Experiment: rhizosphere sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19295 and ABZR87_RS19300 are separated by 1 nucleotides ABZR87_RS19300 and ABZR87_RS19305 overlap by 4 nucleotides ABZR87_RS19305 and ABZR87_RS19310 overlap by 19 nucleotides ABZR87_RS19310 and ABZR87_RS19315 overlap by 4 nucleotides
ABZR87_RS19295: ABZR87_RS19295 - hypothetical protein, at 690,532 to 691,113
_RS19295
ABZR87_RS19300: ABZR87_RS19300 - type III secretion system inner membrane ring lipoprotein SctJ, at 691,115 to 691,882
_RS19300
ABZR87_RS19305: ABZR87_RS19305 - SctK family type III secretion system sorting platform protein, at 691,879 to 692,541
_RS19305
ABZR87_RS19310: ABZR87_RS19310 - type III secretion system stator protein SctL, at 692,523 to 693,128
_RS19310
ABZR87_RS19315: ABZR87_RS19315 - FliI/YscN family ATPase, at 693,125 to 694,483
_RS19315
Position (kb) 691
692
693 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 690.896 kb on - strand, within ABZR87_RS19295 at 690.919 kb on + strand, within ABZR87_RS19295 at 690.919 kb on + strand, within ABZR87_RS19295 at 691.013 kb on - strand, within ABZR87_RS19295 at 691.013 kb on - strand, within ABZR87_RS19295 at 691.040 kb on - strand, within ABZR87_RS19295 at 691.188 kb on - strand at 691.188 kb on - strand at 691.188 kb on - strand at 691.446 kb on - strand, within ABZR87_RS19300 at 691.451 kb on + strand, within ABZR87_RS19300 at 691.452 kb on - strand, within ABZR87_RS19300 at 691.452 kb on - strand, within ABZR87_RS19300 at 691.515 kb on + strand, within ABZR87_RS19300 at 691.516 kb on - strand, within ABZR87_RS19300 at 691.516 kb on - strand, within ABZR87_RS19300 at 691.516 kb on - strand, within ABZR87_RS19300 at 691.516 kb on - strand, within ABZR87_RS19300 at 691.580 kb on + strand, within ABZR87_RS19300 at 691.580 kb on + strand, within ABZR87_RS19300 at 691.580 kb on + strand, within ABZR87_RS19300 at 691.667 kb on + strand, within ABZR87_RS19300 at 691.667 kb on + strand, within ABZR87_RS19300 at 691.668 kb on - strand, within ABZR87_RS19300 at 691.668 kb on - strand, within ABZR87_RS19300 at 691.677 kb on + strand, within ABZR87_RS19300 at 691.678 kb on - strand, within ABZR87_RS19300 at 691.840 kb on - strand at 691.840 kb on - strand at 691.939 kb on + strand at 691.939 kb on + strand at 691.940 kb on - strand at 691.942 kb on - strand at 691.942 kb on - strand at 692.072 kb on - strand, within ABZR87_RS19305 at 692.193 kb on + strand, within ABZR87_RS19305 at 692.446 kb on + strand, within ABZR87_RS19305 at 692.543 kb on + strand at 692.598 kb on + strand, within ABZR87_RS19310 at 692.868 kb on + strand, within ABZR87_RS19310 at 692.868 kb on + strand, within ABZR87_RS19310 at 692.868 kb on + strand, within ABZR87_RS19310 at 692.868 kb on + strand, within ABZR87_RS19310 at 692.869 kb on - strand, within ABZR87_RS19310 at 693.222 kb on + strand at 693.223 kb on - strand at 693.223 kb on - strand at 693.336 kb on - strand, within ABZR87_RS19315 at 693.336 kb on - strand, within ABZR87_RS19315
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 4; outgrowth in LB remove 690,896 - ABZR87_RS19295 0.63 -1.3 690,919 + ABZR87_RS19295 0.66 -0.7 690,919 + ABZR87_RS19295 0.66 +0.5 691,013 - ABZR87_RS19295 0.83 -0.8 691,013 - ABZR87_RS19295 0.83 -0.5 691,040 - ABZR87_RS19295 0.87 +0.1 691,188 - +0.5 691,188 - +0.2 691,188 - -0.7 691,446 - ABZR87_RS19300 0.43 -0.2 691,451 + ABZR87_RS19300 0.44 +1.2 691,452 - ABZR87_RS19300 0.44 +0.5 691,452 - ABZR87_RS19300 0.44 -0.4 691,515 + ABZR87_RS19300 0.52 +2.0 691,516 - ABZR87_RS19300 0.52 -2.9 691,516 - ABZR87_RS19300 0.52 -0.8 691,516 - ABZR87_RS19300 0.52 -0.0 691,516 - ABZR87_RS19300 0.52 -0.2 691,580 + ABZR87_RS19300 0.61 +0.4 691,580 + ABZR87_RS19300 0.61 -0.1 691,580 + ABZR87_RS19300 0.61 -0.6 691,667 + ABZR87_RS19300 0.72 -0.6 691,667 + ABZR87_RS19300 0.72 +0.7 691,668 - ABZR87_RS19300 0.72 +0.1 691,668 - ABZR87_RS19300 0.72 -0.2 691,677 + ABZR87_RS19300 0.73 -0.9 691,678 - ABZR87_RS19300 0.73 -1.0 691,840 - -0.0 691,840 - -0.8 691,939 + +1.1 691,939 + +0.4 691,940 - +0.5 691,942 - +0.4 691,942 - -0.2 692,072 - ABZR87_RS19305 0.29 -1.7 692,193 + ABZR87_RS19305 0.47 -1.6 692,446 + ABZR87_RS19305 0.86 -0.0 692,543 + +1.4 692,598 + ABZR87_RS19310 0.12 -2.3 692,868 + ABZR87_RS19310 0.57 -0.9 692,868 + ABZR87_RS19310 0.57 +0.8 692,868 + ABZR87_RS19310 0.57 +1.0 692,868 + ABZR87_RS19310 0.57 +0.7 692,869 - ABZR87_RS19310 0.57 -0.2 693,222 + +1.8 693,223 - +0.8 693,223 - +2.8 693,336 - ABZR87_RS19315 0.16 -0.5 693,336 - ABZR87_RS19315 0.16 +0.9
Or see this region's nucleotide sequence