Experiment: rhizosphere sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18535 and ABZR87_RS18540 are separated by 157 nucleotides ABZR87_RS18540 and ABZR87_RS18545 are separated by 7 nucleotides
ABZR87_RS18535: ABZR87_RS18535 - PLP-dependent aminotransferase family protein, at 513,066 to 514,619
_RS18535
ABZR87_RS18540: ABZR87_RS18540 - branched-chain amino acid aminotransferase, at 514,777 to 515,877
_RS18540
ABZR87_RS18545: ABZR87_RS18545 - alpha/beta hydrolase, at 515,885 to 516,697
_RS18545
Position (kb) 514
515
516 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 513.985 kb on - strand, within ABZR87_RS18535 at 514.002 kb on + strand, within ABZR87_RS18535 at 514.060 kb on - strand, within ABZR87_RS18535 at 514.060 kb on - strand, within ABZR87_RS18535 at 514.107 kb on + strand, within ABZR87_RS18535 at 514.108 kb on - strand, within ABZR87_RS18535 at 514.186 kb on + strand, within ABZR87_RS18535 at 514.187 kb on - strand, within ABZR87_RS18535 at 514.187 kb on - strand, within ABZR87_RS18535 at 514.187 kb on - strand, within ABZR87_RS18535 at 514.258 kb on - strand, within ABZR87_RS18535 at 514.453 kb on - strand, within ABZR87_RS18535 at 514.684 kb on + strand at 514.685 kb on + strand at 514.685 kb on + strand at 514.685 kb on + strand at 514.685 kb on + strand at 514.685 kb on + strand at 514.685 kb on + strand at 514.685 kb on + strand at 514.685 kb on + strand at 514.685 kb on + strand at 514.686 kb on - strand at 514.686 kb on - strand at 514.686 kb on - strand at 514.686 kb on - strand at 514.686 kb on - strand at 514.686 kb on - strand at 514.686 kb on - strand at 514.686 kb on - strand at 514.686 kb on - strand at 514.686 kb on - strand at 514.686 kb on - strand at 514.697 kb on + strand at 514.698 kb on - strand at 514.698 kb on - strand at 514.777 kb on - strand at 514.777 kb on - strand at 514.777 kb on - strand at 514.777 kb on - strand at 514.880 kb on + strand at 514.910 kb on - strand, within ABZR87_RS18540 at 514.994 kb on - strand, within ABZR87_RS18540 at 514.994 kb on - strand, within ABZR87_RS18540 at 515.026 kb on + strand, within ABZR87_RS18540 at 515.026 kb on + strand, within ABZR87_RS18540 at 515.206 kb on + strand, within ABZR87_RS18540 at 515.206 kb on + strand, within ABZR87_RS18540 at 515.267 kb on - strand, within ABZR87_RS18540 at 515.302 kb on + strand, within ABZR87_RS18540 at 515.302 kb on + strand, within ABZR87_RS18540 at 515.303 kb on - strand, within ABZR87_RS18540 at 515.303 kb on - strand, within ABZR87_RS18540 at 515.303 kb on - strand, within ABZR87_RS18540 at 515.353 kb on + strand, within ABZR87_RS18540 at 515.354 kb on - strand, within ABZR87_RS18540 at 515.354 kb on - strand, within ABZR87_RS18540 at 515.354 kb on - strand, within ABZR87_RS18540 at 515.354 kb on - strand, within ABZR87_RS18540 at 515.404 kb on + strand, within ABZR87_RS18540 at 515.404 kb on + strand, within ABZR87_RS18540 at 515.404 kb on + strand, within ABZR87_RS18540 at 515.404 kb on + strand, within ABZR87_RS18540 at 515.404 kb on + strand, within ABZR87_RS18540 at 515.404 kb on + strand, within ABZR87_RS18540 at 515.404 kb on + strand, within ABZR87_RS18540 at 515.405 kb on - strand, within ABZR87_RS18540 at 515.405 kb on - strand, within ABZR87_RS18540 at 515.405 kb on - strand, within ABZR87_RS18540 at 515.405 kb on - strand, within ABZR87_RS18540 at 515.405 kb on - strand, within ABZR87_RS18540 at 515.405 kb on - strand, within ABZR87_RS18540 at 515.644 kb on + strand, within ABZR87_RS18540 at 515.957 kb on + strand at 515.958 kb on - strand at 515.958 kb on - strand at 515.958 kb on - strand at 516.098 kb on + strand, within ABZR87_RS18545 at 516.098 kb on + strand, within ABZR87_RS18545 at 516.099 kb on - strand, within ABZR87_RS18545 at 516.099 kb on - strand, within ABZR87_RS18545 at 516.099 kb on - strand, within ABZR87_RS18545 at 516.099 kb on - strand, within ABZR87_RS18545 at 516.131 kb on + strand, within ABZR87_RS18545 at 516.173 kb on + strand, within ABZR87_RS18545 at 516.276 kb on - strand, within ABZR87_RS18545 at 516.545 kb on + strand, within ABZR87_RS18545 at 516.545 kb on + strand, within ABZR87_RS18545 at 516.725 kb on + strand at 516.726 kb on - strand at 516.874 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 4; outgrowth in LB remove 513,985 - ABZR87_RS18535 0.59 -0.3 514,002 + ABZR87_RS18535 0.60 -0.1 514,060 - ABZR87_RS18535 0.64 -0.5 514,060 - ABZR87_RS18535 0.64 -0.5 514,107 + ABZR87_RS18535 0.67 -0.4 514,108 - ABZR87_RS18535 0.67 +0.2 514,186 + ABZR87_RS18535 0.72 +0.5 514,187 - ABZR87_RS18535 0.72 +0.6 514,187 - ABZR87_RS18535 0.72 -1.5 514,187 - ABZR87_RS18535 0.72 -1.1 514,258 - ABZR87_RS18535 0.77 -0.6 514,453 - ABZR87_RS18535 0.89 -0.7 514,684 + +2.9 514,685 + +0.3 514,685 + -0.6 514,685 + -1.2 514,685 + -1.7 514,685 + +0.0 514,685 + -0.5 514,685 + +1.5 514,685 + -0.5 514,685 + +0.6 514,686 - -0.4 514,686 - -0.3 514,686 - +0.5 514,686 - +0.5 514,686 - +0.7 514,686 - -0.4 514,686 - +1.2 514,686 - +0.1 514,686 - +0.3 514,686 - +0.1 514,686 - -0.8 514,697 + -2.9 514,698 - -1.4 514,698 - +0.1 514,777 - -0.3 514,777 - -0.0 514,777 - -0.9 514,777 - -0.8 514,880 + -1.4 514,910 - ABZR87_RS18540 0.12 +0.3 514,994 - ABZR87_RS18540 0.20 -0.5 514,994 - ABZR87_RS18540 0.20 -0.5 515,026 + ABZR87_RS18540 0.23 +0.3 515,026 + ABZR87_RS18540 0.23 -0.3 515,206 + ABZR87_RS18540 0.39 -0.3 515,206 + ABZR87_RS18540 0.39 -0.9 515,267 - ABZR87_RS18540 0.45 +1.6 515,302 + ABZR87_RS18540 0.48 -0.3 515,302 + ABZR87_RS18540 0.48 -1.5 515,303 - ABZR87_RS18540 0.48 -1.8 515,303 - ABZR87_RS18540 0.48 +0.3 515,303 - ABZR87_RS18540 0.48 -0.5 515,353 + ABZR87_RS18540 0.52 -0.9 515,354 - ABZR87_RS18540 0.52 -0.2 515,354 - ABZR87_RS18540 0.52 -0.8 515,354 - ABZR87_RS18540 0.52 +0.0 515,354 - ABZR87_RS18540 0.52 +0.6 515,404 + ABZR87_RS18540 0.57 -0.6 515,404 + ABZR87_RS18540 0.57 -0.1 515,404 + ABZR87_RS18540 0.57 -1.4 515,404 + ABZR87_RS18540 0.57 -0.2 515,404 + ABZR87_RS18540 0.57 -0.0 515,404 + ABZR87_RS18540 0.57 +0.1 515,404 + ABZR87_RS18540 0.57 -0.0 515,405 - ABZR87_RS18540 0.57 +0.7 515,405 - ABZR87_RS18540 0.57 -1.0 515,405 - ABZR87_RS18540 0.57 -0.3 515,405 - ABZR87_RS18540 0.57 -0.8 515,405 - ABZR87_RS18540 0.57 -0.3 515,405 - ABZR87_RS18540 0.57 -0.6 515,644 + ABZR87_RS18540 0.79 -1.1 515,957 + +0.4 515,958 - -1.9 515,958 - +0.2 515,958 - -1.2 516,098 + ABZR87_RS18545 0.26 +1.1 516,098 + ABZR87_RS18545 0.26 -0.4 516,099 - ABZR87_RS18545 0.26 -0.1 516,099 - ABZR87_RS18545 0.26 +0.6 516,099 - ABZR87_RS18545 0.26 -0.3 516,099 - ABZR87_RS18545 0.26 +0.0 516,131 + ABZR87_RS18545 0.30 +2.6 516,173 + ABZR87_RS18545 0.35 -0.8 516,276 - ABZR87_RS18545 0.48 -0.3 516,545 + ABZR87_RS18545 0.81 -1.8 516,545 + ABZR87_RS18545 0.81 +0.0 516,725 + +0.3 516,726 - -0.3 516,874 + +0.9
Or see this region's nucleotide sequence