Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18830

Experiment: rhizosphere sample 4; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18825 and ABZR87_RS18830 are separated by 7 nucleotidesABZR87_RS18830 and ABZR87_RS18835 are separated by 86 nucleotides ABZR87_RS18825: ABZR87_RS18825 - LuxR family transcriptional regulator, at 576,904 to 578,022 _RS18825 ABZR87_RS18830: ABZR87_RS18830 - NIPSNAP family protein, at 578,030 to 578,335 _RS18830 ABZR87_RS18835: ABZR87_RS18835 - cytochrome d ubiquinol oxidase subunit II, at 578,422 to 579,453 _RS18835 Position (kb) 578 579Strain fitness (log2 ratio) -2 -1 0 1 2 3at 577.060 kb on + strand, within ABZR87_RS18825at 577.060 kb on + strand, within ABZR87_RS18825at 577.060 kb on + strand, within ABZR87_RS18825at 577.061 kb on - strand, within ABZR87_RS18825at 577.061 kb on - strand, within ABZR87_RS18825at 577.108 kb on + strand, within ABZR87_RS18825at 577.108 kb on + strand, within ABZR87_RS18825at 577.109 kb on - strand, within ABZR87_RS18825at 577.109 kb on - strand, within ABZR87_RS18825at 577.112 kb on - strand, within ABZR87_RS18825at 577.112 kb on - strand, within ABZR87_RS18825at 577.138 kb on + strand, within ABZR87_RS18825at 577.138 kb on + strand, within ABZR87_RS18825at 577.149 kb on + strand, within ABZR87_RS18825at 577.149 kb on + strand, within ABZR87_RS18825at 577.149 kb on + strand, within ABZR87_RS18825at 577.149 kb on + strand, within ABZR87_RS18825at 577.149 kb on + strand, within ABZR87_RS18825at 577.149 kb on + strand, within ABZR87_RS18825at 577.149 kb on + strand, within ABZR87_RS18825at 577.150 kb on - strand, within ABZR87_RS18825at 577.183 kb on + strand, within ABZR87_RS18825at 577.183 kb on + strand, within ABZR87_RS18825at 577.183 kb on + strand, within ABZR87_RS18825at 577.184 kb on - strand, within ABZR87_RS18825at 577.184 kb on - strand, within ABZR87_RS18825at 577.184 kb on - strand, within ABZR87_RS18825at 577.198 kb on + strand, within ABZR87_RS18825at 577.198 kb on + strand, within ABZR87_RS18825at 577.198 kb on + strand, within ABZR87_RS18825at 577.198 kb on + strand, within ABZR87_RS18825at 577.198 kb on + strand, within ABZR87_RS18825at 577.198 kb on + strand, within ABZR87_RS18825at 577.198 kb on + strand, within ABZR87_RS18825at 577.198 kb on + strand, within ABZR87_RS18825at 577.199 kb on - strand, within ABZR87_RS18825at 577.199 kb on - strand, within ABZR87_RS18825at 577.199 kb on - strand, within ABZR87_RS18825at 577.199 kb on - strand, within ABZR87_RS18825at 577.199 kb on - strand, within ABZR87_RS18825at 577.219 kb on + strand, within ABZR87_RS18825at 577.220 kb on - strand, within ABZR87_RS18825at 577.220 kb on - strand, within ABZR87_RS18825at 577.928 kb on + strandat 577.928 kb on + strandat 577.928 kb on + strandat 578.039 kb on + strandat 578.040 kb on - strandat 578.040 kb on - strandat 578.065 kb on - strand, within ABZR87_RS18830at 578.094 kb on + strand, within ABZR87_RS18830at 578.142 kb on + strand, within ABZR87_RS18830at 578.142 kb on + strand, within ABZR87_RS18830at 578.151 kb on + strand, within ABZR87_RS18830at 578.220 kb on + strand, within ABZR87_RS18830at 578.220 kb on + strand, within ABZR87_RS18830at 578.221 kb on - strand, within ABZR87_RS18830at 578.275 kb on - strand, within ABZR87_RS18830at 578.275 kb on - strand, within ABZR87_RS18830at 578.313 kb on + strandat 578.313 kb on + strandat 578.314 kb on - strandat 578.314 kb on - strandat 578.369 kb on + strandat 578.370 kb on - strandat 578.370 kb on - strandat 578.421 kb on - strandat 578.426 kb on + strandat 578.426 kb on + strandat 578.427 kb on - strandat 578.427 kb on - strandat 578.427 kb on - strandat 578.427 kb on - strandat 578.427 kb on - strandat 578.429 kb on + strandat 578.465 kb on + strandat 578.466 kb on - strandat 578.466 kb on - strandat 578.471 kb on + strandat 578.471 kb on + strandat 578.472 kb on - strandat 578.472 kb on - strandat 578.472 kb on - strandat 578.481 kb on - strandat 578.600 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.022 kb on + strand, within ABZR87_RS18835at 579.023 kb on - strand, within ABZR87_RS18835at 579.023 kb on - strand, within ABZR87_RS18835at 579.071 kb on + strand, within ABZR87_RS18835at 579.071 kb on + strand, within ABZR87_RS18835at 579.071 kb on + strand, within ABZR87_RS18835at 579.072 kb on - strand, within ABZR87_RS18835at 579.072 kb on - strand, within ABZR87_RS18835at 579.072 kb on - strand, within ABZR87_RS18835at 579.072 kb on - strand, within ABZR87_RS18835at 579.072 kb on - strand, within ABZR87_RS18835at 579.179 kb on + strand, within ABZR87_RS18835at 579.180 kb on - strand, within ABZR87_RS18835at 579.180 kb on - strand, within ABZR87_RS18835at 579.180 kb on - strand, within ABZR87_RS18835

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 4; outgrowth in LB
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577,060 + ABZR87_RS18825 0.14 -1.1
577,060 + ABZR87_RS18825 0.14 -0.0
577,060 + ABZR87_RS18825 0.14 -2.3
577,061 - ABZR87_RS18825 0.14 +0.6
577,061 - ABZR87_RS18825 0.14 -2.0
577,108 + ABZR87_RS18825 0.18 -0.3
577,108 + ABZR87_RS18825 0.18 -0.3
577,109 - ABZR87_RS18825 0.18 -0.4
577,109 - ABZR87_RS18825 0.18 +0.1
577,112 - ABZR87_RS18825 0.19 -0.8
577,112 - ABZR87_RS18825 0.19 -1.9
577,138 + ABZR87_RS18825 0.21 +0.4
577,138 + ABZR87_RS18825 0.21 -0.1
577,149 + ABZR87_RS18825 0.22 -0.4
577,149 + ABZR87_RS18825 0.22 -0.4
577,149 + ABZR87_RS18825 0.22 -0.1
577,149 + ABZR87_RS18825 0.22 +0.1
577,149 + ABZR87_RS18825 0.22 +0.4
577,149 + ABZR87_RS18825 0.22 -0.1
577,149 + ABZR87_RS18825 0.22 -0.4
577,150 - ABZR87_RS18825 0.22 -1.4
577,183 + ABZR87_RS18825 0.25 -0.2
577,183 + ABZR87_RS18825 0.25 -1.1
577,183 + ABZR87_RS18825 0.25 +0.7
577,184 - ABZR87_RS18825 0.25 +0.3
577,184 - ABZR87_RS18825 0.25 +1.1
577,184 - ABZR87_RS18825 0.25 +0.5
577,198 + ABZR87_RS18825 0.26 +0.2
577,198 + ABZR87_RS18825 0.26 +0.3
577,198 + ABZR87_RS18825 0.26 +0.4
577,198 + ABZR87_RS18825 0.26 +1.0
577,198 + ABZR87_RS18825 0.26 -0.1
577,198 + ABZR87_RS18825 0.26 +0.5
577,198 + ABZR87_RS18825 0.26 +0.5
577,198 + ABZR87_RS18825 0.26 -1.0
577,199 - ABZR87_RS18825 0.26 -0.7
577,199 - ABZR87_RS18825 0.26 -0.1
577,199 - ABZR87_RS18825 0.26 -1.7
577,199 - ABZR87_RS18825 0.26 -0.1
577,199 - ABZR87_RS18825 0.26 +0.9
577,219 + ABZR87_RS18825 0.28 +1.6
577,220 - ABZR87_RS18825 0.28 -1.0
577,220 - ABZR87_RS18825 0.28 +1.2
577,928 + +0.9
577,928 + -0.2
577,928 + -1.7
578,039 + +3.6
578,040 - -0.2
578,040 - -0.6
578,065 - ABZR87_RS18830 0.11 +0.7
578,094 + ABZR87_RS18830 0.21 +0.7
578,142 + ABZR87_RS18830 0.37 -0.1
578,142 + ABZR87_RS18830 0.37 -1.3
578,151 + ABZR87_RS18830 0.40 +0.6
578,220 + ABZR87_RS18830 0.62 +1.9
578,220 + ABZR87_RS18830 0.62 +1.2
578,221 - ABZR87_RS18830 0.62 -0.6
578,275 - ABZR87_RS18830 0.80 -1.3
578,275 - ABZR87_RS18830 0.80 -0.2
578,313 + -1.0
578,313 + +0.3
578,314 - +0.1
578,314 - +0.2
578,369 + -0.2
578,370 - +0.2
578,370 - -0.4
578,421 - +0.4
578,426 + -0.9
578,426 + -0.2
578,427 - +0.1
578,427 - -0.6
578,427 - -0.1
578,427 - +0.1
578,427 - -0.2
578,429 + +0.5
578,465 + +0.4
578,466 - +1.8
578,466 - -0.7
578,471 + +0.5
578,471 + +0.7
578,472 - -0.6
578,472 - +0.5
578,472 - +0.1
578,481 - -0.4
578,600 + ABZR87_RS18835 0.17 +0.6
579,020 + ABZR87_RS18835 0.58 -2.2
579,020 + ABZR87_RS18835 0.58 -0.1
579,020 + ABZR87_RS18835 0.58 -0.2
579,020 + ABZR87_RS18835 0.58 +0.8
579,020 + ABZR87_RS18835 0.58 +0.4
579,020 + ABZR87_RS18835 0.58 -1.6
579,020 + ABZR87_RS18835 0.58 +0.2
579,020 + ABZR87_RS18835 0.58 +0.3
579,020 + ABZR87_RS18835 0.58 -0.6
579,021 - ABZR87_RS18835 0.58 -2.4
579,021 - ABZR87_RS18835 0.58 -0.0
579,021 - ABZR87_RS18835 0.58 +2.9
579,021 - ABZR87_RS18835 0.58 +0.9
579,021 - ABZR87_RS18835 0.58 -0.5
579,021 - ABZR87_RS18835 0.58 +0.1
579,021 - ABZR87_RS18835 0.58 +0.4
579,021 - ABZR87_RS18835 0.58 +1.0
579,021 - ABZR87_RS18835 0.58 -0.1
579,022 + ABZR87_RS18835 0.58 +1.2
579,023 - ABZR87_RS18835 0.58 -1.3
579,023 - ABZR87_RS18835 0.58 +1.4
579,071 + ABZR87_RS18835 0.63 +0.0
579,071 + ABZR87_RS18835 0.63 +0.8
579,071 + ABZR87_RS18835 0.63 +0.3
579,072 - ABZR87_RS18835 0.63 -1.0
579,072 - ABZR87_RS18835 0.63 +0.4
579,072 - ABZR87_RS18835 0.63 -0.5
579,072 - ABZR87_RS18835 0.63 -1.4
579,072 - ABZR87_RS18835 0.63 -0.6
579,179 + ABZR87_RS18835 0.73 +0.1
579,180 - ABZR87_RS18835 0.73 +0.2
579,180 - ABZR87_RS18835 0.73 -2.1
579,180 - ABZR87_RS18835 0.73 -1.5

Or see this region's nucleotide sequence