Experiment: rhizosphere sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS09115 and ABZR87_RS09120 are separated by 46 nucleotides ABZR87_RS09120 and ABZR87_RS09125 are separated by 148 nucleotides ABZR87_RS09125 and ABZR87_RS09130 are separated by 139 nucleotides
ABZR87_RS09115: ABZR87_RS09115 - kynureninase, at 1,929,677 to 1,930,930
_RS09115
ABZR87_RS09120: ABZR87_RS09120 - arylformamidase, at 1,930,977 to 1,931,606
_RS09120
ABZR87_RS09125: ABZR87_RS09125 - Lrp/AsnC family transcriptional regulator, at 1,931,755 to 1,932,279
_RS09125
ABZR87_RS09130: ABZR87_RS09130 - flavin reductase family protein, at 1,932,419 to 1,932,997
_RS09130
Position (kb) 1930
1931
1932 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 1930.122 kb on + strand, within ABZR87_RS09115 at 1930.245 kb on + strand, within ABZR87_RS09115 at 1930.245 kb on + strand, within ABZR87_RS09115 at 1930.245 kb on + strand, within ABZR87_RS09115 at 1930.245 kb on + strand, within ABZR87_RS09115 at 1930.246 kb on - strand, within ABZR87_RS09115 at 1930.246 kb on - strand, within ABZR87_RS09115 at 1930.251 kb on + strand, within ABZR87_RS09115 at 1930.251 kb on + strand, within ABZR87_RS09115 at 1930.251 kb on + strand, within ABZR87_RS09115 at 1930.252 kb on - strand, within ABZR87_RS09115 at 1930.252 kb on - strand, within ABZR87_RS09115 at 1930.269 kb on + strand, within ABZR87_RS09115 at 1930.382 kb on + strand, within ABZR87_RS09115 at 1930.383 kb on + strand, within ABZR87_RS09115 at 1930.383 kb on + strand, within ABZR87_RS09115 at 1930.383 kb on + strand, within ABZR87_RS09115 at 1930.383 kb on + strand, within ABZR87_RS09115 at 1930.383 kb on + strand, within ABZR87_RS09115 at 1930.383 kb on + strand, within ABZR87_RS09115 at 1930.384 kb on - strand, within ABZR87_RS09115 at 1930.384 kb on - strand, within ABZR87_RS09115 at 1930.384 kb on - strand, within ABZR87_RS09115 at 1930.384 kb on - strand, within ABZR87_RS09115 at 1930.384 kb on - strand, within ABZR87_RS09115 at 1930.384 kb on - strand, within ABZR87_RS09115 at 1930.384 kb on - strand, within ABZR87_RS09115 at 1930.384 kb on - strand, within ABZR87_RS09115 at 1930.384 kb on - strand, within ABZR87_RS09115 at 1930.488 kb on + strand, within ABZR87_RS09115 at 1930.488 kb on + strand, within ABZR87_RS09115 at 1930.527 kb on + strand, within ABZR87_RS09115 at 1930.527 kb on + strand, within ABZR87_RS09115 at 1930.527 kb on + strand, within ABZR87_RS09115 at 1930.527 kb on + strand, within ABZR87_RS09115 at 1930.527 kb on + strand, within ABZR87_RS09115 at 1930.527 kb on + strand, within ABZR87_RS09115 at 1930.528 kb on - strand, within ABZR87_RS09115 at 1930.528 kb on - strand, within ABZR87_RS09115 at 1930.546 kb on + strand, within ABZR87_RS09115 at 1930.547 kb on - strand, within ABZR87_RS09115 at 1930.547 kb on - strand, within ABZR87_RS09115 at 1930.620 kb on + strand, within ABZR87_RS09115 at 1930.837 kb on - strand at 1931.057 kb on - strand, within ABZR87_RS09120 at 1931.275 kb on + strand, within ABZR87_RS09120 at 1931.275 kb on + strand, within ABZR87_RS09120 at 1931.275 kb on + strand, within ABZR87_RS09120 at 1931.275 kb on + strand, within ABZR87_RS09120 at 1931.276 kb on - strand, within ABZR87_RS09120 at 1931.276 kb on - strand, within ABZR87_RS09120 at 1931.383 kb on + strand, within ABZR87_RS09120 at 1931.384 kb on - strand, within ABZR87_RS09120 at 1931.384 kb on - strand, within ABZR87_RS09120 at 1931.428 kb on + strand, within ABZR87_RS09120 at 1931.429 kb on - strand, within ABZR87_RS09120 at 1931.651 kb on + strand at 1931.651 kb on + strand at 1931.651 kb on + strand at 1931.652 kb on - strand at 1931.680 kb on + strand at 1931.712 kb on - strand at 1931.712 kb on - strand at 1932.046 kb on + strand, within ABZR87_RS09125 at 1932.046 kb on + strand, within ABZR87_RS09125 at 1932.046 kb on + strand, within ABZR87_RS09125 at 1932.046 kb on + strand, within ABZR87_RS09125 at 1932.046 kb on + strand, within ABZR87_RS09125 at 1932.046 kb on + strand, within ABZR87_RS09125 at 1932.046 kb on + strand, within ABZR87_RS09125 at 1932.046 kb on + strand, within ABZR87_RS09125 at 1932.047 kb on - strand, within ABZR87_RS09125 at 1932.047 kb on - strand, within ABZR87_RS09125 at 1932.047 kb on - strand, within ABZR87_RS09125 at 1932.047 kb on - strand, within ABZR87_RS09125 at 1932.047 kb on - strand, within ABZR87_RS09125 at 1932.047 kb on - strand, within ABZR87_RS09125 at 1932.047 kb on - strand, within ABZR87_RS09125 at 1932.047 kb on - strand, within ABZR87_RS09125 at 1932.047 kb on - strand, within ABZR87_RS09125 at 1932.070 kb on + strand, within ABZR87_RS09125 at 1932.070 kb on + strand, within ABZR87_RS09125 at 1932.070 kb on + strand, within ABZR87_RS09125 at 1932.070 kb on + strand, within ABZR87_RS09125 at 1932.070 kb on + strand, within ABZR87_RS09125 at 1932.070 kb on + strand, within ABZR87_RS09125 at 1932.070 kb on + strand, within ABZR87_RS09125 at 1932.071 kb on - strand, within ABZR87_RS09125 at 1932.071 kb on - strand, within ABZR87_RS09125 at 1932.071 kb on - strand, within ABZR87_RS09125 at 1932.071 kb on - strand, within ABZR87_RS09125 at 1932.071 kb on - strand, within ABZR87_RS09125 at 1932.106 kb on + strand, within ABZR87_RS09125 at 1932.106 kb on + strand, within ABZR87_RS09125 at 1932.134 kb on - strand, within ABZR87_RS09125 at 1932.134 kb on - strand, within ABZR87_RS09125 at 1932.169 kb on - strand, within ABZR87_RS09125 at 1932.277 kb on + strand at 1932.277 kb on + strand at 1932.277 kb on + strand at 1932.277 kb on + strand at 1932.281 kb on + strand at 1932.281 kb on + strand at 1932.281 kb on + strand at 1932.281 kb on + strand at 1932.281 kb on + strand at 1932.282 kb on - strand at 1932.341 kb on - strand at 1932.347 kb on + strand at 1932.354 kb on + strand at 1932.354 kb on + strand at 1932.354 kb on + strand at 1932.355 kb on - strand at 1932.355 kb on - strand at 1932.355 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 4; outgrowth in LB remove 1,930,122 + ABZR87_RS09115 0.35 +0.1 1,930,245 + ABZR87_RS09115 0.45 +0.3 1,930,245 + ABZR87_RS09115 0.45 +4.9 1,930,245 + ABZR87_RS09115 0.45 +0.8 1,930,245 + ABZR87_RS09115 0.45 -0.4 1,930,246 - ABZR87_RS09115 0.45 +0.5 1,930,246 - ABZR87_RS09115 0.45 -0.4 1,930,251 + ABZR87_RS09115 0.46 +0.7 1,930,251 + ABZR87_RS09115 0.46 +0.5 1,930,251 + ABZR87_RS09115 0.46 +0.3 1,930,252 - ABZR87_RS09115 0.46 -0.1 1,930,252 - ABZR87_RS09115 0.46 +0.0 1,930,269 + ABZR87_RS09115 0.47 +0.4 1,930,382 + ABZR87_RS09115 0.56 +0.6 1,930,383 + ABZR87_RS09115 0.56 +1.1 1,930,383 + ABZR87_RS09115 0.56 +0.4 1,930,383 + ABZR87_RS09115 0.56 +0.1 1,930,383 + ABZR87_RS09115 0.56 -0.6 1,930,383 + ABZR87_RS09115 0.56 -0.1 1,930,383 + ABZR87_RS09115 0.56 -0.0 1,930,384 - ABZR87_RS09115 0.56 -1.4 1,930,384 - ABZR87_RS09115 0.56 -1.7 1,930,384 - ABZR87_RS09115 0.56 -0.3 1,930,384 - ABZR87_RS09115 0.56 +0.3 1,930,384 - ABZR87_RS09115 0.56 +0.2 1,930,384 - ABZR87_RS09115 0.56 +1.5 1,930,384 - ABZR87_RS09115 0.56 -1.2 1,930,384 - ABZR87_RS09115 0.56 -0.4 1,930,384 - ABZR87_RS09115 0.56 -0.1 1,930,488 + ABZR87_RS09115 0.65 -0.5 1,930,488 + ABZR87_RS09115 0.65 +0.8 1,930,527 + ABZR87_RS09115 0.68 -0.1 1,930,527 + ABZR87_RS09115 0.68 +0.7 1,930,527 + ABZR87_RS09115 0.68 +0.4 1,930,527 + ABZR87_RS09115 0.68 -0.5 1,930,527 + ABZR87_RS09115 0.68 -0.2 1,930,527 + ABZR87_RS09115 0.68 -0.8 1,930,528 - ABZR87_RS09115 0.68 -0.5 1,930,528 - ABZR87_RS09115 0.68 -0.4 1,930,546 + ABZR87_RS09115 0.69 -0.1 1,930,547 - ABZR87_RS09115 0.69 +0.6 1,930,547 - ABZR87_RS09115 0.69 +1.0 1,930,620 + ABZR87_RS09115 0.75 -1.5 1,930,837 - -0.6 1,931,057 - ABZR87_RS09120 0.13 -1.3 1,931,275 + ABZR87_RS09120 0.47 +0.6 1,931,275 + ABZR87_RS09120 0.47 +0.6 1,931,275 + ABZR87_RS09120 0.47 +0.1 1,931,275 + ABZR87_RS09120 0.47 -0.6 1,931,276 - ABZR87_RS09120 0.47 +0.2 1,931,276 - ABZR87_RS09120 0.47 -0.4 1,931,383 + ABZR87_RS09120 0.64 -0.2 1,931,384 - ABZR87_RS09120 0.65 -1.6 1,931,384 - ABZR87_RS09120 0.65 -0.8 1,931,428 + ABZR87_RS09120 0.72 +0.4 1,931,429 - ABZR87_RS09120 0.72 +0.1 1,931,651 + +0.5 1,931,651 + -0.5 1,931,651 + -0.6 1,931,652 - -1.1 1,931,680 + -0.8 1,931,712 - -0.7 1,931,712 - -0.8 1,932,046 + ABZR87_RS09125 0.55 -0.0 1,932,046 + ABZR87_RS09125 0.55 -1.0 1,932,046 + ABZR87_RS09125 0.55 -0.6 1,932,046 + ABZR87_RS09125 0.55 +0.4 1,932,046 + ABZR87_RS09125 0.55 -0.4 1,932,046 + ABZR87_RS09125 0.55 -1.1 1,932,046 + ABZR87_RS09125 0.55 -1.4 1,932,046 + ABZR87_RS09125 0.55 +0.3 1,932,047 - ABZR87_RS09125 0.56 -0.4 1,932,047 - ABZR87_RS09125 0.56 +0.9 1,932,047 - ABZR87_RS09125 0.56 -0.5 1,932,047 - ABZR87_RS09125 0.56 -0.5 1,932,047 - ABZR87_RS09125 0.56 -0.2 1,932,047 - ABZR87_RS09125 0.56 -0.5 1,932,047 - ABZR87_RS09125 0.56 +0.2 1,932,047 - ABZR87_RS09125 0.56 +0.4 1,932,047 - ABZR87_RS09125 0.56 +0.6 1,932,070 + ABZR87_RS09125 0.60 +0.8 1,932,070 + ABZR87_RS09125 0.60 +0.1 1,932,070 + ABZR87_RS09125 0.60 -0.8 1,932,070 + ABZR87_RS09125 0.60 +0.0 1,932,070 + ABZR87_RS09125 0.60 -0.5 1,932,070 + ABZR87_RS09125 0.60 -1.2 1,932,070 + ABZR87_RS09125 0.60 -0.9 1,932,071 - ABZR87_RS09125 0.60 -0.1 1,932,071 - ABZR87_RS09125 0.60 +0.7 1,932,071 - ABZR87_RS09125 0.60 +0.5 1,932,071 - ABZR87_RS09125 0.60 +0.8 1,932,071 - ABZR87_RS09125 0.60 -0.3 1,932,106 + ABZR87_RS09125 0.67 -0.7 1,932,106 + ABZR87_RS09125 0.67 +0.3 1,932,134 - ABZR87_RS09125 0.72 -0.4 1,932,134 - ABZR87_RS09125 0.72 +0.0 1,932,169 - ABZR87_RS09125 0.79 -0.2 1,932,277 + -0.6 1,932,277 + +0.0 1,932,277 + -0.7 1,932,277 + -1.5 1,932,281 + +0.4 1,932,281 + -0.1 1,932,281 + +1.0 1,932,281 + +0.6 1,932,281 + +0.0 1,932,282 - +0.1 1,932,341 - +0.2 1,932,347 + -1.2 1,932,354 + -0.9 1,932,354 + -0.8 1,932,354 + -0.5 1,932,355 - -0.2 1,932,355 - -1.3 1,932,355 - -1.0
Or see this region's nucleotide sequence