Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15405

Experiment: rhizosphere sample 4; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS15400 and ABZR87_RS15405 are separated by 171 nucleotidesABZR87_RS15405 and ABZR87_RS15410 are separated by 94 nucleotides ABZR87_RS15400: ABZR87_RS15400 - helicase HerA-like C-terminal domain-containing protein, at 3,240,796 to 3,242,361 _RS15400 ABZR87_RS15405: ABZR87_RS15405 - YebC/PmpR family DNA-binding transcriptional regulator, at 3,242,533 to 3,243,258 _RS15405 ABZR87_RS15410: ABZR87_RS15410 - phosphoribosylamine--glycine ligase, at 3,243,353 to 3,244,621 _RS15410 Position (kb) 3242 3243 3244Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3241.662 kb on - strand, within ABZR87_RS15400at 3241.662 kb on - strand, within ABZR87_RS15400at 3241.662 kb on - strand, within ABZR87_RS15400at 3241.662 kb on - strand, within ABZR87_RS15400at 3241.839 kb on + strand, within ABZR87_RS15400at 3241.839 kb on + strand, within ABZR87_RS15400at 3241.840 kb on - strand, within ABZR87_RS15400at 3241.840 kb on - strand, within ABZR87_RS15400at 3241.840 kb on - strand, within ABZR87_RS15400at 3241.840 kb on - strand, within ABZR87_RS15400at 3241.848 kb on - strand, within ABZR87_RS15400at 3241.859 kb on + strand, within ABZR87_RS15400at 3241.860 kb on - strand, within ABZR87_RS15400at 3242.062 kb on + strand, within ABZR87_RS15400at 3242.062 kb on + strand, within ABZR87_RS15400at 3242.062 kb on + strand, within ABZR87_RS15400at 3242.062 kb on + strand, within ABZR87_RS15400at 3242.062 kb on + strand, within ABZR87_RS15400at 3242.062 kb on + strand, within ABZR87_RS15400at 3242.062 kb on + strand, within ABZR87_RS15400at 3242.062 kb on + strand, within ABZR87_RS15400at 3242.062 kb on + strand, within ABZR87_RS15400at 3242.062 kb on + strand, within ABZR87_RS15400at 3242.063 kb on - strand, within ABZR87_RS15400at 3242.063 kb on - strand, within ABZR87_RS15400at 3242.063 kb on - strand, within ABZR87_RS15400at 3242.063 kb on - strand, within ABZR87_RS15400at 3242.063 kb on - strand, within ABZR87_RS15400at 3242.063 kb on - strand, within ABZR87_RS15400at 3242.063 kb on - strand, within ABZR87_RS15400at 3242.063 kb on - strand, within ABZR87_RS15400at 3242.063 kb on - strand, within ABZR87_RS15400at 3242.063 kb on - strand, within ABZR87_RS15400at 3242.063 kb on - strand, within ABZR87_RS15400at 3242.063 kb on - strand, within ABZR87_RS15400at 3242.063 kb on - strand, within ABZR87_RS15400at 3242.444 kb on + strandat 3242.444 kb on + strandat 3242.444 kb on + strandat 3242.461 kb on + strandat 3242.463 kb on + strandat 3242.463 kb on + strandat 3242.463 kb on + strandat 3242.559 kb on + strandat 3242.568 kb on + strandat 3242.568 kb on + strandat 3242.776 kb on + strand, within ABZR87_RS15405at 3242.776 kb on + strand, within ABZR87_RS15405at 3242.890 kb on + strand, within ABZR87_RS15405at 3242.890 kb on + strand, within ABZR87_RS15405at 3242.890 kb on + strand, within ABZR87_RS15405at 3242.890 kb on + strand, within ABZR87_RS15405at 3243.256 kb on + strandat 3243.347 kb on + strandat 3243.347 kb on + strandat 3243.347 kb on + strandat 3243.347 kb on + strandat 3243.348 kb on - strandat 3243.348 kb on - strandat 3243.437 kb on + strandat 3243.437 kb on + strandat 3243.438 kb on - strandat 3243.747 kb on - strand, within ABZR87_RS15410

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 4; outgrowth in LB
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3,241,662 - ABZR87_RS15400 0.55 +0.9
3,241,662 - ABZR87_RS15400 0.55 -0.2
3,241,662 - ABZR87_RS15400 0.55 -2.5
3,241,662 - ABZR87_RS15400 0.55 -0.3
3,241,839 + ABZR87_RS15400 0.67 +1.2
3,241,839 + ABZR87_RS15400 0.67 -0.2
3,241,840 - ABZR87_RS15400 0.67 -0.3
3,241,840 - ABZR87_RS15400 0.67 +0.6
3,241,840 - ABZR87_RS15400 0.67 -0.2
3,241,840 - ABZR87_RS15400 0.67 +0.2
3,241,848 - ABZR87_RS15400 0.67 -0.3
3,241,859 + ABZR87_RS15400 0.68 -2.1
3,241,860 - ABZR87_RS15400 0.68 -0.9
3,242,062 + ABZR87_RS15400 0.81 -0.3
3,242,062 + ABZR87_RS15400 0.81 -0.6
3,242,062 + ABZR87_RS15400 0.81 +1.0
3,242,062 + ABZR87_RS15400 0.81 +0.1
3,242,062 + ABZR87_RS15400 0.81 -0.3
3,242,062 + ABZR87_RS15400 0.81 +1.5
3,242,062 + ABZR87_RS15400 0.81 -1.5
3,242,062 + ABZR87_RS15400 0.81 -0.4
3,242,062 + ABZR87_RS15400 0.81 -1.1
3,242,062 + ABZR87_RS15400 0.81 +1.5
3,242,063 - ABZR87_RS15400 0.81 +0.3
3,242,063 - ABZR87_RS15400 0.81 +0.2
3,242,063 - ABZR87_RS15400 0.81 -0.0
3,242,063 - ABZR87_RS15400 0.81 +0.1
3,242,063 - ABZR87_RS15400 0.81 -1.4
3,242,063 - ABZR87_RS15400 0.81 +0.1
3,242,063 - ABZR87_RS15400 0.81 +0.0
3,242,063 - ABZR87_RS15400 0.81 -0.1
3,242,063 - ABZR87_RS15400 0.81 +0.0
3,242,063 - ABZR87_RS15400 0.81 -2.9
3,242,063 - ABZR87_RS15400 0.81 -0.6
3,242,063 - ABZR87_RS15400 0.81 -0.6
3,242,063 - ABZR87_RS15400 0.81 -0.5
3,242,444 + +0.8
3,242,444 + -0.9
3,242,444 + -1.1
3,242,461 + +0.3
3,242,463 + +0.0
3,242,463 + -0.3
3,242,463 + +0.3
3,242,559 + +1.3
3,242,568 + -1.5
3,242,568 + -1.6
3,242,776 + ABZR87_RS15405 0.33 -2.8
3,242,776 + ABZR87_RS15405 0.33 -0.1
3,242,890 + ABZR87_RS15405 0.49 -0.2
3,242,890 + ABZR87_RS15405 0.49 -2.5
3,242,890 + ABZR87_RS15405 0.49 -0.2
3,242,890 + ABZR87_RS15405 0.49 -1.8
3,243,256 + +0.4
3,243,347 + -1.9
3,243,347 + -0.0
3,243,347 + -0.9
3,243,347 + +0.7
3,243,348 - +0.8
3,243,348 - +0.2
3,243,437 + -1.2
3,243,437 + +1.8
3,243,438 - -0.5
3,243,747 - ABZR87_RS15410 0.31 -0.1

Or see this region's nucleotide sequence