Experiment: rhizosphere sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19555 and ABZR87_RS19560 are separated by 1 nucleotides ABZR87_RS19560 and ABZR87_RS19565 overlap by 4 nucleotides ABZR87_RS19565 and ABZR87_RS19570 are separated by 91 nucleotides
ABZR87_RS19555: ABZR87_RS19555 - type II secretion system F family protein, at 759,468 to 760,457
_RS19555
ABZR87_RS19560: ABZR87_RS19560 - lipoprotein, at 760,459 to 761,394
_RS19560
ABZR87_RS19565: ABZR87_RS19565 - DUF3613 domain-containing protein, at 761,391 to 761,720
_RS19565
ABZR87_RS19570: ABZR87_RS19570 - TadG family pilus assembly protein, at 761,812 to 763,455
_RS19570
Position (kb) 760
761
762 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 759.804 kb on + strand, within ABZR87_RS19555 at 759.805 kb on - strand, within ABZR87_RS19555 at 759.842 kb on + strand, within ABZR87_RS19555 at 759.842 kb on + strand, within ABZR87_RS19555 at 759.843 kb on - strand, within ABZR87_RS19555 at 759.843 kb on - strand, within ABZR87_RS19555 at 759.940 kb on - strand, within ABZR87_RS19555 at 759.950 kb on + strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 760.181 kb on + strand, within ABZR87_RS19555 at 760.223 kb on + strand, within ABZR87_RS19555 at 760.224 kb on - strand, within ABZR87_RS19555 at 760.224 kb on - strand, within ABZR87_RS19555 at 760.442 kb on + strand at 760.442 kb on + strand at 760.678 kb on + strand, within ABZR87_RS19560 at 760.678 kb on + strand, within ABZR87_RS19560 at 760.678 kb on + strand, within ABZR87_RS19560 at 760.679 kb on - strand, within ABZR87_RS19560 at 760.679 kb on - strand, within ABZR87_RS19560 at 760.679 kb on - strand, within ABZR87_RS19560 at 760.681 kb on + strand, within ABZR87_RS19560 at 760.681 kb on + strand, within ABZR87_RS19560 at 760.681 kb on + strand, within ABZR87_RS19560 at 760.682 kb on - strand, within ABZR87_RS19560 at 760.682 kb on - strand, within ABZR87_RS19560 at 760.699 kb on - strand, within ABZR87_RS19560 at 760.709 kb on - strand, within ABZR87_RS19560 at 760.709 kb on - strand, within ABZR87_RS19560 at 760.721 kb on - strand, within ABZR87_RS19560 at 761.568 kb on + strand, within ABZR87_RS19565 at 761.568 kb on + strand, within ABZR87_RS19565 at 761.568 kb on + strand, within ABZR87_RS19565 at 761.568 kb on + strand, within ABZR87_RS19565 at 761.569 kb on - strand, within ABZR87_RS19565 at 761.569 kb on - strand, within ABZR87_RS19565 at 761.569 kb on - strand, within ABZR87_RS19565 at 761.616 kb on + strand, within ABZR87_RS19565 at 761.881 kb on + strand at 761.882 kb on - strand at 762.064 kb on + strand, within ABZR87_RS19570 at 762.064 kb on + strand, within ABZR87_RS19570 at 762.064 kb on + strand, within ABZR87_RS19570 at 762.065 kb on - strand, within ABZR87_RS19570 at 762.065 kb on - strand, within ABZR87_RS19570 at 762.065 kb on - strand, within ABZR87_RS19570 at 762.065 kb on - strand, within ABZR87_RS19570 at 762.096 kb on + strand, within ABZR87_RS19570 at 762.096 kb on + strand, within ABZR87_RS19570 at 762.097 kb on - strand, within ABZR87_RS19570 at 762.097 kb on - strand, within ABZR87_RS19570 at 762.097 kb on - strand, within ABZR87_RS19570 at 762.097 kb on - strand, within ABZR87_RS19570 at 762.238 kb on - strand, within ABZR87_RS19570 at 762.305 kb on - strand, within ABZR87_RS19570
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 4; outgrowth in LB remove 759,804 + ABZR87_RS19555 0.34 +0.9 759,805 - ABZR87_RS19555 0.34 +3.5 759,842 + ABZR87_RS19555 0.38 +0.8 759,842 + ABZR87_RS19555 0.38 +1.2 759,843 - ABZR87_RS19555 0.38 +3.2 759,843 - ABZR87_RS19555 0.38 +2.9 759,940 - ABZR87_RS19555 0.48 +2.4 759,950 + ABZR87_RS19555 0.49 +1.1 759,951 - ABZR87_RS19555 0.49 +3.2 759,951 - ABZR87_RS19555 0.49 +3.0 759,951 - ABZR87_RS19555 0.49 +2.6 759,951 - ABZR87_RS19555 0.49 +3.1 759,951 - ABZR87_RS19555 0.49 +3.4 759,951 - ABZR87_RS19555 0.49 +3.2 760,181 + ABZR87_RS19555 0.72 +1.0 760,223 + ABZR87_RS19555 0.76 +2.0 760,224 - ABZR87_RS19555 0.76 +2.3 760,224 - ABZR87_RS19555 0.76 +2.7 760,442 + +1.0 760,442 + -0.9 760,678 + ABZR87_RS19560 0.23 +2.5 760,678 + ABZR87_RS19560 0.23 +2.0 760,678 + ABZR87_RS19560 0.23 +2.7 760,679 - ABZR87_RS19560 0.24 +3.2 760,679 - ABZR87_RS19560 0.24 +4.3 760,679 - ABZR87_RS19560 0.24 +3.3 760,681 + ABZR87_RS19560 0.24 +3.1 760,681 + ABZR87_RS19560 0.24 +2.3 760,681 + ABZR87_RS19560 0.24 +1.7 760,682 - ABZR87_RS19560 0.24 +3.3 760,682 - ABZR87_RS19560 0.24 +3.8 760,699 - ABZR87_RS19560 0.26 +2.1 760,709 - ABZR87_RS19560 0.27 +3.1 760,709 - ABZR87_RS19560 0.27 +3.5 760,721 - ABZR87_RS19560 0.28 +2.9 761,568 + ABZR87_RS19565 0.54 +3.8 761,568 + ABZR87_RS19565 0.54 +2.1 761,568 + ABZR87_RS19565 0.54 +1.7 761,568 + ABZR87_RS19565 0.54 +1.8 761,569 - ABZR87_RS19565 0.54 +3.7 761,569 - ABZR87_RS19565 0.54 +3.3 761,569 - ABZR87_RS19565 0.54 +3.5 761,616 + ABZR87_RS19565 0.68 +2.0 761,881 + +2.0 761,882 - +2.3 762,064 + ABZR87_RS19570 0.15 +3.7 762,064 + ABZR87_RS19570 0.15 +1.7 762,064 + ABZR87_RS19570 0.15 +0.9 762,065 - ABZR87_RS19570 0.15 +2.7 762,065 - ABZR87_RS19570 0.15 +2.2 762,065 - ABZR87_RS19570 0.15 +2.4 762,065 - ABZR87_RS19570 0.15 +3.0 762,096 + ABZR87_RS19570 0.17 +0.8 762,096 + ABZR87_RS19570 0.17 +1.7 762,097 - ABZR87_RS19570 0.17 +1.8 762,097 - ABZR87_RS19570 0.17 +3.6 762,097 - ABZR87_RS19570 0.17 +0.9 762,097 - ABZR87_RS19570 0.17 +2.2 762,238 - ABZR87_RS19570 0.26 +3.3 762,305 - ABZR87_RS19570 0.30 +3.0
Or see this region's nucleotide sequence