Experiment: rhizosphere sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17620 and ABZR87_RS17625 are separated by 112 nucleotides ABZR87_RS17625 and ABZR87_RS17630 are separated by 55 nucleotides
ABZR87_RS17620: ABZR87_RS17620 - LysR family transcriptional regulator, at 318,459 to 319,397
_RS17620
ABZR87_RS17625: ABZR87_RS17625 - SDR family oxidoreductase, at 319,510 to 320,271
_RS17625
ABZR87_RS17630: ABZR87_RS17630 - alpha/beta hydrolase, at 320,327 to 321,283
_RS17630
Position (kb) 319
320
321 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 318.513 kb on + strand at 318.513 kb on + strand at 318.514 kb on - strand at 318.514 kb on - strand at 318.592 kb on + strand, within ABZR87_RS17620 at 318.592 kb on + strand, within ABZR87_RS17620 at 318.592 kb on + strand, within ABZR87_RS17620 at 318.592 kb on + strand, within ABZR87_RS17620 at 318.593 kb on - strand, within ABZR87_RS17620 at 318.593 kb on - strand, within ABZR87_RS17620 at 318.593 kb on - strand, within ABZR87_RS17620 at 319.435 kb on - strand at 319.969 kb on + strand, within ABZR87_RS17625 at 319.969 kb on + strand, within ABZR87_RS17625 at 320.084 kb on - strand, within ABZR87_RS17625 at 320.084 kb on - strand, within ABZR87_RS17625 at 320.269 kb on + strand at 320.285 kb on - strand at 320.285 kb on - strand at 320.504 kb on + strand, within ABZR87_RS17630 at 320.505 kb on - strand, within ABZR87_RS17630 at 320.505 kb on - strand, within ABZR87_RS17630 at 320.505 kb on - strand, within ABZR87_RS17630 at 320.505 kb on - strand, within ABZR87_RS17630 at 320.562 kb on + strand, within ABZR87_RS17630 at 320.562 kb on + strand, within ABZR87_RS17630 at 320.563 kb on - strand, within ABZR87_RS17630 at 320.721 kb on - strand, within ABZR87_RS17630 at 320.721 kb on - strand, within ABZR87_RS17630 at 320.727 kb on - strand, within ABZR87_RS17630 at 320.727 kb on - strand, within ABZR87_RS17630 at 320.727 kb on - strand, within ABZR87_RS17630 at 320.843 kb on + strand, within ABZR87_RS17630 at 320.843 kb on + strand, within ABZR87_RS17630 at 320.843 kb on + strand, within ABZR87_RS17630 at 320.843 kb on + strand, within ABZR87_RS17630 at 320.844 kb on - strand, within ABZR87_RS17630 at 320.844 kb on - strand, within ABZR87_RS17630 at 320.888 kb on + strand, within ABZR87_RS17630 at 320.888 kb on + strand, within ABZR87_RS17630 at 320.888 kb on + strand, within ABZR87_RS17630 at 320.889 kb on - strand, within ABZR87_RS17630 at 320.889 kb on - strand, within ABZR87_RS17630 at 320.889 kb on - strand, within ABZR87_RS17630 at 320.960 kb on + strand, within ABZR87_RS17630 at 320.960 kb on + strand, within ABZR87_RS17630 at 320.961 kb on - strand, within ABZR87_RS17630 at 320.972 kb on + strand, within ABZR87_RS17630 at 321.008 kb on + strand, within ABZR87_RS17630 at 321.009 kb on - strand, within ABZR87_RS17630 at 321.084 kb on + strand, within ABZR87_RS17630 at 321.084 kb on + strand, within ABZR87_RS17630 at 321.085 kb on - strand, within ABZR87_RS17630
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 4; outgrowth in LB remove 318,513 + -0.1 318,513 + +0.6 318,514 - -0.6 318,514 - -0.3 318,592 + ABZR87_RS17620 0.14 -0.8 318,592 + ABZR87_RS17620 0.14 +2.3 318,592 + ABZR87_RS17620 0.14 +0.0 318,592 + ABZR87_RS17620 0.14 +0.4 318,593 - ABZR87_RS17620 0.14 +0.3 318,593 - ABZR87_RS17620 0.14 -0.3 318,593 - ABZR87_RS17620 0.14 +0.7 319,435 - -0.2 319,969 + ABZR87_RS17625 0.60 -0.2 319,969 + ABZR87_RS17625 0.60 +0.2 320,084 - ABZR87_RS17625 0.75 -1.6 320,084 - ABZR87_RS17625 0.75 -0.1 320,269 + -0.2 320,285 - -0.4 320,285 - -0.2 320,504 + ABZR87_RS17630 0.18 +0.7 320,505 - ABZR87_RS17630 0.19 +0.9 320,505 - ABZR87_RS17630 0.19 -0.8 320,505 - ABZR87_RS17630 0.19 -0.1 320,505 - ABZR87_RS17630 0.19 -3.3 320,562 + ABZR87_RS17630 0.25 -0.0 320,562 + ABZR87_RS17630 0.25 -1.5 320,563 - ABZR87_RS17630 0.25 -0.5 320,721 - ABZR87_RS17630 0.41 -0.4 320,721 - ABZR87_RS17630 0.41 +0.9 320,727 - ABZR87_RS17630 0.42 -0.6 320,727 - ABZR87_RS17630 0.42 -0.0 320,727 - ABZR87_RS17630 0.42 -0.7 320,843 + ABZR87_RS17630 0.54 +0.2 320,843 + ABZR87_RS17630 0.54 -0.1 320,843 + ABZR87_RS17630 0.54 +0.7 320,843 + ABZR87_RS17630 0.54 -0.8 320,844 - ABZR87_RS17630 0.54 -1.0 320,844 - ABZR87_RS17630 0.54 -0.3 320,888 + ABZR87_RS17630 0.59 -0.0 320,888 + ABZR87_RS17630 0.59 -0.3 320,888 + ABZR87_RS17630 0.59 +0.3 320,889 - ABZR87_RS17630 0.59 +0.8 320,889 - ABZR87_RS17630 0.59 -0.1 320,889 - ABZR87_RS17630 0.59 -0.2 320,960 + ABZR87_RS17630 0.66 -1.5 320,960 + ABZR87_RS17630 0.66 +0.3 320,961 - ABZR87_RS17630 0.66 -0.6 320,972 + ABZR87_RS17630 0.67 +0.3 321,008 + ABZR87_RS17630 0.71 -0.2 321,009 - ABZR87_RS17630 0.71 -0.1 321,084 + ABZR87_RS17630 0.79 -0.0 321,084 + ABZR87_RS17630 0.79 -1.8 321,085 - ABZR87_RS17630 0.79 -0.0
Or see this region's nucleotide sequence