Experiment: rhizosphere sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18235 and ABZR87_RS18240 overlap by 4 nucleotides ABZR87_RS18240 and ABZR87_RS18245 overlap by 10 nucleotides ABZR87_RS18245 and ABZR87_RS18250 are separated by 139 nucleotides ABZR87_RS18250 and ABZR87_RS18255 are separated by 85 nucleotides
ABZR87_RS18235: ABZR87_RS18235 - SDR family oxidoreductase, at 462,076 to 462,843
_RS18235
ABZR87_RS18240: ABZR87_RS18240 - SMP-30/gluconolactonase/LRE family protein, at 462,840 to 463,745
_RS18240
ABZR87_RS18245: ABZR87_RS18245 - fumarylacetoacetate hydrolase family protein, at 463,736 to 464,920
_RS18245
ABZR87_RS18250: ABZR87_RS18250 - IclR family transcriptional regulator, at 465,060 to 465,815
_RS18250
ABZR87_RS18255: ABZR87_RS18255 - LacI family DNA-binding transcriptional regulator, at 465,901 to 466,917
_RS18255
Position (kb) 463
464
465 Strain fitness (log2 ratio) -2
-1
0
1
2 at 462.812 kb on - strand at 462.833 kb on - strand at 462.961 kb on - strand, within ABZR87_RS18240 at 462.966 kb on + strand, within ABZR87_RS18240 at 462.967 kb on - strand, within ABZR87_RS18240 at 463.158 kb on + strand, within ABZR87_RS18240 at 463.159 kb on - strand, within ABZR87_RS18240 at 463.230 kb on + strand, within ABZR87_RS18240 at 463.231 kb on - strand, within ABZR87_RS18240 at 463.276 kb on - strand, within ABZR87_RS18240 at 463.324 kb on - strand, within ABZR87_RS18240 at 463.353 kb on + strand, within ABZR87_RS18240 at 463.353 kb on + strand, within ABZR87_RS18240 at 463.353 kb on + strand, within ABZR87_RS18240 at 463.426 kb on - strand, within ABZR87_RS18240 at 463.665 kb on - strand at 463.777 kb on - strand at 463.777 kb on - strand at 464.032 kb on + strand, within ABZR87_RS18245 at 464.032 kb on + strand, within ABZR87_RS18245 at 464.033 kb on - strand, within ABZR87_RS18245 at 464.033 kb on - strand, within ABZR87_RS18245 at 464.033 kb on - strand, within ABZR87_RS18245 at 464.087 kb on + strand, within ABZR87_RS18245 at 464.087 kb on + strand, within ABZR87_RS18245 at 464.088 kb on - strand, within ABZR87_RS18245 at 464.088 kb on - strand, within ABZR87_RS18245 at 464.410 kb on - strand, within ABZR87_RS18245 at 464.410 kb on - strand, within ABZR87_RS18245 at 464.410 kb on - strand, within ABZR87_RS18245 at 464.813 kb on + strand at 464.902 kb on - strand at 464.935 kb on + strand at 465.072 kb on + strand at 465.072 kb on + strand at 465.073 kb on - strand at 465.073 kb on - strand at 465.115 kb on + strand at 465.189 kb on + strand, within ABZR87_RS18250 at 465.190 kb on - strand, within ABZR87_RS18250 at 465.286 kb on - strand, within ABZR87_RS18250 at 465.286 kb on - strand, within ABZR87_RS18250 at 465.396 kb on + strand, within ABZR87_RS18250 at 465.397 kb on - strand, within ABZR87_RS18250 at 465.397 kb on - strand, within ABZR87_RS18250 at 465.813 kb on + strand at 465.814 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 4; outgrowth in LB remove 462,812 - -0.9 462,833 - +0.2 462,961 - ABZR87_RS18240 0.13 -0.6 462,966 + ABZR87_RS18240 0.14 -0.9 462,967 - ABZR87_RS18240 0.14 +1.2 463,158 + ABZR87_RS18240 0.35 -0.1 463,159 - ABZR87_RS18240 0.35 -0.4 463,230 + ABZR87_RS18240 0.43 -0.3 463,231 - ABZR87_RS18240 0.43 -0.6 463,276 - ABZR87_RS18240 0.48 -1.0 463,324 - ABZR87_RS18240 0.53 +1.3 463,353 + ABZR87_RS18240 0.57 -1.2 463,353 + ABZR87_RS18240 0.57 -1.0 463,353 + ABZR87_RS18240 0.57 +0.2 463,426 - ABZR87_RS18240 0.65 -0.5 463,665 - -0.0 463,777 - -1.3 463,777 - -1.7 464,032 + ABZR87_RS18245 0.25 -0.2 464,032 + ABZR87_RS18245 0.25 -0.9 464,033 - ABZR87_RS18245 0.25 +0.4 464,033 - ABZR87_RS18245 0.25 -1.0 464,033 - ABZR87_RS18245 0.25 +0.9 464,087 + ABZR87_RS18245 0.30 +0.7 464,087 + ABZR87_RS18245 0.30 +0.1 464,088 - ABZR87_RS18245 0.30 -1.5 464,088 - ABZR87_RS18245 0.30 +1.8 464,410 - ABZR87_RS18245 0.57 -2.0 464,410 - ABZR87_RS18245 0.57 +0.8 464,410 - ABZR87_RS18245 0.57 +0.8 464,813 + -0.7 464,902 - -0.5 464,935 + -0.6 465,072 + -1.3 465,072 + +0.7 465,073 - +0.2 465,073 - +0.0 465,115 + +0.0 465,189 + ABZR87_RS18250 0.17 -0.2 465,190 - ABZR87_RS18250 0.17 +0.4 465,286 - ABZR87_RS18250 0.30 -1.1 465,286 - ABZR87_RS18250 0.30 +1.0 465,396 + ABZR87_RS18250 0.44 +0.1 465,397 - ABZR87_RS18250 0.45 +0.7 465,397 - ABZR87_RS18250 0.45 -0.7 465,813 + -1.4 465,814 - +0.6
Or see this region's nucleotide sequence