Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03985

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03980 and CA265_RS03985 are separated by 16 nucleotidesCA265_RS03985 and CA265_RS03990 overlap by 1 nucleotides CA265_RS03980: CA265_RS03980 - hypothetical protein, at 949,567 to 951,315 _RS03980 CA265_RS03985: CA265_RS03985 - hypothetical protein, at 951,332 to 953,290 _RS03985 CA265_RS03990: CA265_RS03990 - hypothetical protein, at 953,290 to 954,990 _RS03990 Position (kb) 951 952 953 954Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 950.359 kb on - strand, within CA265_RS03980at 950.386 kb on - strand, within CA265_RS03980at 950.389 kb on + strand, within CA265_RS03980at 950.389 kb on + strand, within CA265_RS03980at 950.401 kb on + strand, within CA265_RS03980at 950.492 kb on + strand, within CA265_RS03980at 950.493 kb on - strand, within CA265_RS03980at 950.529 kb on + strand, within CA265_RS03980at 950.530 kb on - strand, within CA265_RS03980at 950.559 kb on + strand, within CA265_RS03980at 950.605 kb on + strand, within CA265_RS03980at 950.605 kb on + strand, within CA265_RS03980at 950.605 kb on + strand, within CA265_RS03980at 950.606 kb on - strand, within CA265_RS03980at 950.606 kb on - strand, within CA265_RS03980at 950.635 kb on + strand, within CA265_RS03980at 950.635 kb on + strand, within CA265_RS03980at 950.635 kb on + strand, within CA265_RS03980at 950.637 kb on + strand, within CA265_RS03980at 950.655 kb on - strand, within CA265_RS03980at 950.675 kb on + strand, within CA265_RS03980at 950.696 kb on - strand, within CA265_RS03980at 950.785 kb on - strand, within CA265_RS03980at 950.799 kb on - strand, within CA265_RS03980at 950.847 kb on + strand, within CA265_RS03980at 950.848 kb on - strand, within CA265_RS03980at 950.883 kb on - strand, within CA265_RS03980at 950.949 kb on + strand, within CA265_RS03980at 950.950 kb on - strand, within CA265_RS03980at 950.954 kb on - strand, within CA265_RS03980at 950.954 kb on - strand, within CA265_RS03980at 950.959 kb on - strand, within CA265_RS03980at 950.959 kb on - strand, within CA265_RS03980at 951.063 kb on + strand, within CA265_RS03980at 951.063 kb on + strand, within CA265_RS03980at 951.074 kb on + strand, within CA265_RS03980at 951.136 kb on + strand, within CA265_RS03980at 951.137 kb on - strand, within CA265_RS03980at 951.161 kb on + strandat 951.162 kb on - strandat 951.162 kb on - strandat 951.171 kb on + strandat 951.213 kb on + strandat 951.230 kb on - strandat 951.230 kb on - strandat 951.240 kb on - strandat 951.243 kb on + strandat 951.251 kb on + strandat 951.297 kb on - strandat 951.309 kb on + strandat 951.310 kb on - strandat 951.487 kb on + strandat 951.487 kb on + strandat 951.488 kb on - strandat 951.493 kb on + strandat 951.502 kb on + strandat 951.636 kb on - strand, within CA265_RS03985at 951.636 kb on - strand, within CA265_RS03985at 951.637 kb on + strand, within CA265_RS03985at 951.638 kb on - strand, within CA265_RS03985at 951.638 kb on - strand, within CA265_RS03985at 951.640 kb on + strand, within CA265_RS03985at 951.650 kb on + strand, within CA265_RS03985at 951.681 kb on + strand, within CA265_RS03985at 951.696 kb on + strand, within CA265_RS03985at 951.705 kb on + strand, within CA265_RS03985at 951.712 kb on - strand, within CA265_RS03985at 951.728 kb on - strand, within CA265_RS03985at 951.790 kb on - strand, within CA265_RS03985at 951.835 kb on + strand, within CA265_RS03985at 951.836 kb on - strand, within CA265_RS03985at 951.838 kb on - strand, within CA265_RS03985at 951.838 kb on - strand, within CA265_RS03985at 951.842 kb on - strand, within CA265_RS03985at 951.842 kb on - strandat 951.842 kb on - strand, within CA265_RS03985at 951.844 kb on - strand, within CA265_RS03985at 951.886 kb on + strand, within CA265_RS03985at 951.955 kb on - strand, within CA265_RS03985at 952.021 kb on + strand, within CA265_RS03985at 952.021 kb on + strand, within CA265_RS03985at 952.039 kb on + strand, within CA265_RS03985at 952.040 kb on - strand, within CA265_RS03985at 952.072 kb on - strand, within CA265_RS03985at 952.159 kb on + strand, within CA265_RS03985at 952.188 kb on + strand, within CA265_RS03985at 952.188 kb on + strand, within CA265_RS03985at 952.189 kb on - strand, within CA265_RS03985at 952.200 kb on + strand, within CA265_RS03985at 952.240 kb on + strand, within CA265_RS03985at 952.270 kb on + strand, within CA265_RS03985at 952.270 kb on + strand, within CA265_RS03985at 952.317 kb on - strand, within CA265_RS03985at 952.333 kb on + strand, within CA265_RS03985at 952.353 kb on + strand, within CA265_RS03985at 952.388 kb on - strand, within CA265_RS03985at 952.412 kb on - strand, within CA265_RS03985at 952.414 kb on + strand, within CA265_RS03985at 952.415 kb on - strand, within CA265_RS03985at 952.436 kb on - strand, within CA265_RS03985at 952.441 kb on - strand, within CA265_RS03985at 952.478 kb on - strand, within CA265_RS03985at 952.478 kb on - strand, within CA265_RS03985at 952.481 kb on + strand, within CA265_RS03985at 952.610 kb on + strand, within CA265_RS03985at 952.611 kb on - strand, within CA265_RS03985at 952.660 kb on + strand, within CA265_RS03985at 952.669 kb on + strand, within CA265_RS03985at 952.669 kb on + strand, within CA265_RS03985at 952.742 kb on - strand, within CA265_RS03985at 952.759 kb on - strand, within CA265_RS03985at 952.812 kb on - strandat 952.853 kb on + strand, within CA265_RS03985at 952.854 kb on - strand, within CA265_RS03985at 952.856 kb on - strand, within CA265_RS03985at 952.859 kb on - strand, within CA265_RS03985at 952.917 kb on + strand, within CA265_RS03985at 952.929 kb on + strand, within CA265_RS03985at 952.955 kb on - strand, within CA265_RS03985at 952.992 kb on - strand, within CA265_RS03985at 953.041 kb on + strand, within CA265_RS03985at 953.049 kb on + strand, within CA265_RS03985at 953.050 kb on - strand, within CA265_RS03985at 953.084 kb on + strand, within CA265_RS03985at 953.088 kb on + strand, within CA265_RS03985at 953.089 kb on - strand, within CA265_RS03985at 953.089 kb on - strand, within CA265_RS03985at 953.097 kb on + strandat 953.202 kb on + strandat 953.202 kb on + strandat 953.249 kb on - strandat 953.252 kb on + strandat 953.252 kb on + strandat 953.253 kb on - strandat 953.257 kb on + strandat 953.258 kb on - strandat 953.321 kb on + strandat 953.325 kb on + strandat 953.330 kb on + strandat 953.330 kb on + strandat 953.330 kb on + strandat 953.454 kb on + strandat 953.505 kb on + strand, within CA265_RS03990at 953.539 kb on + strand, within CA265_RS03990at 953.545 kb on - strand, within CA265_RS03990at 953.589 kb on - strand, within CA265_RS03990at 953.595 kb on + strand, within CA265_RS03990at 953.655 kb on + strand, within CA265_RS03990at 953.680 kb on + strand, within CA265_RS03990at 953.681 kb on - strand, within CA265_RS03990at 953.691 kb on - strand, within CA265_RS03990at 953.758 kb on - strand, within CA265_RS03990at 953.762 kb on - strand, within CA265_RS03990at 953.769 kb on + strand, within CA265_RS03990at 953.770 kb on - strand, within CA265_RS03990at 953.829 kb on + strand, within CA265_RS03990at 953.852 kb on + strand, within CA265_RS03990at 953.882 kb on + strand, within CA265_RS03990at 953.882 kb on + strand, within CA265_RS03990at 953.908 kb on + strand, within CA265_RS03990at 953.929 kb on + strand, within CA265_RS03990at 954.084 kb on - strand, within CA265_RS03990at 954.084 kb on - strand, within CA265_RS03990at 954.085 kb on + strand, within CA265_RS03990at 954.086 kb on - strand, within CA265_RS03990at 954.086 kb on - strand, within CA265_RS03990at 954.086 kb on - strand, within CA265_RS03990at 954.086 kb on - strand, within CA265_RS03990at 954.130 kb on - strand, within CA265_RS03990at 954.132 kb on + strand, within CA265_RS03990at 954.151 kb on - strand, within CA265_RS03990at 954.270 kb on - strand, within CA265_RS03990at 954.274 kb on - strand, within CA265_RS03990at 954.287 kb on + strand, within CA265_RS03990

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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950,359 - CA265_RS03980 0.45 -0.9
950,386 - CA265_RS03980 0.47 -1.0
950,389 + CA265_RS03980 0.47 +0.5
950,389 + CA265_RS03980 0.47 -0.5
950,401 + CA265_RS03980 0.48 +0.2
950,492 + CA265_RS03980 0.53 -0.4
950,493 - CA265_RS03980 0.53 +0.3
950,529 + CA265_RS03980 0.55 +0.6
950,530 - CA265_RS03980 0.55 +2.7
950,559 + CA265_RS03980 0.57 +0.1
950,605 + CA265_RS03980 0.59 +0.2
950,605 + CA265_RS03980 0.59 +0.4
950,605 + CA265_RS03980 0.59 -1.5
950,606 - CA265_RS03980 0.59 +0.0
950,606 - CA265_RS03980 0.59 -1.0
950,635 + CA265_RS03980 0.61 +2.2
950,635 + CA265_RS03980 0.61 -0.6
950,635 + CA265_RS03980 0.61 -1.8
950,637 + CA265_RS03980 0.61 +0.0
950,655 - CA265_RS03980 0.62 +0.3
950,675 + CA265_RS03980 0.63 +0.5
950,696 - CA265_RS03980 0.65 -0.5
950,785 - CA265_RS03980 0.70 +1.5
950,799 - CA265_RS03980 0.70 +0.2
950,847 + CA265_RS03980 0.73 -0.5
950,848 - CA265_RS03980 0.73 +0.4
950,883 - CA265_RS03980 0.75 +0.8
950,949 + CA265_RS03980 0.79 +2.1
950,950 - CA265_RS03980 0.79 +0.1
950,954 - CA265_RS03980 0.79 +1.2
950,954 - CA265_RS03980 0.79 +0.5
950,959 - CA265_RS03980 0.80 +0.5
950,959 - CA265_RS03980 0.80 -0.2
951,063 + CA265_RS03980 0.86 +0.8
951,063 + CA265_RS03980 0.86 -0.2
951,074 + CA265_RS03980 0.86 -0.4
951,136 + CA265_RS03980 0.90 +1.7
951,137 - CA265_RS03980 0.90 +1.5
951,161 + +0.2
951,162 - -0.3
951,162 - +0.4
951,171 + +0.3
951,213 + -0.3
951,230 - -0.1
951,230 - +0.5
951,240 - +0.3
951,243 + +0.2
951,251 + +0.1
951,297 - -0.2
951,309 + +0.4
951,310 - +0.9
951,487 + -0.2
951,487 + +1.7
951,488 - -0.7
951,493 + -0.0
951,502 + +0.5
951,636 - CA265_RS03985 0.16 -0.3
951,636 - CA265_RS03985 0.16 -0.8
951,637 + CA265_RS03985 0.16 +0.2
951,638 - CA265_RS03985 0.16 +0.0
951,638 - CA265_RS03985 0.16 -0.8
951,640 + CA265_RS03985 0.16 +0.3
951,650 + CA265_RS03985 0.16 -0.1
951,681 + CA265_RS03985 0.18 -1.0
951,696 + CA265_RS03985 0.19 -0.2
951,705 + CA265_RS03985 0.19 -0.0
951,712 - CA265_RS03985 0.19 -0.5
951,728 - CA265_RS03985 0.20 +1.1
951,790 - CA265_RS03985 0.23 +0.4
951,835 + CA265_RS03985 0.26 +0.4
951,836 - CA265_RS03985 0.26 -0.2
951,838 - CA265_RS03985 0.26 -0.5
951,838 - CA265_RS03985 0.26 +1.2
951,842 - CA265_RS03985 0.26 +1.1
951,842 - +1.8
951,842 - CA265_RS03985 0.26 +0.7
951,844 - CA265_RS03985 0.26 -0.5
951,886 + CA265_RS03985 0.28 +0.2
951,955 - CA265_RS03985 0.32 +0.7
952,021 + CA265_RS03985 0.35 -0.6
952,021 + CA265_RS03985 0.35 +0.0
952,039 + CA265_RS03985 0.36 +0.0
952,040 - CA265_RS03985 0.36 +1.0
952,072 - CA265_RS03985 0.38 -0.1
952,159 + CA265_RS03985 0.42 -0.1
952,188 + CA265_RS03985 0.44 -0.4
952,188 + CA265_RS03985 0.44 +1.5
952,189 - CA265_RS03985 0.44 -0.2
952,200 + CA265_RS03985 0.44 +1.2
952,240 + CA265_RS03985 0.46 +0.0
952,270 + CA265_RS03985 0.48 -0.1
952,270 + CA265_RS03985 0.48 +0.8
952,317 - CA265_RS03985 0.50 -0.5
952,333 + CA265_RS03985 0.51 +0.4
952,353 + CA265_RS03985 0.52 -0.0
952,388 - CA265_RS03985 0.54 +0.4
952,412 - CA265_RS03985 0.55 +1.4
952,414 + CA265_RS03985 0.55 -0.1
952,415 - CA265_RS03985 0.55 -0.1
952,436 - CA265_RS03985 0.56 -0.3
952,441 - CA265_RS03985 0.57 -0.2
952,478 - CA265_RS03985 0.58 -0.5
952,478 - CA265_RS03985 0.58 +1.8
952,481 + CA265_RS03985 0.59 +0.2
952,610 + CA265_RS03985 0.65 -0.0
952,611 - CA265_RS03985 0.65 +0.3
952,660 + CA265_RS03985 0.68 -1.0
952,669 + CA265_RS03985 0.68 +0.7
952,669 + CA265_RS03985 0.68 +0.5
952,742 - CA265_RS03985 0.72 +0.3
952,759 - CA265_RS03985 0.73 -0.2
952,812 - -0.5
952,853 + CA265_RS03985 0.78 +0.5
952,854 - CA265_RS03985 0.78 +0.6
952,856 - CA265_RS03985 0.78 -1.3
952,859 - CA265_RS03985 0.78 +0.2
952,917 + CA265_RS03985 0.81 +0.7
952,929 + CA265_RS03985 0.82 -0.2
952,955 - CA265_RS03985 0.83 +0.2
952,992 - CA265_RS03985 0.85 -0.4
953,041 + CA265_RS03985 0.87 +0.4
953,049 + CA265_RS03985 0.88 +1.2
953,050 - CA265_RS03985 0.88 -0.0
953,084 + CA265_RS03985 0.89 +0.1
953,088 + CA265_RS03985 0.90 +0.8
953,089 - CA265_RS03985 0.90 +0.2
953,089 - CA265_RS03985 0.90 -0.2
953,097 + +1.3
953,202 + -0.9
953,202 + -0.8
953,249 - -0.5
953,252 + +1.8
953,252 + -1.5
953,253 - -0.1
953,257 + -2.8
953,258 - +0.1
953,321 + +0.5
953,325 + -0.3
953,330 + +0.2
953,330 + +1.1
953,330 + +0.4
953,454 + -1.7
953,505 + CA265_RS03990 0.13 +0.7
953,539 + CA265_RS03990 0.15 +0.9
953,545 - CA265_RS03990 0.15 -0.1
953,589 - CA265_RS03990 0.18 -0.3
953,595 + CA265_RS03990 0.18 +0.8
953,655 + CA265_RS03990 0.21 +0.4
953,680 + CA265_RS03990 0.23 -2.5
953,681 - CA265_RS03990 0.23 +0.7
953,691 - CA265_RS03990 0.24 +0.2
953,758 - CA265_RS03990 0.28 +0.4
953,762 - CA265_RS03990 0.28 +0.2
953,769 + CA265_RS03990 0.28 +0.5
953,770 - CA265_RS03990 0.28 +0.3
953,829 + CA265_RS03990 0.32 +0.4
953,852 + CA265_RS03990 0.33 +3.1
953,882 + CA265_RS03990 0.35 +0.2
953,882 + CA265_RS03990 0.35 -0.5
953,908 + CA265_RS03990 0.36 +0.2
953,929 + CA265_RS03990 0.38 +0.5
954,084 - CA265_RS03990 0.47 -0.3
954,084 - CA265_RS03990 0.47 +0.2
954,085 + CA265_RS03990 0.47 -0.3
954,086 - CA265_RS03990 0.47 +0.3
954,086 - CA265_RS03990 0.47 +0.1
954,086 - CA265_RS03990 0.47 +0.5
954,086 - CA265_RS03990 0.47 -1.5
954,130 - CA265_RS03990 0.49 +0.1
954,132 + CA265_RS03990 0.50 -0.8
954,151 - CA265_RS03990 0.51 +1.0
954,270 - CA265_RS03990 0.58 -0.7
954,274 - CA265_RS03990 0.58 -0.4
954,287 + CA265_RS03990 0.59 +0.1

Or see this region's nucleotide sequence