Experiment: rhizosphere sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS14355 and ABZR87_RS14360 are separated by 22 nucleotides ABZR87_RS14360 and ABZR87_RS14365 are separated by 203 nucleotides
ABZR87_RS14355: ABZR87_RS14355 - sodium:solute symporter family protein, at 3,033,388 to 3,035,451
_RS14355
ABZR87_RS14360: ABZR87_RS14360 - acetate--CoA ligase, at 3,035,474 to 3,037,456
_RS14360
ABZR87_RS14365: ABZR87_RS14365 - DMT family transporter, at 3,037,660 to 3,038,631
_RS14365
Position (kb)
3035
3036
3037
3038 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3034.712 kb on + strand, within ABZR87_RS14355 at 3034.712 kb on + strand, within ABZR87_RS14355 at 3034.769 kb on + strand, within ABZR87_RS14355 at 3034.769 kb on + strand, within ABZR87_RS14355 at 3034.769 kb on + strand, within ABZR87_RS14355 at 3034.769 kb on + strand, within ABZR87_RS14355 at 3034.770 kb on - strand, within ABZR87_RS14355 at 3034.770 kb on - strand, within ABZR87_RS14355 at 3034.922 kb on + strand, within ABZR87_RS14355 at 3034.922 kb on + strand, within ABZR87_RS14355 at 3034.923 kb on - strand, within ABZR87_RS14355 at 3035.001 kb on - strand, within ABZR87_RS14355 at 3035.051 kb on + strand, within ABZR87_RS14355 at 3035.051 kb on + strand, within ABZR87_RS14355 at 3035.051 kb on + strand, within ABZR87_RS14355 at 3035.082 kb on - strand, within ABZR87_RS14355 at 3035.101 kb on + strand, within ABZR87_RS14355 at 3035.101 kb on + strand, within ABZR87_RS14355 at 3035.102 kb on - strand, within ABZR87_RS14355 at 3035.102 kb on - strand, within ABZR87_RS14355 at 3035.106 kb on - strand, within ABZR87_RS14355 at 3035.120 kb on + strand, within ABZR87_RS14355 at 3035.120 kb on + strand, within ABZR87_RS14355 at 3035.232 kb on - strand, within ABZR87_RS14355 at 3035.232 kb on - strand, within ABZR87_RS14355 at 3035.234 kb on + strand, within ABZR87_RS14355 at 3035.235 kb on - strand, within ABZR87_RS14355 at 3035.235 kb on - strand, within ABZR87_RS14355 at 3035.279 kb on + strand at 3035.279 kb on + strand at 3035.279 kb on + strand at 3035.279 kb on + strand at 3035.279 kb on + strand at 3035.279 kb on + strand at 3035.279 kb on + strand at 3035.280 kb on - strand at 3035.280 kb on - strand at 3035.280 kb on - strand at 3035.280 kb on - strand at 3035.280 kb on - strand at 3035.280 kb on - strand at 3035.280 kb on - strand at 3035.309 kb on + strand at 3035.385 kb on + strand at 3035.386 kb on - strand at 3035.387 kb on + strand at 3035.388 kb on - strand at 3035.388 kb on - strand at 3035.400 kb on - strand at 3035.475 kb on + strand at 3035.893 kb on - strand, within ABZR87_RS14360 at 3035.893 kb on - strand, within ABZR87_RS14360 at 3035.934 kb on + strand, within ABZR87_RS14360 at 3035.934 kb on + strand, within ABZR87_RS14360 at 3035.935 kb on - strand, within ABZR87_RS14360 at 3035.965 kb on - strand, within ABZR87_RS14360 at 3035.965 kb on - strand, within ABZR87_RS14360 at 3036.194 kb on - strand, within ABZR87_RS14360 at 3036.194 kb on - strand, within ABZR87_RS14360 at 3036.194 kb on - strand, within ABZR87_RS14360 at 3036.234 kb on + strand, within ABZR87_RS14360 at 3036.234 kb on + strand, within ABZR87_RS14360 at 3036.235 kb on - strand, within ABZR87_RS14360 at 3036.303 kb on + strand, within ABZR87_RS14360 at 3036.304 kb on - strand, within ABZR87_RS14360 at 3036.304 kb on - strand, within ABZR87_RS14360 at 3036.375 kb on + strand, within ABZR87_RS14360 at 3036.375 kb on + strand, within ABZR87_RS14360 at 3036.376 kb on - strand, within ABZR87_RS14360 at 3036.495 kb on + strand, within ABZR87_RS14360 at 3036.495 kb on + strand, within ABZR87_RS14360 at 3036.495 kb on + strand, within ABZR87_RS14360 at 3036.495 kb on + strand, within ABZR87_RS14360 at 3036.495 kb on + strand, within ABZR87_RS14360 at 3036.495 kb on + strand, within ABZR87_RS14360 at 3036.496 kb on - strand, within ABZR87_RS14360 at 3036.496 kb on - strand, within ABZR87_RS14360 at 3036.496 kb on - strand, within ABZR87_RS14360 at 3036.651 kb on + strand, within ABZR87_RS14360 at 3036.651 kb on + strand, within ABZR87_RS14360 at 3036.651 kb on + strand, within ABZR87_RS14360 at 3036.652 kb on - strand, within ABZR87_RS14360 at 3036.652 kb on - strand, within ABZR87_RS14360 at 3037.026 kb on + strand, within ABZR87_RS14360 at 3037.026 kb on + strand, within ABZR87_RS14360 at 3037.027 kb on - strand, within ABZR87_RS14360 at 3037.027 kb on - strand, within ABZR87_RS14360 at 3037.027 kb on - strand, within ABZR87_RS14360 at 3037.110 kb on + strand, within ABZR87_RS14360 at 3037.114 kb on + strand, within ABZR87_RS14360 at 3037.115 kb on - strand, within ABZR87_RS14360 at 3037.115 kb on - strand, within ABZR87_RS14360 at 3037.239 kb on + strand, within ABZR87_RS14360 at 3037.362 kb on + strand at 3037.362 kb on + strand at 3037.363 kb on - strand at 3037.469 kb on + strand at 3037.469 kb on + strand at 3037.469 kb on + strand at 3037.482 kb on - strand at 3037.482 kb on - strand at 3037.501 kb on + strand at 3037.502 kb on - strand at 3037.526 kb on + strand at 3037.526 kb on + strand at 3037.563 kb on + strand at 3037.564 kb on - strand at 3037.566 kb on + strand at 3037.566 kb on + strand at 3037.566 kb on + strand at 3037.566 kb on + strand at 3037.566 kb on + strand at 3037.566 kb on + strand at 3037.567 kb on - strand at 3037.567 kb on - strand at 3037.567 kb on - strand at 3037.567 kb on - strand at 3037.567 kb on - strand at 3037.567 kb on - strand at 3037.567 kb on - strand at 3037.567 kb on - strand at 3037.567 kb on - strand at 3037.568 kb on + strand at 3037.568 kb on + strand at 3037.610 kb on + strand at 3037.610 kb on + strand at 3037.725 kb on + strand at 3037.807 kb on + strand, within ABZR87_RS14365 at 3037.807 kb on + strand, within ABZR87_RS14365 at 3037.808 kb on - strand, within ABZR87_RS14365 at 3037.878 kb on + strand, within ABZR87_RS14365 at 3038.154 kb on - strand, within ABZR87_RS14365 at 3038.167 kb on + strand, within ABZR87_RS14365 at 3038.167 kb on + strand, within ABZR87_RS14365 at 3038.167 kb on + strand, within ABZR87_RS14365 at 3038.167 kb on + strand, within ABZR87_RS14365 at 3038.167 kb on + strand, within ABZR87_RS14365 at 3038.168 kb on - strand, within ABZR87_RS14365 at 3038.168 kb on - strand, within ABZR87_RS14365 at 3038.168 kb on - strand, within ABZR87_RS14365 at 3038.224 kb on + strand, within ABZR87_RS14365 at 3038.225 kb on - strand, within ABZR87_RS14365 at 3038.332 kb on + strand, within ABZR87_RS14365 at 3038.333 kb on - strand, within ABZR87_RS14365 at 3038.446 kb on + strand, within ABZR87_RS14365 at 3038.446 kb on + strand, within ABZR87_RS14365 at 3038.447 kb on - strand, within ABZR87_RS14365 at 3038.447 kb on - strand, within ABZR87_RS14365 at 3038.447 kb on - strand, within ABZR87_RS14365 at 3038.447 kb on - strand, within ABZR87_RS14365
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 4; outgrowth in LB remove 3,034,712 + ABZR87_RS14355 0.64 -1.3 3,034,712 + ABZR87_RS14355 0.64 -1.0 3,034,769 + ABZR87_RS14355 0.67 +0.2 3,034,769 + ABZR87_RS14355 0.67 -0.2 3,034,769 + ABZR87_RS14355 0.67 -1.3 3,034,769 + ABZR87_RS14355 0.67 -0.8 3,034,770 - ABZR87_RS14355 0.67 -0.5 3,034,770 - ABZR87_RS14355 0.67 +0.6 3,034,922 + ABZR87_RS14355 0.74 +0.5 3,034,922 + ABZR87_RS14355 0.74 -2.5 3,034,923 - ABZR87_RS14355 0.74 +0.6 3,035,001 - ABZR87_RS14355 0.78 -0.2 3,035,051 + ABZR87_RS14355 0.81 +0.6 3,035,051 + ABZR87_RS14355 0.81 +0.8 3,035,051 + ABZR87_RS14355 0.81 +0.0 3,035,082 - ABZR87_RS14355 0.82 +1.1 3,035,101 + ABZR87_RS14355 0.83 +0.1 3,035,101 + ABZR87_RS14355 0.83 +0.3 3,035,102 - ABZR87_RS14355 0.83 +0.6 3,035,102 - ABZR87_RS14355 0.83 +0.4 3,035,106 - ABZR87_RS14355 0.83 +1.0 3,035,120 + ABZR87_RS14355 0.84 -0.4 3,035,120 + ABZR87_RS14355 0.84 +0.5 3,035,232 - ABZR87_RS14355 0.89 -1.2 3,035,232 - ABZR87_RS14355 0.89 -0.4 3,035,234 + ABZR87_RS14355 0.89 +0.7 3,035,235 - ABZR87_RS14355 0.89 -1.4 3,035,235 - ABZR87_RS14355 0.89 +2.0 3,035,279 + +0.7 3,035,279 + +0.2 3,035,279 + +0.6 3,035,279 + -0.9 3,035,279 + +0.5 3,035,279 + -0.9 3,035,279 + +0.6 3,035,280 - -0.1 3,035,280 - -1.0 3,035,280 - -0.7 3,035,280 - +0.8 3,035,280 - -0.4 3,035,280 - -0.3 3,035,280 - +0.9 3,035,309 + +0.5 3,035,385 + -0.5 3,035,386 - -0.1 3,035,387 + -0.0 3,035,388 - +1.8 3,035,388 - +0.0 3,035,400 - -0.1 3,035,475 + +0.9 3,035,893 - ABZR87_RS14360 0.21 -0.2 3,035,893 - ABZR87_RS14360 0.21 -0.2 3,035,934 + ABZR87_RS14360 0.23 -1.1 3,035,934 + ABZR87_RS14360 0.23 +2.5 3,035,935 - ABZR87_RS14360 0.23 -2.7 3,035,965 - ABZR87_RS14360 0.25 +0.4 3,035,965 - ABZR87_RS14360 0.25 -2.0 3,036,194 - ABZR87_RS14360 0.36 -2.5 3,036,194 - ABZR87_RS14360 0.36 -1.7 3,036,194 - ABZR87_RS14360 0.36 -1.6 3,036,234 + ABZR87_RS14360 0.38 +0.4 3,036,234 + ABZR87_RS14360 0.38 -1.2 3,036,235 - ABZR87_RS14360 0.38 -2.5 3,036,303 + ABZR87_RS14360 0.42 -1.3 3,036,304 - ABZR87_RS14360 0.42 +0.3 3,036,304 - ABZR87_RS14360 0.42 -0.2 3,036,375 + ABZR87_RS14360 0.45 -1.1 3,036,375 + ABZR87_RS14360 0.45 -1.8 3,036,376 - ABZR87_RS14360 0.45 -2.6 3,036,495 + ABZR87_RS14360 0.51 -2.2 3,036,495 + ABZR87_RS14360 0.51 -2.3 3,036,495 + ABZR87_RS14360 0.51 -0.6 3,036,495 + ABZR87_RS14360 0.51 -1.2 3,036,495 + ABZR87_RS14360 0.51 -1.4 3,036,495 + ABZR87_RS14360 0.51 -2.9 3,036,496 - ABZR87_RS14360 0.52 -0.5 3,036,496 - ABZR87_RS14360 0.52 -1.7 3,036,496 - ABZR87_RS14360 0.52 +0.5 3,036,651 + ABZR87_RS14360 0.59 -0.4 3,036,651 + ABZR87_RS14360 0.59 -0.5 3,036,651 + ABZR87_RS14360 0.59 -0.5 3,036,652 - ABZR87_RS14360 0.59 -0.6 3,036,652 - ABZR87_RS14360 0.59 -0.2 3,037,026 + ABZR87_RS14360 0.78 -1.4 3,037,026 + ABZR87_RS14360 0.78 -0.1 3,037,027 - ABZR87_RS14360 0.78 -1.3 3,037,027 - ABZR87_RS14360 0.78 +0.1 3,037,027 - ABZR87_RS14360 0.78 +0.2 3,037,110 + ABZR87_RS14360 0.83 -1.5 3,037,114 + ABZR87_RS14360 0.83 -1.3 3,037,115 - ABZR87_RS14360 0.83 -2.4 3,037,115 - ABZR87_RS14360 0.83 +1.2 3,037,239 + ABZR87_RS14360 0.89 -0.1 3,037,362 + -1.3 3,037,362 + -1.0 3,037,363 - -1.4 3,037,469 + -1.5 3,037,469 + -0.2 3,037,469 + -0.8 3,037,482 - -2.1 3,037,482 - -0.3 3,037,501 + -0.8 3,037,502 - -0.2 3,037,526 + -0.2 3,037,526 + +1.0 3,037,563 + +0.4 3,037,564 - +1.3 3,037,566 + -0.4 3,037,566 + -0.0 3,037,566 + -0.5 3,037,566 + -0.2 3,037,566 + -0.3 3,037,566 + -0.3 3,037,567 - -0.1 3,037,567 - -0.8 3,037,567 - +0.6 3,037,567 - +0.4 3,037,567 - -1.0 3,037,567 - -0.1 3,037,567 - +0.6 3,037,567 - +0.2 3,037,567 - -0.9 3,037,568 + -0.1 3,037,568 + +0.7 3,037,610 + -0.4 3,037,610 + +0.1 3,037,725 + +0.1 3,037,807 + ABZR87_RS14365 0.15 -0.2 3,037,807 + ABZR87_RS14365 0.15 +0.7 3,037,808 - ABZR87_RS14365 0.15 +0.1 3,037,878 + ABZR87_RS14365 0.22 -2.1 3,038,154 - ABZR87_RS14365 0.51 +0.8 3,038,167 + ABZR87_RS14365 0.52 -0.2 3,038,167 + ABZR87_RS14365 0.52 -2.7 3,038,167 + ABZR87_RS14365 0.52 +0.2 3,038,167 + ABZR87_RS14365 0.52 -1.3 3,038,167 + ABZR87_RS14365 0.52 +0.1 3,038,168 - ABZR87_RS14365 0.52 +0.3 3,038,168 - ABZR87_RS14365 0.52 +0.3 3,038,168 - ABZR87_RS14365 0.52 -2.3 3,038,224 + ABZR87_RS14365 0.58 -0.1 3,038,225 - ABZR87_RS14365 0.58 -0.4 3,038,332 + ABZR87_RS14365 0.69 +1.7 3,038,333 - ABZR87_RS14365 0.69 -0.2 3,038,446 + ABZR87_RS14365 0.81 -0.1 3,038,446 + ABZR87_RS14365 0.81 -0.7 3,038,447 - ABZR87_RS14365 0.81 -0.6 3,038,447 - ABZR87_RS14365 0.81 +1.3 3,038,447 - ABZR87_RS14365 0.81 -1.4 3,038,447 - ABZR87_RS14365 0.81 -0.2
Or see this region's nucleotide sequence