Experiment: rhizosphere sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18245 and ABZR87_RS18250 are separated by 139 nucleotides ABZR87_RS18250 and ABZR87_RS18255 are separated by 85 nucleotides ABZR87_RS18255 and ABZR87_RS18260 are separated by 21 nucleotides
ABZR87_RS18245: ABZR87_RS18245 - fumarylacetoacetate hydrolase family protein, at 463,736 to 464,920
_RS18245
ABZR87_RS18250: ABZR87_RS18250 - IclR family transcriptional regulator, at 465,060 to 465,815
_RS18250
ABZR87_RS18255: ABZR87_RS18255 - LacI family DNA-binding transcriptional regulator, at 465,901 to 466,917
_RS18255
ABZR87_RS18260: ABZR87_RS18260 - IlvD/Edd family dehydratase, at 466,939 to 468,723
_RS18260
Position (kb) 465
466
467 Strain fitness (log2 ratio) -2
-1
0
1 at 464.902 kb on - strand at 464.935 kb on + strand at 465.072 kb on + strand at 465.072 kb on + strand at 465.073 kb on - strand at 465.073 kb on - strand at 465.115 kb on + strand at 465.189 kb on + strand, within ABZR87_RS18250 at 465.190 kb on - strand, within ABZR87_RS18250 at 465.286 kb on - strand, within ABZR87_RS18250 at 465.286 kb on - strand, within ABZR87_RS18250 at 465.396 kb on + strand, within ABZR87_RS18250 at 465.397 kb on - strand, within ABZR87_RS18250 at 465.397 kb on - strand, within ABZR87_RS18250 at 465.813 kb on + strand at 465.814 kb on - strand at 466.510 kb on + strand, within ABZR87_RS18255 at 466.511 kb on - strand, within ABZR87_RS18255 at 466.539 kb on - strand, within ABZR87_RS18255 at 466.929 kb on + strand at 466.930 kb on + strand at 466.930 kb on + strand at 466.930 kb on + strand at 466.986 kb on - strand at 467.430 kb on - strand, within ABZR87_RS18260 at 467.498 kb on + strand, within ABZR87_RS18260 at 467.499 kb on - strand, within ABZR87_RS18260 at 467.521 kb on + strand, within ABZR87_RS18260 at 467.521 kb on + strand, within ABZR87_RS18260 at 467.522 kb on - strand, within ABZR87_RS18260 at 467.680 kb on - strand, within ABZR87_RS18260 at 467.768 kb on + strand, within ABZR87_RS18260
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 4; outgrowth in LB remove 464,902 - -0.5 464,935 + -0.6 465,072 + -1.3 465,072 + +0.7 465,073 - +0.2 465,073 - +0.0 465,115 + +0.0 465,189 + ABZR87_RS18250 0.17 -0.2 465,190 - ABZR87_RS18250 0.17 +0.4 465,286 - ABZR87_RS18250 0.30 -1.1 465,286 - ABZR87_RS18250 0.30 +1.0 465,396 + ABZR87_RS18250 0.44 +0.1 465,397 - ABZR87_RS18250 0.45 +0.7 465,397 - ABZR87_RS18250 0.45 -0.7 465,813 + -1.4 465,814 - +0.6 466,510 + ABZR87_RS18255 0.60 +1.0 466,511 - ABZR87_RS18255 0.60 +0.3 466,539 - ABZR87_RS18255 0.63 +0.6 466,929 + -0.3 466,930 + -1.8 466,930 + -1.0 466,930 + -0.1 466,986 - +0.6 467,430 - ABZR87_RS18260 0.28 -0.3 467,498 + ABZR87_RS18260 0.31 +1.2 467,499 - ABZR87_RS18260 0.31 +0.5 467,521 + ABZR87_RS18260 0.33 +0.2 467,521 + ABZR87_RS18260 0.33 +0.3 467,522 - ABZR87_RS18260 0.33 +0.0 467,680 - ABZR87_RS18260 0.42 -0.8 467,768 + ABZR87_RS18260 0.46 -0.1
Or see this region's nucleotide sequence