Experiment: rhizosphere sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20380 and ABZR87_RS20385 are separated by 58 nucleotides ABZR87_RS20385 and ABZR87_RS20390 are separated by 9 nucleotides ABZR87_RS20390 and ABZR87_RS20395 are separated by 197 nucleotides
ABZR87_RS20380: ABZR87_RS20380 - ABC transporter substrate-binding protein, at 960,348 to 961,355
_RS20380
ABZR87_RS20385: ABZR87_RS20385 - class II aldolase/adducin family protein, at 961,414 to 962,253
_RS20385
ABZR87_RS20390: ABZR87_RS20390 - LLM class flavin-dependent oxidoreductase, at 962,263 to 963,354
_RS20390
ABZR87_RS20395: ABZR87_RS20395 - acyl-CoA dehydrogenase family protein, at 963,552 to 964,760
_RS20395
Position (kb) 962
963
964 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 961.317 kb on + strand at 961.318 kb on - strand at 961.383 kb on - strand at 961.416 kb on - strand at 961.454 kb on + strand at 961.509 kb on + strand, within ABZR87_RS20385 at 961.509 kb on + strand, within ABZR87_RS20385 at 961.509 kb on + strand, within ABZR87_RS20385 at 961.598 kb on + strand, within ABZR87_RS20385 at 961.598 kb on + strand, within ABZR87_RS20385 at 961.599 kb on - strand, within ABZR87_RS20385 at 961.599 kb on - strand, within ABZR87_RS20385 at 961.599 kb on - strand, within ABZR87_RS20385 at 961.599 kb on - strand, within ABZR87_RS20385 at 961.772 kb on + strand, within ABZR87_RS20385 at 961.772 kb on + strand, within ABZR87_RS20385 at 961.773 kb on - strand, within ABZR87_RS20385 at 961.838 kb on + strand, within ABZR87_RS20385 at 961.839 kb on - strand, within ABZR87_RS20385 at 961.851 kb on + strand, within ABZR87_RS20385 at 961.852 kb on - strand, within ABZR87_RS20385 at 962.396 kb on + strand, within ABZR87_RS20390 at 962.396 kb on + strand, within ABZR87_RS20390 at 962.396 kb on + strand, within ABZR87_RS20390 at 962.396 kb on + strand, within ABZR87_RS20390 at 962.397 kb on - strand, within ABZR87_RS20390 at 962.399 kb on + strand, within ABZR87_RS20390 at 962.771 kb on + strand, within ABZR87_RS20390 at 962.771 kb on + strand, within ABZR87_RS20390 at 962.807 kb on - strand, within ABZR87_RS20390 at 962.828 kb on + strand, within ABZR87_RS20390 at 962.829 kb on - strand, within ABZR87_RS20390 at 962.888 kb on + strand, within ABZR87_RS20390 at 962.889 kb on - strand, within ABZR87_RS20390 at 962.889 kb on - strand, within ABZR87_RS20390 at 962.889 kb on - strand, within ABZR87_RS20390 at 962.889 kb on - strand, within ABZR87_RS20390 at 962.951 kb on + strand, within ABZR87_RS20390 at 962.952 kb on - strand, within ABZR87_RS20390 at 963.165 kb on - strand, within ABZR87_RS20390 at 963.165 kb on - strand, within ABZR87_RS20390 at 963.259 kb on + strand at 963.259 kb on + strand at 963.260 kb on - strand at 963.260 kb on - strand at 963.263 kb on + strand at 963.378 kb on + strand at 963.470 kb on + strand at 963.471 kb on - strand at 963.471 kb on - strand at 963.472 kb on + strand at 963.473 kb on - strand at 963.473 kb on - strand at 963.473 kb on - strand at 963.479 kb on + strand at 963.479 kb on + strand at 963.480 kb on - strand at 963.831 kb on + strand, within ABZR87_RS20395 at 963.831 kb on + strand, within ABZR87_RS20395 at 963.832 kb on - strand, within ABZR87_RS20395 at 963.864 kb on - strand, within ABZR87_RS20395 at 964.039 kb on - strand, within ABZR87_RS20395
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 4; outgrowth in LB remove 961,317 + +0.1 961,318 - +0.5 961,383 - -0.8 961,416 - -0.5 961,454 + -0.2 961,509 + ABZR87_RS20385 0.11 -0.1 961,509 + ABZR87_RS20385 0.11 -1.1 961,509 + ABZR87_RS20385 0.11 -1.5 961,598 + ABZR87_RS20385 0.22 +1.5 961,598 + ABZR87_RS20385 0.22 -0.5 961,599 - ABZR87_RS20385 0.22 -0.9 961,599 - ABZR87_RS20385 0.22 -0.4 961,599 - ABZR87_RS20385 0.22 +0.4 961,599 - ABZR87_RS20385 0.22 -0.6 961,772 + ABZR87_RS20385 0.43 +1.5 961,772 + ABZR87_RS20385 0.43 +0.7 961,773 - ABZR87_RS20385 0.43 +0.2 961,838 + ABZR87_RS20385 0.50 +0.0 961,839 - ABZR87_RS20385 0.51 +1.0 961,851 + ABZR87_RS20385 0.52 +1.8 961,852 - ABZR87_RS20385 0.52 -0.2 962,396 + ABZR87_RS20390 0.12 +0.8 962,396 + ABZR87_RS20390 0.12 +0.3 962,396 + ABZR87_RS20390 0.12 -0.4 962,396 + ABZR87_RS20390 0.12 -0.1 962,397 - ABZR87_RS20390 0.12 +2.7 962,399 + ABZR87_RS20390 0.12 +0.2 962,771 + ABZR87_RS20390 0.47 +1.6 962,771 + ABZR87_RS20390 0.47 -0.8 962,807 - ABZR87_RS20390 0.50 -1.5 962,828 + ABZR87_RS20390 0.52 +0.0 962,829 - ABZR87_RS20390 0.52 -0.0 962,888 + ABZR87_RS20390 0.57 +1.9 962,889 - ABZR87_RS20390 0.57 +0.1 962,889 - ABZR87_RS20390 0.57 -0.8 962,889 - ABZR87_RS20390 0.57 +0.8 962,889 - ABZR87_RS20390 0.57 -1.3 962,951 + ABZR87_RS20390 0.63 +2.4 962,952 - ABZR87_RS20390 0.63 +1.0 963,165 - ABZR87_RS20390 0.83 -0.6 963,165 - ABZR87_RS20390 0.83 +0.0 963,259 + -3.0 963,259 + +0.3 963,260 - +0.6 963,260 - -1.6 963,263 + +0.0 963,378 + +1.0 963,470 + -0.8 963,471 - +0.6 963,471 - -0.8 963,472 + -0.8 963,473 - -0.1 963,473 - +0.3 963,473 - -0.4 963,479 + +1.4 963,479 + -0.7 963,480 - -0.3 963,831 + ABZR87_RS20395 0.23 +1.7 963,831 + ABZR87_RS20395 0.23 -2.0 963,832 - ABZR87_RS20395 0.23 +0.5 963,864 - ABZR87_RS20395 0.26 +0.5 964,039 - ABZR87_RS20395 0.40 -0.9
Or see this region's nucleotide sequence