Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS14360

Experiment: rhizosphere sample 4; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS14355 and ABZR87_RS14360 are separated by 22 nucleotidesABZR87_RS14360 and ABZR87_RS14365 are separated by 203 nucleotides ABZR87_RS14355: ABZR87_RS14355 - sodium:solute symporter family protein, at 3,033,388 to 3,035,451 _RS14355 ABZR87_RS14360: ABZR87_RS14360 - acetate--CoA ligase, at 3,035,474 to 3,037,456 _RS14360 ABZR87_RS14365: ABZR87_RS14365 - DMT family transporter, at 3,037,660 to 3,038,631 _RS14365 Position (kb) 3035 3036 3037 3038Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3034.712 kb on + strand, within ABZR87_RS14355at 3034.712 kb on + strand, within ABZR87_RS14355at 3034.769 kb on + strand, within ABZR87_RS14355at 3034.769 kb on + strand, within ABZR87_RS14355at 3034.769 kb on + strand, within ABZR87_RS14355at 3034.769 kb on + strand, within ABZR87_RS14355at 3034.770 kb on - strand, within ABZR87_RS14355at 3034.770 kb on - strand, within ABZR87_RS14355at 3034.922 kb on + strand, within ABZR87_RS14355at 3034.922 kb on + strand, within ABZR87_RS14355at 3034.923 kb on - strand, within ABZR87_RS14355at 3035.001 kb on - strand, within ABZR87_RS14355at 3035.051 kb on + strand, within ABZR87_RS14355at 3035.051 kb on + strand, within ABZR87_RS14355at 3035.051 kb on + strand, within ABZR87_RS14355at 3035.082 kb on - strand, within ABZR87_RS14355at 3035.101 kb on + strand, within ABZR87_RS14355at 3035.101 kb on + strand, within ABZR87_RS14355at 3035.102 kb on - strand, within ABZR87_RS14355at 3035.102 kb on - strand, within ABZR87_RS14355at 3035.106 kb on - strand, within ABZR87_RS14355at 3035.120 kb on + strand, within ABZR87_RS14355at 3035.120 kb on + strand, within ABZR87_RS14355at 3035.232 kb on - strand, within ABZR87_RS14355at 3035.232 kb on - strand, within ABZR87_RS14355at 3035.234 kb on + strand, within ABZR87_RS14355at 3035.235 kb on - strand, within ABZR87_RS14355at 3035.235 kb on - strand, within ABZR87_RS14355at 3035.279 kb on + strandat 3035.279 kb on + strandat 3035.279 kb on + strandat 3035.279 kb on + strandat 3035.279 kb on + strandat 3035.279 kb on + strandat 3035.279 kb on + strandat 3035.280 kb on - strandat 3035.280 kb on - strandat 3035.280 kb on - strandat 3035.280 kb on - strandat 3035.280 kb on - strandat 3035.280 kb on - strandat 3035.280 kb on - strandat 3035.309 kb on + strandat 3035.385 kb on + strandat 3035.386 kb on - strandat 3035.387 kb on + strandat 3035.388 kb on - strandat 3035.388 kb on - strandat 3035.400 kb on - strandat 3035.475 kb on + strandat 3035.893 kb on - strand, within ABZR87_RS14360at 3035.893 kb on - strand, within ABZR87_RS14360at 3035.934 kb on + strand, within ABZR87_RS14360at 3035.934 kb on + strand, within ABZR87_RS14360at 3035.935 kb on - strand, within ABZR87_RS14360at 3035.965 kb on - strand, within ABZR87_RS14360at 3035.965 kb on - strand, within ABZR87_RS14360at 3036.194 kb on - strand, within ABZR87_RS14360at 3036.194 kb on - strand, within ABZR87_RS14360at 3036.194 kb on - strand, within ABZR87_RS14360at 3036.234 kb on + strand, within ABZR87_RS14360at 3036.234 kb on + strand, within ABZR87_RS14360at 3036.235 kb on - strand, within ABZR87_RS14360at 3036.303 kb on + strand, within ABZR87_RS14360at 3036.304 kb on - strand, within ABZR87_RS14360at 3036.304 kb on - strand, within ABZR87_RS14360at 3036.375 kb on + strand, within ABZR87_RS14360at 3036.375 kb on + strand, within ABZR87_RS14360at 3036.376 kb on - strand, within ABZR87_RS14360at 3036.495 kb on + strand, within ABZR87_RS14360at 3036.495 kb on + strand, within ABZR87_RS14360at 3036.495 kb on + strand, within ABZR87_RS14360at 3036.495 kb on + strand, within ABZR87_RS14360at 3036.495 kb on + strand, within ABZR87_RS14360at 3036.495 kb on + strand, within ABZR87_RS14360at 3036.496 kb on - strand, within ABZR87_RS14360at 3036.496 kb on - strand, within ABZR87_RS14360at 3036.496 kb on - strand, within ABZR87_RS14360at 3036.651 kb on + strand, within ABZR87_RS14360at 3036.651 kb on + strand, within ABZR87_RS14360at 3036.651 kb on + strand, within ABZR87_RS14360at 3036.652 kb on - strand, within ABZR87_RS14360at 3036.652 kb on - strand, within ABZR87_RS14360at 3037.026 kb on + strand, within ABZR87_RS14360at 3037.026 kb on + strand, within ABZR87_RS14360at 3037.027 kb on - strand, within ABZR87_RS14360at 3037.027 kb on - strand, within ABZR87_RS14360at 3037.027 kb on - strand, within ABZR87_RS14360at 3037.110 kb on + strand, within ABZR87_RS14360at 3037.114 kb on + strand, within ABZR87_RS14360at 3037.115 kb on - strand, within ABZR87_RS14360at 3037.115 kb on - strand, within ABZR87_RS14360at 3037.239 kb on + strand, within ABZR87_RS14360at 3037.362 kb on + strandat 3037.362 kb on + strandat 3037.363 kb on - strandat 3037.469 kb on + strandat 3037.469 kb on + strandat 3037.469 kb on + strandat 3037.482 kb on - strandat 3037.482 kb on - strandat 3037.501 kb on + strandat 3037.502 kb on - strandat 3037.526 kb on + strandat 3037.526 kb on + strandat 3037.563 kb on + strandat 3037.564 kb on - strandat 3037.566 kb on + strandat 3037.566 kb on + strandat 3037.566 kb on + strandat 3037.566 kb on + strandat 3037.566 kb on + strandat 3037.566 kb on + strandat 3037.567 kb on - strandat 3037.567 kb on - strandat 3037.567 kb on - strandat 3037.567 kb on - strandat 3037.567 kb on - strandat 3037.567 kb on - strandat 3037.567 kb on - strandat 3037.567 kb on - strandat 3037.567 kb on - strandat 3037.568 kb on + strandat 3037.568 kb on + strandat 3037.610 kb on + strandat 3037.610 kb on + strandat 3037.725 kb on + strandat 3037.807 kb on + strand, within ABZR87_RS14365at 3037.807 kb on + strand, within ABZR87_RS14365at 3037.808 kb on - strand, within ABZR87_RS14365at 3037.878 kb on + strand, within ABZR87_RS14365at 3038.154 kb on - strand, within ABZR87_RS14365at 3038.167 kb on + strand, within ABZR87_RS14365at 3038.167 kb on + strand, within ABZR87_RS14365at 3038.167 kb on + strand, within ABZR87_RS14365at 3038.167 kb on + strand, within ABZR87_RS14365at 3038.167 kb on + strand, within ABZR87_RS14365at 3038.168 kb on - strand, within ABZR87_RS14365at 3038.168 kb on - strand, within ABZR87_RS14365at 3038.168 kb on - strand, within ABZR87_RS14365at 3038.224 kb on + strand, within ABZR87_RS14365at 3038.225 kb on - strand, within ABZR87_RS14365at 3038.332 kb on + strand, within ABZR87_RS14365at 3038.333 kb on - strand, within ABZR87_RS14365at 3038.446 kb on + strand, within ABZR87_RS14365at 3038.446 kb on + strand, within ABZR87_RS14365at 3038.447 kb on - strand, within ABZR87_RS14365at 3038.447 kb on - strand, within ABZR87_RS14365at 3038.447 kb on - strand, within ABZR87_RS14365at 3038.447 kb on - strand, within ABZR87_RS14365

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 4; outgrowth in LB
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3,034,712 + ABZR87_RS14355 0.64 -1.3
3,034,712 + ABZR87_RS14355 0.64 -1.0
3,034,769 + ABZR87_RS14355 0.67 +0.2
3,034,769 + ABZR87_RS14355 0.67 -0.2
3,034,769 + ABZR87_RS14355 0.67 -1.3
3,034,769 + ABZR87_RS14355 0.67 -0.8
3,034,770 - ABZR87_RS14355 0.67 -0.5
3,034,770 - ABZR87_RS14355 0.67 +0.6
3,034,922 + ABZR87_RS14355 0.74 +0.5
3,034,922 + ABZR87_RS14355 0.74 -2.5
3,034,923 - ABZR87_RS14355 0.74 +0.6
3,035,001 - ABZR87_RS14355 0.78 -0.2
3,035,051 + ABZR87_RS14355 0.81 +0.6
3,035,051 + ABZR87_RS14355 0.81 +0.8
3,035,051 + ABZR87_RS14355 0.81 +0.0
3,035,082 - ABZR87_RS14355 0.82 +1.1
3,035,101 + ABZR87_RS14355 0.83 +0.1
3,035,101 + ABZR87_RS14355 0.83 +0.3
3,035,102 - ABZR87_RS14355 0.83 +0.6
3,035,102 - ABZR87_RS14355 0.83 +0.4
3,035,106 - ABZR87_RS14355 0.83 +1.0
3,035,120 + ABZR87_RS14355 0.84 -0.4
3,035,120 + ABZR87_RS14355 0.84 +0.5
3,035,232 - ABZR87_RS14355 0.89 -1.2
3,035,232 - ABZR87_RS14355 0.89 -0.4
3,035,234 + ABZR87_RS14355 0.89 +0.7
3,035,235 - ABZR87_RS14355 0.89 -1.4
3,035,235 - ABZR87_RS14355 0.89 +2.0
3,035,279 + +0.7
3,035,279 + +0.2
3,035,279 + +0.6
3,035,279 + -0.9
3,035,279 + +0.5
3,035,279 + -0.9
3,035,279 + +0.6
3,035,280 - -0.1
3,035,280 - -1.0
3,035,280 - -0.7
3,035,280 - +0.8
3,035,280 - -0.4
3,035,280 - -0.3
3,035,280 - +0.9
3,035,309 + +0.5
3,035,385 + -0.5
3,035,386 - -0.1
3,035,387 + -0.0
3,035,388 - +1.8
3,035,388 - +0.0
3,035,400 - -0.1
3,035,475 + +0.9
3,035,893 - ABZR87_RS14360 0.21 -0.2
3,035,893 - ABZR87_RS14360 0.21 -0.2
3,035,934 + ABZR87_RS14360 0.23 -1.1
3,035,934 + ABZR87_RS14360 0.23 +2.5
3,035,935 - ABZR87_RS14360 0.23 -2.7
3,035,965 - ABZR87_RS14360 0.25 +0.4
3,035,965 - ABZR87_RS14360 0.25 -2.0
3,036,194 - ABZR87_RS14360 0.36 -2.5
3,036,194 - ABZR87_RS14360 0.36 -1.7
3,036,194 - ABZR87_RS14360 0.36 -1.6
3,036,234 + ABZR87_RS14360 0.38 +0.4
3,036,234 + ABZR87_RS14360 0.38 -1.2
3,036,235 - ABZR87_RS14360 0.38 -2.5
3,036,303 + ABZR87_RS14360 0.42 -1.3
3,036,304 - ABZR87_RS14360 0.42 +0.3
3,036,304 - ABZR87_RS14360 0.42 -0.2
3,036,375 + ABZR87_RS14360 0.45 -1.1
3,036,375 + ABZR87_RS14360 0.45 -1.8
3,036,376 - ABZR87_RS14360 0.45 -2.6
3,036,495 + ABZR87_RS14360 0.51 -2.2
3,036,495 + ABZR87_RS14360 0.51 -2.3
3,036,495 + ABZR87_RS14360 0.51 -0.6
3,036,495 + ABZR87_RS14360 0.51 -1.2
3,036,495 + ABZR87_RS14360 0.51 -1.4
3,036,495 + ABZR87_RS14360 0.51 -2.9
3,036,496 - ABZR87_RS14360 0.52 -0.5
3,036,496 - ABZR87_RS14360 0.52 -1.7
3,036,496 - ABZR87_RS14360 0.52 +0.5
3,036,651 + ABZR87_RS14360 0.59 -0.4
3,036,651 + ABZR87_RS14360 0.59 -0.5
3,036,651 + ABZR87_RS14360 0.59 -0.5
3,036,652 - ABZR87_RS14360 0.59 -0.6
3,036,652 - ABZR87_RS14360 0.59 -0.2
3,037,026 + ABZR87_RS14360 0.78 -1.4
3,037,026 + ABZR87_RS14360 0.78 -0.1
3,037,027 - ABZR87_RS14360 0.78 -1.3
3,037,027 - ABZR87_RS14360 0.78 +0.1
3,037,027 - ABZR87_RS14360 0.78 +0.2
3,037,110 + ABZR87_RS14360 0.83 -1.5
3,037,114 + ABZR87_RS14360 0.83 -1.3
3,037,115 - ABZR87_RS14360 0.83 -2.4
3,037,115 - ABZR87_RS14360 0.83 +1.2
3,037,239 + ABZR87_RS14360 0.89 -0.1
3,037,362 + -1.3
3,037,362 + -1.0
3,037,363 - -1.4
3,037,469 + -1.5
3,037,469 + -0.2
3,037,469 + -0.8
3,037,482 - -2.1
3,037,482 - -0.3
3,037,501 + -0.8
3,037,502 - -0.2
3,037,526 + -0.2
3,037,526 + +1.0
3,037,563 + +0.4
3,037,564 - +1.3
3,037,566 + -0.4
3,037,566 + -0.0
3,037,566 + -0.5
3,037,566 + -0.2
3,037,566 + -0.3
3,037,566 + -0.3
3,037,567 - -0.1
3,037,567 - -0.8
3,037,567 - +0.6
3,037,567 - +0.4
3,037,567 - -1.0
3,037,567 - -0.1
3,037,567 - +0.6
3,037,567 - +0.2
3,037,567 - -0.9
3,037,568 + -0.1
3,037,568 + +0.7
3,037,610 + -0.4
3,037,610 + +0.1
3,037,725 + +0.1
3,037,807 + ABZR87_RS14365 0.15 -0.2
3,037,807 + ABZR87_RS14365 0.15 +0.7
3,037,808 - ABZR87_RS14365 0.15 +0.1
3,037,878 + ABZR87_RS14365 0.22 -2.1
3,038,154 - ABZR87_RS14365 0.51 +0.8
3,038,167 + ABZR87_RS14365 0.52 -0.2
3,038,167 + ABZR87_RS14365 0.52 -2.7
3,038,167 + ABZR87_RS14365 0.52 +0.2
3,038,167 + ABZR87_RS14365 0.52 -1.3
3,038,167 + ABZR87_RS14365 0.52 +0.1
3,038,168 - ABZR87_RS14365 0.52 +0.3
3,038,168 - ABZR87_RS14365 0.52 +0.3
3,038,168 - ABZR87_RS14365 0.52 -2.3
3,038,224 + ABZR87_RS14365 0.58 -0.1
3,038,225 - ABZR87_RS14365 0.58 -0.4
3,038,332 + ABZR87_RS14365 0.69 +1.7
3,038,333 - ABZR87_RS14365 0.69 -0.2
3,038,446 + ABZR87_RS14365 0.81 -0.1
3,038,446 + ABZR87_RS14365 0.81 -0.7
3,038,447 - ABZR87_RS14365 0.81 -0.6
3,038,447 - ABZR87_RS14365 0.81 +1.3
3,038,447 - ABZR87_RS14365 0.81 -1.4
3,038,447 - ABZR87_RS14365 0.81 -0.2

Or see this region's nucleotide sequence