265_RS04010 0.16 +1.2 958,940 + CA265_RS04010 0.17 +0.5 958,941 - CA265_RS04010 0.17 +0.1 958,942 + CA265_RS04010 0.17 +0.3 958,942 + CA265_RS04010 0.17 -0.1 958,982 - CA265_RS04010 0.21 -1.8 959,015 - CA265_RS04010 0.24 -0.4 959,047 + CA265_RS04010 0.28 -0.7 959,068 - CA265_RS04010 0.30 +0.7 959,090 + CA265_RS04010 0.32 +0.6 959,154 + CA265_RS04010 0.39 +0.7 959,165 + CA265_RS04010 0.40 +0.7 959,180 - CA265_RS04010 0.42 -1.0 959,242 - CA265_RS04010 0.48 +0.3 959,274 + CA265_RS04010 0.52 +1.3 959,291 - CA265_RS04010 0.54 -1.4 959,308 - CA265_RS04010 0.55 +1.0 959,322 + CA265_RS04010 0.57 +0.6 959,396 + CA265_RS04010 0.65 +1.0 959,449 + CA265_RS04010 0.70 -0.6 959,479 - CA265_RS04010 0.74 -2.0 959,489 + CA265_RS04010 0.75 +1.0 959,509 + CA265_RS04010 0.77 -0.2 959,570 + CA265_RS04010 0.83 +0.3 959,571 - CA265_RS04010 0.83 -1.4 959,647 - +0.5 959,671 - -0.0 959,693 + +0.8 959,694 - -0.0 959,696 - -2.3 959,722 + +0.4 959,737 + +0.7 959,865 - +0.8 959,879 + -0.7 959,923 - +1.3 960,012 - CA265_RS04015 0.12 +0.3 960,052 + CA265_RS04015 0.14 +0.7 960,052 + CA265_RS04015 0.14 +0.2 960,052 + CA265_RS04015 0.14 +0.0 960,053 - CA265_RS04015 0.14 +0.2 960,053 - CA265_RS04015 0.14 -0.2 960,053 - CA265_RS04015 0.14 -1.0 960,084 + CA265_RS04015 0.16 +0.4 960,084 + CA265_RS04015 0.16 +0.8 960,085 - CA265_RS04015 0.16 +0.5 960,117 + CA265_RS04015 0.17 -0.7 960,126 + CA265_RS04015 0.18 -0.5 960,143 + CA265_RS04015 0.18 +0.5 960,144 - CA265_RS04015 0.18 +1.5 960,164 + CA265_RS04015 0.19 +0.8 960,164 + CA265_RS04015 0.19 +1.1 960,164 + CA265_RS04015 0.19 +0.3 960,238 + CA265_RS04015 0.23 +0.0 960,246 + CA265_RS04015 0.23 -1.8 960,247 - CA265_RS04015 0.23 +0.2 960,284 + CA265_RS04015 0.25 +0.9 960,376 + CA265_RS04015 0.29 -1.1 960,377 - CA265_RS04015 0.29 +0.5 960,381 - CA265_RS04015 0.29 +0.1 960,475 - CA265_RS04015 0.33 +1.1 960,475 - CA265_RS04015 0.33 +0.3 960,633 + CA265_RS04015 0.41 -0.0 960,660 - CA265_RS04015 0.42 -0.4 960,702 + CA265_RS04015 0.44 +1.0 960,706 - CA265_RS04015 0.44 -0.0 960,706 - CA265_RS04015 0.44 -0.6 960,710 + CA265_RS04015 0.44 -0.8 960,710 + CA265_RS04015 0.44 +1.5 960,710 + CA265_RS04015 0.44 +0.4 960,711 - CA265_RS04015 0.44 -2.2 960,712 + CA265_RS04015 0.44 +0.9 960,714 + CA265_RS04015 0.44 +1.2 960,755 + CA265_RS04015 0.46 +0.4 960,755 + CA265_RS04015 0.46 +0.7 960,837 - CA265_RS04015 0.50 +0.8 960,969 + CA265_RS04015 0.56 -0.9 960,971 + CA265_RS04015 0.56 +0.1 960,971 + CA265_RS04015 0.56 +1.4 960,993 + CA265_RS04015 0.57 +0.4 961,004 + CA265_RS04015 0.57 +0.1 961,005 - CA265_RS04015 0.57 +1.1 961,045 + CA265_RS04015 0.59 +1.0 961,046 - CA265_RS04015 0.59 +0.6 961,046 - CA265_RS04015 0.59 -0.5 961,061 + CA265_RS04015 0.60 -0.2 961,061 + CA265_RS04015 0.60 +1.8 961,061 + CA265_RS04015 0.60 -1.2 961,082 + CA265_RS04015 0.61 +2.0 961,082 + CA265_RS04015 0.61 +1.1 961,095 - CA265_RS04015 0.62 +0.8 961,125 - CA265_RS04015 0.63 +0.0 961,212 + CA265_RS04015 0.67 +0.4 961,263 - CA265_RS04015 0.69 +0.3 961,283 + CA265_RS04015 0.70 -0.0 961,333 - CA265_RS04015 0.72 +0.3 961,333 - CA265_RS04015 0.72 +0.3 961,352 + CA265_RS04015 0.73 +0.9 961,353 - CA265_RS04015 0.73 -0.3 961,353 - CA265_RS04015 0.73 +0.8 961,389 + CA265_RS04015 0.75 -0.0 961,423 + CA265_RS04015 0.76 +2.1 961,498 - CA265_RS04015 0.80 +0.4 961,553 + CA265_RS04015 0.82 +0.6 961,578 + CA265_RS04015 0.83 -2.0 961,584 - CA265_RS04015 0.84 +0.6 961,672 + CA265_RS04015 0.88 +0.3 961,719 - CA265_RS04015 0.90 -0.1 961,740 - +0.6 961,785 - +1.0 961,807 - -1.5 961,807 - -0.8 961,829 + -2.5 961,830 - -1.1 961,836 - -1.3 961,856 + -0.3 961,867 - +0.4 961,974 + +1.4 961,981 + +0.9 962,003 + +0.1 962,053 + -1.2 962,140 + CA265_RS04020 0.15 +0.2 962,141 - CA265_RS04020 0.15 +2.4 962,160 + CA265_RS04020 0.17 +0.0 962,161 - CA265_RS04020 0.17 +0.7 962,162 + CA265_RS04020 0.17 +0.9 962,212 - CA265_RS04020 0.21 +1.1 962,380 - CA265_RS04020 0.34 -0.2 962,405 - CA265_RS04020 0.36 -0.9 962,409 + CA265_RS04020 0.36 +0.7 962,411 + CA265_RS04020 0.36 +0.5 962,411 + CA265_RS04020 0.36 +1.1 962,411 + CA265_RS04020 0.36 +0.8 962,412 - CA265_RS04020 0.36 -0.0 962,413 + CA265_RS04020 0.37 +0.4 962,413 + CA265_RS04020 0.37 +0.6 962,437 - CA265_RS04020 0.38 -0.3 962,459 - CA265_RS04020 0.40 +0.9 962,473 + CA265_RS04020 0.41 +1.0 962,605 - CA265_RS04020 0.51 +1.1 962,607 - CA265_RS04020 0.52 +0.5 962,625 + CA265_RS04020 0.53 +0.8 962,626 - CA265_RS04020 0.53 -2.3 962,637 - CA265_RS04020 0.54 +0.3 962,671 + CA265_RS04020 0.56 +0.2 962,726 + CA265_RS04020 0.61 +1.3 962,727 - CA265_RS04020 0.61 +0.3 962,772 - CA265_RS04020 0.64 -0.4 962,772 - CA265_RS04020 0.64 +0.1 962,774 - CA265_RS04020 0.64 -0.5 962,838 - CA265_RS04020 0.69 -1.9 962,873 - CA265_RS04020 0.72 -0.3 962,935 - CA265_RS04020 0.77 +0.1
Or see this region's nucleotide sequence