Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07965

Experiment: rhizosphere sample 4; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere sample 4; outgrowth in LB
1,692,599	+				-0.8
1,692,599	+				-2.4
1,692,599	+				-0.6
1,692,600	-				-1.8
1,692,668	+		ABZR87_RS07960	0.18	-0.4
1,692,668	+		ABZR87_RS07960	0.18	-0.8
1,692,668	+		ABZR87_RS07960	0.18	-1.9
1,692,669	-		ABZR87_RS07960	0.18	-1.0
1,692,669	-		ABZR87_RS07960	0.18	-1.2
1,692,669	-		ABZR87_RS07960	0.18	-0.4
1,692,669	-		ABZR87_RS07960	0.18	-0.9
1,692,669	-		ABZR87_RS07960	0.18	-0.7
1,692,669	-		ABZR87_RS07960	0.18	-1.9
1,692,669	-		ABZR87_RS07960	0.18	-1.0
1,692,669	-		ABZR87_RS07960	0.18	+0.4
1,692,669	-		ABZR87_RS07960	0.18	-1.0
1,692,669	-		ABZR87_RS07960	0.18	-0.9
1,692,820	-		ABZR87_RS07960	0.39	-1.0
1,692,821	+		ABZR87_RS07960	0.39	-0.6
1,692,821	+		ABZR87_RS07960	0.39	+2.2
1,692,821	+		ABZR87_RS07960	0.39	-2.1
1,692,821	+		ABZR87_RS07960	0.39	-0.5
1,692,821	+		ABZR87_RS07960	0.39	-0.8
1,692,821	+		ABZR87_RS07960	0.39	-2.0
1,692,821	+		ABZR87_RS07960	0.39	-1.4
1,692,821	+		ABZR87_RS07960	0.39	-1.0
1,692,821	+		ABZR87_RS07960	0.39	-0.4
1,692,821	+		ABZR87_RS07960	0.39	-1.4
1,692,821	+		ABZR87_RS07960	0.39	-1.6
1,692,821	+		ABZR87_RS07960	0.39	+0.5
1,692,821	+		ABZR87_RS07960	0.39	+0.1
1,692,821	+		ABZR87_RS07960	0.39	-0.4
1,692,821	+		ABZR87_RS07960	0.39	+0.5
1,692,821	+		ABZR87_RS07960	0.39	-0.9
1,692,822	-		ABZR87_RS07960	0.39	-1.1
1,692,822	-		ABZR87_RS07960	0.39	+0.4
1,692,822	-		ABZR87_RS07960	0.39	+0.3
1,692,822	-		ABZR87_RS07960	0.39	-0.1
1,692,822	-		ABZR87_RS07960	0.39	-0.4
1,692,822	-		ABZR87_RS07960	0.39	+0.7
1,692,822	-		ABZR87_RS07960	0.39	-1.5
1,692,953	+		ABZR87_RS07960	0.58	-0.1
1,692,953	+		ABZR87_RS07960	0.58	-1.0
1,692,953	+		ABZR87_RS07960	0.58	+1.2
1,692,953	+		ABZR87_RS07960	0.58	-1.8
1,692,953	+		ABZR87_RS07960	0.58	+0.2
1,692,953	+		ABZR87_RS07960	0.58	-1.3
1,692,953	+		ABZR87_RS07960	0.58	-0.1
1,692,954	-		ABZR87_RS07960	0.58	+0.2
1,692,954	-		ABZR87_RS07960	0.58	-0.2
1,692,954	-		ABZR87_RS07960	0.58	-1.3
1,692,954	-		ABZR87_RS07960	0.58	-0.3
1,692,954	-		ABZR87_RS07960	0.58	-0.3
1,692,954	-		ABZR87_RS07960	0.58	-1.0
1,692,954	-		ABZR87_RS07960	0.58	-0.1
1,693,077	+		ABZR87_RS07960	0.75	-0.3
1,693,078	-		ABZR87_RS07960	0.75	-0.6
1,693,078	-		ABZR87_RS07960	0.75	-0.3
1,693,112	+		ABZR87_RS07960	0.80	-0.7
1,693,112	+		ABZR87_RS07960	0.80	-1.6
1,693,112	+		ABZR87_RS07960	0.80	-0.2
1,693,112	+		ABZR87_RS07960	0.80	-2.7
1,693,112	+		ABZR87_RS07960	0.80	+0.2
1,693,112	+		ABZR87_RS07960	0.80	-0.4
1,693,112	+		ABZR87_RS07960	0.80	+0.1
1,693,112	+		ABZR87_RS07960	0.80	-1.5
1,693,112	+		ABZR87_RS07960	0.80	-0.4
1,693,112	+		ABZR87_RS07960	0.80	-0.3
1,693,112	+		ABZR87_RS07960	0.80	-1.1
1,693,112	+		ABZR87_RS07960	0.80	+1.1
1,693,112	+		ABZR87_RS07960	0.80	-1.6
1,693,113	-		ABZR87_RS07960	0.80	-0.5
1,693,113	-		ABZR87_RS07960	0.80	-0.4
1,693,113	-		ABZR87_RS07960	0.80	-0.5
1,693,181	+		ABZR87_RS07960	0.90	-1.1
1,693,181	+		ABZR87_RS07960	0.90	+0.1
1,693,181	+		ABZR87_RS07960	0.90	-0.8
1,693,181	+		ABZR87_RS07960	0.90	-0.1
1,693,182	-		ABZR87_RS07960	0.90	-1.1
1,693,182	-		ABZR87_RS07960	0.90	-2.2
1,693,304	+				-1.2
1,693,304	+				-0.5
1,693,305	-				-0.4
1,693,366	+				-0.2
1,693,387	+				-1.6
1,693,387	+				-0.8
1,693,387	+				-0.3
1,693,387	+				-1.1
1,693,388	-				-0.8
1,693,388	-				-0.1
1,693,388	-				+1.3
1,693,492	+				+0.1
1,693,492	+				-0.6
1,693,492	+				-1.4
1,693,492	+				-0.7
1,693,493	-				+1.9
1,693,493	-				+1.1
1,693,493	-				+0.3
1,693,493	-				+2.2
1,693,493	-				-0.7
1,693,494	+				-1.0
1,693,494	+				-0.7
1,693,494	+				-0.7
1,693,494	+				+0.1
1,693,495	-				+1.0
1,693,495	-				-0.5
1,693,495	-				-0.5
1,693,531	+				+0.4
1,693,531	+				+0.8
1,693,531	+				+0.3
1,693,736	+		ABZR87_RS07965	0.20	+1.5
1,693,737	-		ABZR87_RS07965	0.20	+0.2
1,693,756	+		ABZR87_RS07965	0.22	+0.6
1,693,757	-		ABZR87_RS07965	0.22	+0.7
1,693,757	-		ABZR87_RS07965	0.22	-0.9
1,694,150	+		ABZR87_RS07965	0.59	-0.0
1,694,196	-		ABZR87_RS07965	0.64	-0.5
1,694,196	-		ABZR87_RS07965	0.64	+0.6
1,694,333	+		ABZR87_RS07965	0.77	-0.6
1,694,333	+		ABZR87_RS07965	0.77	+1.1
1,694,420	+		ABZR87_RS07965	0.85	+0.6
1,694,420	+		ABZR87_RS07965	0.85	-0.0
1,694,420	+		ABZR87_RS07965	0.85	+1.3
1,694,420	+		ABZR87_RS07965	0.85	-0.3
1,694,420	+		ABZR87_RS07965	0.85	+0.5
1,694,420	+		ABZR87_RS07965	0.85	-0.6
1,694,421	-		ABZR87_RS07965	0.85	-0.7
1,694,421	-		ABZR87_RS07965	0.85	+2.1
1,694,421	-		ABZR87_RS07965	0.85	+2.2
1,694,421	-		ABZR87_RS07965	0.85	+0.0
1,694,421	-		ABZR87_RS07965	0.85	-0.3
1,694,465	+		ABZR87_RS07965	0.89	+2.8
1,694,465	+		ABZR87_RS07965	0.89	-0.6
1,694,465	+		ABZR87_RS07965	0.89	-1.3
1,694,466	-		ABZR87_RS07965	0.89	-0.7
1,694,466	-		ABZR87_RS07965	0.89	+1.3
1,694,576	+				-0.3
1,694,576	+				-0.1
1,694,577	-				-1.1
1,694,577	-				+0.0
1,694,612	-				-0.2
1,694,612	-				-0.9
1,694,623	+				+1.1
1,694,624	-				+0.2
1,694,624	-				+1.0
1,694,624	-				-0.1
1,694,624	-				+0.1
1,694,624	-				+0.5
1,694,672	+				+1.7
1,694,672	+				+1.1
1,694,673	-				+0.9
1,694,673	-				+0.2
1,694,673	-				-0.5
1,694,721	+		ABZR87_RS07970	0.10	-0.7
1,694,722	-		ABZR87_RS07970	0.10	-1.5
1,694,722	-		ABZR87_RS07970	0.10	-0.2
1,694,722	-		ABZR87_RS07970	0.10	-0.8
1,694,722	-		ABZR87_RS07970	0.10	+1.1
1,694,725	+		ABZR87_RS07970	0.11	-0.9
1,694,725	+		ABZR87_RS07970	0.11	-0.2
1,694,726	-		ABZR87_RS07970	0.11	+0.5
1,694,726	-		ABZR87_RS07970	0.11	-0.2
1,694,726	-		ABZR87_RS07970	0.11	-1.7
1,694,726	-		ABZR87_RS07970	0.11	+0.0
1,694,726	-		ABZR87_RS07970	0.11	+1.2
1,694,726	-		ABZR87_RS07970	0.11	+0.1
1,694,726	-		ABZR87_RS07970	0.11	-0.5
1,694,741	+		ABZR87_RS07970	0.14	-0.8
1,694,741	+		ABZR87_RS07970	0.14	-1.6
1,694,741	+		ABZR87_RS07970	0.14	-0.5
1,694,741	+		ABZR87_RS07970	0.14	-0.3
1,694,741	+		ABZR87_RS07970	0.14	+0.2
1,694,742	-		ABZR87_RS07970	0.14	+0.4
1,694,742	-		ABZR87_RS07970	0.14	-0.4
1,694,762	+		ABZR87_RS07970	0.19	-0.2
1,694,844	-		ABZR87_RS07970	0.36	-0.7
1,694,844	-		ABZR87_RS07970	0.36	-1.0
1,694,844	-		ABZR87_RS07970	0.36	-0.7
1,694,972	+		ABZR87_RS07970	0.62	+0.4
1,695,060	+		ABZR87_RS07970	0.81	+0.3
1,695,060	+		ABZR87_RS07970	0.81	+0.9
1,695,060	+		ABZR87_RS07970	0.81	+1.2
1,695,060	+		ABZR87_RS07970	0.81	-0.4
1,695,060	+		ABZR87_RS07970	0.81	-0.1
1,695,060	+		ABZR87_RS07970	0.81	+1.8
1,695,060	+		ABZR87_RS07970	0.81	-1.4
1,695,060	+		ABZR87_RS07970	0.81	-2.1
1,695,060	+		ABZR87_RS07970	0.81	-1.2
1,695,061	-		ABZR87_RS07970	0.81	-0.3
1,695,061	-		ABZR87_RS07970	0.81	-0.3
1,695,061	-		ABZR87_RS07970	0.81	-2.3
1,695,061	-		ABZR87_RS07970	0.81	+0.4
1,695,061	-		ABZR87_RS07970	0.81	-0.8
1,695,061	-		ABZR87_RS07970	0.81	-0.6
1,695,061	-		ABZR87_RS07970	0.81	+0.1
1,695,341	+				-0.4
1,695,341	+				-0.9
1,695,341	+				+0.2
1,695,341	+				-0.6
1,695,375	+				-0.3
1,695,375	+				-0.4
1,695,375	+				+0.1
1,695,375	+				-0.1
1,695,375	+				+0.1
1,695,375	+				-0.3
1,695,426	+				+0.0
1,695,507	+		ABZR87_RS07975	0.10	-0.7
1,695,569	+		ABZR87_RS07975	0.20	-0.4