Experiment: rhizosphere sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20150 and ABZR87_RS20155 overlap by 4 nucleotides ABZR87_RS20155 and ABZR87_RS20160 are separated by 2 nucleotides ABZR87_RS20160 and ABZR87_RS20165 are separated by 92 nucleotides
ABZR87_RS20150: ABZR87_RS20150 - type VI secretion system membrane subunit TssM, at 901,774 to 905,724
_RS20150
ABZR87_RS20155: ABZR87_RS20155 - type VI secretion system-associated protein TagF, at 905,721 to 906,716
_RS20155
ABZR87_RS20160: ABZR87_RS20160 - OmpA family protein, at 906,719 to 907,537
_RS20160
ABZR87_RS20165: ABZR87_RS20165 - TIGR04222 domain-containing membrane protein, at 907,630 to 909,072
_RS20165
Position (kb) 906
907
908 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 905.880 kb on + strand, within ABZR87_RS20155 at 905.880 kb on + strand, within ABZR87_RS20155 at 905.880 kb on + strand, within ABZR87_RS20155 at 905.880 kb on + strand, within ABZR87_RS20155 at 905.880 kb on + strand, within ABZR87_RS20155 at 905.880 kb on + strand, within ABZR87_RS20155 at 905.881 kb on - strand, within ABZR87_RS20155 at 905.881 kb on - strand, within ABZR87_RS20155 at 905.881 kb on - strand, within ABZR87_RS20155 at 905.881 kb on - strand, within ABZR87_RS20155 at 905.881 kb on - strand, within ABZR87_RS20155 at 906.387 kb on + strand, within ABZR87_RS20155 at 906.388 kb on - strand, within ABZR87_RS20155 at 906.558 kb on + strand, within ABZR87_RS20155 at 906.558 kb on + strand, within ABZR87_RS20155 at 906.559 kb on - strand, within ABZR87_RS20155 at 906.621 kb on + strand at 906.621 kb on + strand at 906.622 kb on - strand at 906.645 kb on + strand at 906.686 kb on + strand at 906.788 kb on + strand at 906.788 kb on + strand at 906.789 kb on - strand at 906.789 kb on - strand at 906.921 kb on - strand, within ABZR87_RS20160 at 907.142 kb on + strand, within ABZR87_RS20160 at 907.142 kb on + strand, within ABZR87_RS20160 at 907.142 kb on + strand, within ABZR87_RS20160 at 907.142 kb on + strand, within ABZR87_RS20160 at 907.142 kb on + strand, within ABZR87_RS20160 at 907.403 kb on + strand, within ABZR87_RS20160 at 907.403 kb on + strand, within ABZR87_RS20160 at 907.404 kb on - strand, within ABZR87_RS20160 at 907.531 kb on + strand at 907.603 kb on + strand at 907.603 kb on + strand at 907.603 kb on + strand at 907.676 kb on + strand at 907.677 kb on - strand at 907.677 kb on - strand at 907.677 kb on - strand at 907.678 kb on + strand at 907.678 kb on + strand at 907.678 kb on + strand at 907.678 kb on + strand at 907.679 kb on - strand at 907.679 kb on - strand at 907.680 kb on + strand at 907.680 kb on + strand at 907.680 kb on + strand at 907.680 kb on + strand at 907.680 kb on + strand at 907.680 kb on + strand at 907.680 kb on + strand at 907.680 kb on + strand at 907.681 kb on - strand at 907.681 kb on - strand at 907.681 kb on - strand at 907.681 kb on - strand at 907.681 kb on - strand at 907.681 kb on - strand at 907.702 kb on + strand at 907.702 kb on + strand at 907.702 kb on + strand at 907.703 kb on - strand at 907.703 kb on - strand at 907.703 kb on - strand at 907.717 kb on + strand at 907.804 kb on + strand, within ABZR87_RS20165 at 907.805 kb on - strand, within ABZR87_RS20165 at 907.805 kb on - strand, within ABZR87_RS20165 at 907.888 kb on + strand, within ABZR87_RS20165 at 907.921 kb on + strand, within ABZR87_RS20165 at 907.921 kb on + strand, within ABZR87_RS20165 at 908.081 kb on + strand, within ABZR87_RS20165 at 908.082 kb on - strand, within ABZR87_RS20165 at 908.082 kb on - strand, within ABZR87_RS20165 at 908.152 kb on + strand, within ABZR87_RS20165 at 908.153 kb on - strand, within ABZR87_RS20165 at 908.153 kb on - strand, within ABZR87_RS20165 at 908.179 kb on + strand, within ABZR87_RS20165 at 908.179 kb on + strand, within ABZR87_RS20165 at 908.180 kb on - strand, within ABZR87_RS20165 at 908.237 kb on - strand, within ABZR87_RS20165 at 908.237 kb on - strand, within ABZR87_RS20165 at 908.237 kb on - strand, within ABZR87_RS20165 at 908.237 kb on - strand, within ABZR87_RS20165 at 908.416 kb on + strand, within ABZR87_RS20165 at 908.416 kb on + strand, within ABZR87_RS20165 at 908.416 kb on + strand, within ABZR87_RS20165 at 908.416 kb on + strand, within ABZR87_RS20165 at 908.416 kb on + strand, within ABZR87_RS20165 at 908.416 kb on + strand, within ABZR87_RS20165 at 908.417 kb on - strand, within ABZR87_RS20165 at 908.417 kb on - strand, within ABZR87_RS20165 at 908.417 kb on - strand, within ABZR87_RS20165 at 908.417 kb on - strand, within ABZR87_RS20165 at 908.417 kb on - strand, within ABZR87_RS20165 at 908.417 kb on - strand, within ABZR87_RS20165 at 908.417 kb on - strand, within ABZR87_RS20165 at 908.417 kb on - strand, within ABZR87_RS20165
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 4; outgrowth in LB remove 905,880 + ABZR87_RS20155 0.16 +0.2 905,880 + ABZR87_RS20155 0.16 +1.4 905,880 + ABZR87_RS20155 0.16 +0.5 905,880 + ABZR87_RS20155 0.16 -1.1 905,880 + ABZR87_RS20155 0.16 -0.2 905,880 + ABZR87_RS20155 0.16 +1.5 905,881 - ABZR87_RS20155 0.16 -0.5 905,881 - ABZR87_RS20155 0.16 -0.3 905,881 - ABZR87_RS20155 0.16 +1.1 905,881 - ABZR87_RS20155 0.16 -1.2 905,881 - ABZR87_RS20155 0.16 +0.3 906,387 + ABZR87_RS20155 0.67 +0.5 906,388 - ABZR87_RS20155 0.67 -2.6 906,558 + ABZR87_RS20155 0.84 +1.9 906,558 + ABZR87_RS20155 0.84 -0.3 906,559 - ABZR87_RS20155 0.84 +0.8 906,621 + -0.2 906,621 + -0.0 906,622 - -0.0 906,645 + -0.4 906,686 + -0.3 906,788 + -1.5 906,788 + -1.0 906,789 - -1.1 906,789 - -0.1 906,921 - ABZR87_RS20160 0.25 +0.8 907,142 + ABZR87_RS20160 0.52 -1.3 907,142 + ABZR87_RS20160 0.52 -1.8 907,142 + ABZR87_RS20160 0.52 -2.0 907,142 + ABZR87_RS20160 0.52 -1.5 907,142 + ABZR87_RS20160 0.52 +0.5 907,403 + ABZR87_RS20160 0.84 -0.1 907,403 + ABZR87_RS20160 0.84 -0.0 907,404 - ABZR87_RS20160 0.84 -0.3 907,531 + -0.9 907,603 + -1.5 907,603 + +1.2 907,603 + -0.6 907,676 + -0.8 907,677 - +0.6 907,677 - -0.0 907,677 - -0.4 907,678 + +0.2 907,678 + +0.4 907,678 + -0.6 907,678 + -0.3 907,679 - -1.2 907,679 - -0.8 907,680 + -0.6 907,680 + -1.0 907,680 + -0.1 907,680 + -1.7 907,680 + -0.4 907,680 + +0.3 907,680 + -0.8 907,680 + +0.2 907,681 - +0.1 907,681 - +0.4 907,681 - -1.3 907,681 - -0.3 907,681 - +0.8 907,681 - -0.3 907,702 + +0.5 907,702 + +1.1 907,702 + -0.1 907,703 - +1.4 907,703 - -0.3 907,703 - +2.1 907,717 + -1.4 907,804 + ABZR87_RS20165 0.12 -0.6 907,805 - ABZR87_RS20165 0.12 -0.1 907,805 - ABZR87_RS20165 0.12 +1.0 907,888 + ABZR87_RS20165 0.18 -1.0 907,921 + ABZR87_RS20165 0.20 -1.3 907,921 + ABZR87_RS20165 0.20 +1.1 908,081 + ABZR87_RS20165 0.31 +0.1 908,082 - ABZR87_RS20165 0.31 -0.1 908,082 - ABZR87_RS20165 0.31 -2.7 908,152 + ABZR87_RS20165 0.36 +0.1 908,153 - ABZR87_RS20165 0.36 -0.3 908,153 - ABZR87_RS20165 0.36 +0.3 908,179 + ABZR87_RS20165 0.38 -0.3 908,179 + ABZR87_RS20165 0.38 +1.2 908,180 - ABZR87_RS20165 0.38 +1.2 908,237 - ABZR87_RS20165 0.42 -0.6 908,237 - ABZR87_RS20165 0.42 +0.2 908,237 - ABZR87_RS20165 0.42 -1.1 908,237 - ABZR87_RS20165 0.42 -1.4 908,416 + ABZR87_RS20165 0.54 -0.8 908,416 + ABZR87_RS20165 0.54 -0.6 908,416 + ABZR87_RS20165 0.54 +1.1 908,416 + ABZR87_RS20165 0.54 +0.4 908,416 + ABZR87_RS20165 0.54 +0.6 908,416 + ABZR87_RS20165 0.54 +3.9 908,417 - ABZR87_RS20165 0.55 +0.2 908,417 - ABZR87_RS20165 0.55 +0.9 908,417 - ABZR87_RS20165 0.55 -0.2 908,417 - ABZR87_RS20165 0.55 -1.4 908,417 - ABZR87_RS20165 0.55 -0.1 908,417 - ABZR87_RS20165 0.55 +0.2 908,417 - ABZR87_RS20165 0.55 +0.9 908,417 - ABZR87_RS20165 0.55 -0.2
Or see this region's nucleotide sequence