Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22245

Experiment: rhizosphere sample 4; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22240 and ABZR87_RS22245 are separated by 65 nucleotidesABZR87_RS22245 and ABZR87_RS22250 are separated by 115 nucleotides ABZR87_RS22240: ABZR87_RS22240 - flagellar hook-associated protein FlgL, at 1,350,424 to 1,351,383 _RS22240 ABZR87_RS22245: ABZR87_RS22245 - flagellar hook-associated protein FlgK, at 1,351,449 to 1,353,383 _RS22245 ABZR87_RS22250: ABZR87_RS22250 - flagellar assembly peptidoglycan hydrolase FlgJ, at 1,353,499 to 1,354,584 _RS22250 Position (kb) 1351 1352 1353 1354Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1350.533 kb on + strand, within ABZR87_RS22240at 1350.533 kb on + strand, within ABZR87_RS22240at 1350.555 kb on - strand, within ABZR87_RS22240at 1350.582 kb on - strand, within ABZR87_RS22240at 1350.662 kb on + strand, within ABZR87_RS22240at 1350.662 kb on + strand, within ABZR87_RS22240at 1350.663 kb on - strand, within ABZR87_RS22240at 1350.776 kb on + strand, within ABZR87_RS22240at 1350.777 kb on - strand, within ABZR87_RS22240at 1350.777 kb on - strand, within ABZR87_RS22240at 1350.777 kb on - strand, within ABZR87_RS22240at 1350.831 kb on + strand, within ABZR87_RS22240at 1350.832 kb on - strand, within ABZR87_RS22240at 1350.861 kb on - strand, within ABZR87_RS22240at 1350.920 kb on + strand, within ABZR87_RS22240at 1350.920 kb on + strand, within ABZR87_RS22240at 1350.921 kb on - strand, within ABZR87_RS22240at 1350.921 kb on - strand, within ABZR87_RS22240at 1350.921 kb on - strand, within ABZR87_RS22240at 1350.921 kb on - strand, within ABZR87_RS22240at 1350.921 kb on - strand, within ABZR87_RS22240at 1351.032 kb on - strand, within ABZR87_RS22240at 1351.032 kb on - strand, within ABZR87_RS22240at 1351.032 kb on - strand, within ABZR87_RS22240at 1351.199 kb on + strand, within ABZR87_RS22240at 1351.200 kb on - strand, within ABZR87_RS22240at 1351.371 kb on + strandat 1351.371 kb on + strandat 1351.371 kb on + strandat 1351.406 kb on + strandat 1351.406 kb on + strandat 1351.406 kb on + strandat 1351.406 kb on + strandat 1351.519 kb on + strandat 1351.520 kb on - strandat 1351.520 kb on - strandat 1351.520 kb on - strandat 1351.531 kb on + strandat 1351.531 kb on + strandat 1351.532 kb on - strandat 1351.532 kb on - strandat 1351.532 kb on - strandat 1351.532 kb on - strandat 1351.532 kb on - strandat 1351.532 kb on - strandat 1351.852 kb on + strand, within ABZR87_RS22245at 1351.870 kb on + strand, within ABZR87_RS22245at 1351.870 kb on + strand, within ABZR87_RS22245at 1351.871 kb on - strand, within ABZR87_RS22245at 1351.891 kb on + strand, within ABZR87_RS22245at 1351.891 kb on + strand, within ABZR87_RS22245at 1351.891 kb on + strand, within ABZR87_RS22245at 1351.892 kb on - strand, within ABZR87_RS22245at 1351.892 kb on - strand, within ABZR87_RS22245at 1351.892 kb on - strand, within ABZR87_RS22245at 1351.969 kb on + strand, within ABZR87_RS22245at 1351.969 kb on + strand, within ABZR87_RS22245at 1351.969 kb on + strand, within ABZR87_RS22245at 1351.969 kb on + strand, within ABZR87_RS22245at 1351.970 kb on - strand, within ABZR87_RS22245at 1352.008 kb on + strand, within ABZR87_RS22245at 1352.008 kb on + strand, within ABZR87_RS22245at 1352.009 kb on - strand, within ABZR87_RS22245at 1352.009 kb on - strand, within ABZR87_RS22245at 1352.009 kb on - strand, within ABZR87_RS22245at 1352.009 kb on - strand, within ABZR87_RS22245at 1352.275 kb on + strand, within ABZR87_RS22245at 1352.290 kb on + strand, within ABZR87_RS22245at 1352.291 kb on - strand, within ABZR87_RS22245at 1352.302 kb on + strand, within ABZR87_RS22245at 1352.302 kb on + strand, within ABZR87_RS22245at 1352.605 kb on + strand, within ABZR87_RS22245at 1352.606 kb on - strand, within ABZR87_RS22245at 1352.606 kb on - strand, within ABZR87_RS22245at 1352.632 kb on + strand, within ABZR87_RS22245at 1352.633 kb on - strand, within ABZR87_RS22245at 1352.633 kb on - strand, within ABZR87_RS22245at 1352.659 kb on + strand, within ABZR87_RS22245at 1352.659 kb on + strand, within ABZR87_RS22245at 1352.659 kb on + strand, within ABZR87_RS22245at 1352.701 kb on + strand, within ABZR87_RS22245at 1352.701 kb on + strand, within ABZR87_RS22245at 1352.701 kb on + strand, within ABZR87_RS22245at 1352.701 kb on + strand, within ABZR87_RS22245at 1352.701 kb on + strand, within ABZR87_RS22245at 1352.701 kb on + strand, within ABZR87_RS22245at 1352.701 kb on + strand, within ABZR87_RS22245at 1352.701 kb on + strand, within ABZR87_RS22245at 1352.702 kb on - strand, within ABZR87_RS22245at 1352.702 kb on - strand, within ABZR87_RS22245at 1352.702 kb on - strand, within ABZR87_RS22245at 1353.088 kb on + strand, within ABZR87_RS22245at 1353.088 kb on + strand, within ABZR87_RS22245at 1353.088 kb on + strand, within ABZR87_RS22245at 1353.088 kb on + strand, within ABZR87_RS22245at 1353.088 kb on + strand, within ABZR87_RS22245at 1353.088 kb on + strand, within ABZR87_RS22245at 1353.088 kb on + strand, within ABZR87_RS22245at 1353.089 kb on - strand, within ABZR87_RS22245at 1353.089 kb on - strand, within ABZR87_RS22245at 1353.089 kb on - strand, within ABZR87_RS22245at 1353.089 kb on - strand, within ABZR87_RS22245at 1353.089 kb on - strand, within ABZR87_RS22245at 1353.089 kb on - strand, within ABZR87_RS22245at 1353.089 kb on - strand, within ABZR87_RS22245at 1353.089 kb on - strand, within ABZR87_RS22245at 1353.089 kb on - strand, within ABZR87_RS22245at 1353.089 kb on - strand, within ABZR87_RS22245at 1353.182 kb on - strand, within ABZR87_RS22245at 1353.182 kb on - strand, within ABZR87_RS22245at 1353.182 kb on - strand, within ABZR87_RS22245at 1353.182 kb on - strand, within ABZR87_RS22245at 1353.182 kb on - strand, within ABZR87_RS22245at 1353.182 kb on - strand, within ABZR87_RS22245at 1353.223 kb on + strandat 1353.238 kb on + strandat 1353.239 kb on - strandat 1353.281 kb on - strandat 1353.363 kb on - strandat 1353.383 kb on + strandat 1353.383 kb on + strandat 1353.383 kb on + strandat 1353.383 kb on + strandat 1353.383 kb on + strandat 1353.383 kb on + strandat 1353.383 kb on + strandat 1353.384 kb on - strandat 1353.384 kb on - strandat 1353.384 kb on - strandat 1353.384 kb on - strandat 1353.384 kb on - strandat 1353.384 kb on - strandat 1353.384 kb on - strandat 1353.384 kb on - strandat 1353.384 kb on - strandat 1353.384 kb on - strandat 1353.384 kb on - strandat 1353.384 kb on - strandat 1353.384 kb on - strandat 1353.384 kb on - strandat 1353.384 kb on - strandat 1353.420 kb on + strandat 1353.420 kb on + strandat 1353.421 kb on - strandat 1353.421 kb on - strandat 1353.421 kb on - strandat 1353.421 kb on - strandat 1353.427 kb on + strandat 1353.428 kb on - strandat 1353.428 kb on - strandat 1353.539 kb on + strandat 1353.539 kb on + strandat 1353.539 kb on + strandat 1353.540 kb on - strandat 1353.558 kb on - strandat 1353.558 kb on - strandat 1353.659 kb on + strand, within ABZR87_RS22250at 1353.659 kb on + strand, within ABZR87_RS22250at 1353.659 kb on + strand, within ABZR87_RS22250at 1353.660 kb on - strand, within ABZR87_RS22250at 1353.690 kb on - strand, within ABZR87_RS22250at 1353.734 kb on + strand, within ABZR87_RS22250at 1353.734 kb on + strand, within ABZR87_RS22250at 1353.735 kb on - strand, within ABZR87_RS22250at 1353.744 kb on + strand, within ABZR87_RS22250at 1353.790 kb on - strand, within ABZR87_RS22250at 1353.790 kb on - strand, within ABZR87_RS22250at 1353.939 kb on - strand, within ABZR87_RS22250at 1353.939 kb on - strand, within ABZR87_RS22250at 1353.939 kb on - strand, within ABZR87_RS22250at 1354.218 kb on + strand, within ABZR87_RS22250at 1354.218 kb on + strand, within ABZR87_RS22250at 1354.219 kb on - strand, within ABZR87_RS22250at 1354.219 kb on - strand, within ABZR87_RS22250at 1354.379 kb on + strand, within ABZR87_RS22250at 1354.379 kb on + strand, within ABZR87_RS22250at 1354.379 kb on + strand, within ABZR87_RS22250at 1354.379 kb on + strand, within ABZR87_RS22250at 1354.379 kb on + strand, within ABZR87_RS22250at 1354.380 kb on - strand, within ABZR87_RS22250at 1354.380 kb on - strand, within ABZR87_RS22250at 1354.380 kb on - strand, within ABZR87_RS22250

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 4; outgrowth in LB
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1,350,533 + ABZR87_RS22240 0.11 +2.1
1,350,533 + ABZR87_RS22240 0.11 +2.0
1,350,555 - ABZR87_RS22240 0.14 +2.0
1,350,582 - ABZR87_RS22240 0.16 +2.1
1,350,662 + ABZR87_RS22240 0.25 +2.0
1,350,662 + ABZR87_RS22240 0.25 +1.4
1,350,663 - ABZR87_RS22240 0.25 +2.0
1,350,776 + ABZR87_RS22240 0.37 +2.5
1,350,777 - ABZR87_RS22240 0.37 +1.8
1,350,777 - ABZR87_RS22240 0.37 +2.0
1,350,777 - ABZR87_RS22240 0.37 +1.6
1,350,831 + ABZR87_RS22240 0.42 +1.2
1,350,832 - ABZR87_RS22240 0.42 +3.4
1,350,861 - ABZR87_RS22240 0.46 +1.5
1,350,920 + ABZR87_RS22240 0.52 +1.6
1,350,920 + ABZR87_RS22240 0.52 +1.2
1,350,921 - ABZR87_RS22240 0.52 +2.5
1,350,921 - ABZR87_RS22240 0.52 +1.3
1,350,921 - ABZR87_RS22240 0.52 +1.9
1,350,921 - ABZR87_RS22240 0.52 +2.1
1,350,921 - ABZR87_RS22240 0.52 +1.6
1,351,032 - ABZR87_RS22240 0.63 +1.2
1,351,032 - ABZR87_RS22240 0.63 +2.4
1,351,032 - ABZR87_RS22240 0.63 +3.3
1,351,199 + ABZR87_RS22240 0.81 +2.4
1,351,200 - ABZR87_RS22240 0.81 +2.8
1,351,371 + +1.1
1,351,371 + +1.8
1,351,371 + +2.6
1,351,406 + +1.6
1,351,406 + +1.1
1,351,406 + +1.2
1,351,406 + +1.8
1,351,519 + +2.1
1,351,520 - +2.1
1,351,520 - +2.8
1,351,520 - +2.3
1,351,531 + +2.2
1,351,531 + +1.2
1,351,532 - +2.5
1,351,532 - +2.4
1,351,532 - +1.9
1,351,532 - +1.7
1,351,532 - +1.6
1,351,532 - +1.9
1,351,852 + ABZR87_RS22245 0.21 +1.5
1,351,870 + ABZR87_RS22245 0.22 +2.3
1,351,870 + ABZR87_RS22245 0.22 +2.1
1,351,871 - ABZR87_RS22245 0.22 +1.2
1,351,891 + ABZR87_RS22245 0.23 +2.1
1,351,891 + ABZR87_RS22245 0.23 +1.4
1,351,891 + ABZR87_RS22245 0.23 +1.1
1,351,892 - ABZR87_RS22245 0.23 +1.9
1,351,892 - ABZR87_RS22245 0.23 +2.2
1,351,892 - ABZR87_RS22245 0.23 +2.0
1,351,969 + ABZR87_RS22245 0.27 +1.3
1,351,969 + ABZR87_RS22245 0.27 +2.1
1,351,969 + ABZR87_RS22245 0.27 +1.9
1,351,969 + ABZR87_RS22245 0.27 +3.6
1,351,970 - ABZR87_RS22245 0.27 +1.6
1,352,008 + ABZR87_RS22245 0.29 +2.5
1,352,008 + ABZR87_RS22245 0.29 +1.1
1,352,009 - ABZR87_RS22245 0.29 +1.8
1,352,009 - ABZR87_RS22245 0.29 +2.2
1,352,009 - ABZR87_RS22245 0.29 +3.3
1,352,009 - ABZR87_RS22245 0.29 +2.8
1,352,275 + ABZR87_RS22245 0.43 +1.9
1,352,290 + ABZR87_RS22245 0.43 +1.9
1,352,291 - ABZR87_RS22245 0.44 +2.3
1,352,302 + ABZR87_RS22245 0.44 +1.6
1,352,302 + ABZR87_RS22245 0.44 +1.3
1,352,605 + ABZR87_RS22245 0.60 +1.8
1,352,606 - ABZR87_RS22245 0.60 +1.9
1,352,606 - ABZR87_RS22245 0.60 +2.1
1,352,632 + ABZR87_RS22245 0.61 +2.4
1,352,633 - ABZR87_RS22245 0.61 +1.3
1,352,633 - ABZR87_RS22245 0.61 +2.2
1,352,659 + ABZR87_RS22245 0.63 +2.0
1,352,659 + ABZR87_RS22245 0.63 +2.8
1,352,659 + ABZR87_RS22245 0.63 +1.1
1,352,701 + ABZR87_RS22245 0.65 +2.2
1,352,701 + ABZR87_RS22245 0.65 +2.4
1,352,701 + ABZR87_RS22245 0.65 +1.7
1,352,701 + ABZR87_RS22245 0.65 +2.0
1,352,701 + ABZR87_RS22245 0.65 +2.3
1,352,701 + ABZR87_RS22245 0.65 +1.9
1,352,701 + ABZR87_RS22245 0.65 +2.9
1,352,701 + ABZR87_RS22245 0.65 +1.6
1,352,702 - ABZR87_RS22245 0.65 +1.5
1,352,702 - ABZR87_RS22245 0.65 +2.3
1,352,702 - ABZR87_RS22245 0.65 +1.5
1,353,088 + ABZR87_RS22245 0.85 +1.7
1,353,088 + ABZR87_RS22245 0.85 +2.7
1,353,088 + ABZR87_RS22245 0.85 +1.5
1,353,088 + ABZR87_RS22245 0.85 +1.8
1,353,088 + ABZR87_RS22245 0.85 +1.8
1,353,088 + ABZR87_RS22245 0.85 +0.9
1,353,088 + ABZR87_RS22245 0.85 +2.3
1,353,089 - ABZR87_RS22245 0.85 +1.5
1,353,089 - ABZR87_RS22245 0.85 +2.2
1,353,089 - ABZR87_RS22245 0.85 +1.6
1,353,089 - ABZR87_RS22245 0.85 +1.6
1,353,089 - ABZR87_RS22245 0.85 +2.8
1,353,089 - ABZR87_RS22245 0.85 +2.1
1,353,089 - ABZR87_RS22245 0.85 +2.0
1,353,089 - ABZR87_RS22245 0.85 +0.7
1,353,089 - ABZR87_RS22245 0.85 +1.0
1,353,089 - ABZR87_RS22245 0.85 +1.3
1,353,182 - ABZR87_RS22245 0.90 +1.6
1,353,182 - ABZR87_RS22245 0.90 +1.6
1,353,182 - ABZR87_RS22245 0.90 +1.1
1,353,182 - ABZR87_RS22245 0.90 +2.0
1,353,182 - ABZR87_RS22245 0.90 +1.0
1,353,182 - ABZR87_RS22245 0.90 +1.7
1,353,223 + +1.9
1,353,238 + +1.9
1,353,239 - +2.3
1,353,281 - +2.0
1,353,363 - +1.4
1,353,383 + +3.3
1,353,383 + +2.3
1,353,383 + +3.2
1,353,383 + +1.9
1,353,383 + +2.8
1,353,383 + +2.5
1,353,383 + +0.3
1,353,384 - +0.8
1,353,384 - +0.5
1,353,384 - +0.1
1,353,384 - +0.2
1,353,384 - +1.9
1,353,384 - +0.4
1,353,384 - +0.9
1,353,384 - +0.0
1,353,384 - -0.9
1,353,384 - +0.5
1,353,384 - -1.6
1,353,384 - +1.7
1,353,384 - +0.1
1,353,384 - -0.2
1,353,384 - -1.4
1,353,420 + +2.4
1,353,420 + +1.5
1,353,421 - +0.3
1,353,421 - -1.9
1,353,421 - -1.3
1,353,421 - -0.0
1,353,427 + -0.5
1,353,428 - +0.6
1,353,428 - -0.3
1,353,539 + +3.7
1,353,539 + +3.2
1,353,539 + +3.1
1,353,540 - +2.4
1,353,558 - +3.1
1,353,558 - +2.6
1,353,659 + ABZR87_RS22250 0.15 +2.3
1,353,659 + ABZR87_RS22250 0.15 +4.1
1,353,659 + ABZR87_RS22250 0.15 +2.4
1,353,660 - ABZR87_RS22250 0.15 +3.3
1,353,690 - ABZR87_RS22250 0.18 +2.1
1,353,734 + ABZR87_RS22250 0.22 +3.6
1,353,734 + ABZR87_RS22250 0.22 +2.1
1,353,735 - ABZR87_RS22250 0.22 +2.1
1,353,744 + ABZR87_RS22250 0.23 +2.5
1,353,790 - ABZR87_RS22250 0.27 +3.9
1,353,790 - ABZR87_RS22250 0.27 +2.3
1,353,939 - ABZR87_RS22250 0.41 +2.8
1,353,939 - ABZR87_RS22250 0.41 +3.2
1,353,939 - ABZR87_RS22250 0.41 +2.2
1,354,218 + ABZR87_RS22250 0.66 +2.7
1,354,218 + ABZR87_RS22250 0.66 +2.4
1,354,219 - ABZR87_RS22250 0.66 +3.9
1,354,219 - ABZR87_RS22250 0.66 +2.3
1,354,379 + ABZR87_RS22250 0.81 +2.6
1,354,379 + ABZR87_RS22250 0.81 +2.4
1,354,379 + ABZR87_RS22250 0.81 +2.7
1,354,379 + ABZR87_RS22250 0.81 +3.1
1,354,379 + ABZR87_RS22250 0.81 +2.6
1,354,380 - ABZR87_RS22250 0.81 +2.6
1,354,380 - ABZR87_RS22250 0.81 +3.2
1,354,380 - ABZR87_RS22250 0.81 +2.6

Or see this region's nucleotide sequence