Experiment: rhizosphere sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS09975 and ABZR87_RS09980 are separated by 74 nucleotides ABZR87_RS09980 and ABZR87_RS09985 are separated by 71 nucleotides ABZR87_RS09985 and ABZR87_RS09990 are separated by 26 nucleotides ABZR87_RS09990 and ABZR87_RS09995 are separated by 10 nucleotides
ABZR87_RS09975: ABZR87_RS09975 - Fe-S cluster assembly transcriptional regulator IscR, at 2,121,123 to 2,121,716
_RS09975
ABZR87_RS09980: ABZR87_RS09980 - IscS subfamily cysteine desulfurase, at 2,121,791 to 2,123,008
_RS09980
ABZR87_RS09985: ABZR87_RS09985 - Fe-S cluster assembly scaffold IscU, at 2,123,080 to 2,123,481
_RS09985
ABZR87_RS09990: ABZR87_RS09990 - iron-sulfur cluster assembly protein IscA, at 2,123,508 to 2,123,828
_RS09990
ABZR87_RS09995: ABZR87_RS09995 - DUF3565 domain-containing protein, at 2,123,839 to 2,124,039
_RS09995
Position (kb)
2121
2122
2123
2124 Strain fitness (log2 ratio)
-2
-1
0
1 at 2120.875 kb on + strand at 2120.876 kb on - strand at 2120.981 kb on + strand at 2120.981 kb on + strand at 2121.058 kb on + strand at 2121.059 kb on - strand at 2121.059 kb on - strand at 2121.086 kb on - strand at 2121.087 kb on + strand at 2121.243 kb on + strand, within ABZR87_RS09975 at 2121.443 kb on + strand, within ABZR87_RS09975 at 2121.501 kb on + strand, within ABZR87_RS09975 at 2121.501 kb on + strand, within ABZR87_RS09975 at 2121.501 kb on + strand, within ABZR87_RS09975 at 2121.714 kb on + strand at 2121.714 kb on + strand at 2121.714 kb on + strand at 2121.776 kb on + strand at 2121.776 kb on + strand at 2121.790 kb on + strand at 2123.036 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 4; outgrowth in LB remove 2,120,875 + +1.4 2,120,876 - -0.3 2,120,981 + -1.1 2,120,981 + +0.1 2,121,058 + -0.1 2,121,059 - +0.6 2,121,059 - -0.5 2,121,086 - -0.2 2,121,087 + -0.7 2,121,243 + ABZR87_RS09975 0.20 -1.1 2,121,443 + ABZR87_RS09975 0.54 -1.8 2,121,501 + ABZR87_RS09975 0.64 -0.6 2,121,501 + ABZR87_RS09975 0.64 -1.4 2,121,501 + ABZR87_RS09975 0.64 -0.8 2,121,714 + -1.6 2,121,714 + +0.1 2,121,714 + -0.5 2,121,776 + +0.4 2,121,776 + +0.1 2,121,790 + +0.6 2,123,036 + -1.2
Or see this region's nucleotide sequence