Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02565

Experiment: rhizosphere sample 4; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02560 and ABZR87_RS02565 are separated by 175 nucleotidesABZR87_RS02565 and ABZR87_RS02570 are separated by 140 nucleotides ABZR87_RS02560: ABZR87_RS02560 - tripartite tricarboxylate transporter substrate binding protein, at 539,953 to 540,984 _RS02560 ABZR87_RS02565: ABZR87_RS02565 - glutamate synthase subunit beta, at 541,160 to 542,623 _RS02565 ABZR87_RS02570: ABZR87_RS02570 - glutamate synthase-related protein, at 542,764 to 547,485 _RS02570 Position (kb) 541 542 543Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 540.317 kb on + strand, within ABZR87_RS02560at 540.410 kb on + strand, within ABZR87_RS02560at 540.410 kb on + strand, within ABZR87_RS02560at 540.411 kb on - strand, within ABZR87_RS02560at 540.411 kb on - strand, within ABZR87_RS02560at 540.411 kb on - strand, within ABZR87_RS02560at 540.608 kb on + strand, within ABZR87_RS02560at 540.608 kb on + strand, within ABZR87_RS02560at 540.609 kb on - strand, within ABZR87_RS02560at 540.609 kb on - strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.667 kb on - strand, within ABZR87_RS02560at 540.667 kb on - strand, within ABZR87_RS02560at 540.667 kb on - strand, within ABZR87_RS02560at 540.667 kb on - strand, within ABZR87_RS02560at 540.667 kb on - strand, within ABZR87_RS02560at 540.736 kb on + strand, within ABZR87_RS02560at 540.736 kb on + strand, within ABZR87_RS02560at 540.736 kb on + strand, within ABZR87_RS02560at 540.737 kb on - strand, within ABZR87_RS02560at 540.737 kb on - strand, within ABZR87_RS02560at 540.737 kb on - strand, within ABZR87_RS02560at 540.837 kb on + strand, within ABZR87_RS02560at 540.837 kb on + strand, within ABZR87_RS02560at 540.837 kb on + strand, within ABZR87_RS02560at 540.838 kb on - strand, within ABZR87_RS02560at 541.019 kb on + strandat 541.019 kb on + strandat 541.020 kb on - strandat 541.020 kb on - strandat 541.050 kb on + strandat 541.050 kb on + strandat 541.051 kb on - strandat 541.051 kb on - strandat 541.051 kb on - strandat 541.051 kb on - strandat 541.065 kb on + strandat 541.065 kb on + strandat 541.066 kb on - strandat 541.302 kb on + strandat 541.393 kb on + strand, within ABZR87_RS02565at 541.393 kb on + strand, within ABZR87_RS02565at 541.393 kb on + strand, within ABZR87_RS02565at 541.394 kb on - strand, within ABZR87_RS02565at 541.394 kb on - strand, within ABZR87_RS02565at 541.602 kb on + strand, within ABZR87_RS02565at 541.602 kb on + strand, within ABZR87_RS02565at 541.819 kb on - strand, within ABZR87_RS02565at 541.819 kb on - strand, within ABZR87_RS02565at 542.074 kb on - strand, within ABZR87_RS02565at 542.409 kb on + strand, within ABZR87_RS02565at 542.409 kb on + strand, within ABZR87_RS02565at 542.410 kb on - strand, within ABZR87_RS02565at 542.544 kb on + strandat 542.544 kb on + strandat 542.544 kb on + strandat 542.544 kb on + strandat 542.544 kb on + strandat 542.544 kb on + strandat 542.545 kb on - strandat 542.574 kb on + strandat 542.574 kb on + strandat 542.574 kb on + strandat 542.574 kb on + strandat 542.574 kb on + strandat 542.574 kb on + strandat 542.574 kb on + strandat 542.575 kb on - strandat 542.575 kb on - strandat 542.706 kb on + strandat 542.706 kb on + strandat 542.706 kb on + strandat 542.706 kb on + strandat 542.707 kb on - strandat 542.707 kb on - strandat 542.807 kb on + strandat 542.807 kb on + strandat 542.807 kb on + strandat 542.807 kb on + strandat 542.808 kb on - strandat 542.808 kb on - strandat 542.808 kb on - strandat 542.808 kb on - strandat 542.808 kb on - strandat 542.808 kb on - strandat 542.808 kb on - strandat 542.831 kb on + strandat 542.831 kb on + strandat 542.832 kb on - strandat 542.916 kb on - strandat 543.092 kb on + strandat 543.092 kb on + strandat 543.092 kb on + strandat 543.093 kb on - strandat 543.093 kb on - strandat 543.098 kb on + strandat 543.099 kb on - strandat 543.099 kb on - strandat 543.099 kb on - strandat 543.176 kb on + strandat 543.176 kb on + strandat 543.176 kb on + strandat 543.176 kb on + strandat 543.176 kb on + strandat 543.176 kb on + strandat 543.176 kb on + strandat 543.176 kb on + strandat 543.177 kb on - strandat 543.177 kb on - strandat 543.177 kb on - strandat 543.177 kb on - strandat 543.392 kb on + strand, within ABZR87_RS02570at 543.392 kb on + strand, within ABZR87_RS02570at 543.392 kb on + strand, within ABZR87_RS02570at 543.392 kb on + strand, within ABZR87_RS02570at 543.392 kb on + strand, within ABZR87_RS02570at 543.392 kb on + strand, within ABZR87_RS02570at 543.392 kb on + strand, within ABZR87_RS02570at 543.392 kb on + strand, within ABZR87_RS02570at 543.393 kb on - strand, within ABZR87_RS02570

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 4; outgrowth in LB
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540,317 + ABZR87_RS02560 0.35 -0.4
540,410 + ABZR87_RS02560 0.44 +0.9
540,410 + ABZR87_RS02560 0.44 +0.0
540,411 - ABZR87_RS02560 0.44 +1.0
540,411 - ABZR87_RS02560 0.44 -1.0
540,411 - ABZR87_RS02560 0.44 +0.2
540,608 + ABZR87_RS02560 0.63 -0.2
540,608 + ABZR87_RS02560 0.63 +1.6
540,609 - ABZR87_RS02560 0.64 -0.1
540,609 - ABZR87_RS02560 0.64 +0.0
540,666 + ABZR87_RS02560 0.69 +0.8
540,666 + ABZR87_RS02560 0.69 -0.1
540,666 + ABZR87_RS02560 0.69 -0.4
540,666 + ABZR87_RS02560 0.69 +1.2
540,666 + ABZR87_RS02560 0.69 +1.1
540,666 + ABZR87_RS02560 0.69 -1.1
540,666 + ABZR87_RS02560 0.69 +0.3
540,666 + ABZR87_RS02560 0.69 +0.9
540,666 + ABZR87_RS02560 0.69 -0.2
540,666 + ABZR87_RS02560 0.69 -0.5
540,666 + ABZR87_RS02560 0.69 +0.6
540,666 + ABZR87_RS02560 0.69 -0.7
540,666 + ABZR87_RS02560 0.69 -0.1
540,667 - ABZR87_RS02560 0.69 +1.0
540,667 - ABZR87_RS02560 0.69 +0.6
540,667 - ABZR87_RS02560 0.69 +0.7
540,667 - ABZR87_RS02560 0.69 +2.9
540,667 - ABZR87_RS02560 0.69 -0.7
540,736 + ABZR87_RS02560 0.76 -0.4
540,736 + ABZR87_RS02560 0.76 +0.7
540,736 + ABZR87_RS02560 0.76 +0.1
540,737 - ABZR87_RS02560 0.76 +0.3
540,737 - ABZR87_RS02560 0.76 -0.4
540,737 - ABZR87_RS02560 0.76 -0.6
540,837 + ABZR87_RS02560 0.86 +0.6
540,837 + ABZR87_RS02560 0.86 +1.4
540,837 + ABZR87_RS02560 0.86 +1.2
540,838 - ABZR87_RS02560 0.86 +1.0
541,019 + +0.7
541,019 + +0.4
541,020 - +0.1
541,020 - +0.1
541,050 + -1.2
541,050 + -0.7
541,051 - -0.5
541,051 - +0.9
541,051 - -0.2
541,051 - -0.3
541,065 + +0.1
541,065 + +0.8
541,066 - -2.4
541,302 + -2.1
541,393 + ABZR87_RS02565 0.16 +2.0
541,393 + ABZR87_RS02565 0.16 -2.3
541,393 + ABZR87_RS02565 0.16 +0.2
541,394 - ABZR87_RS02565 0.16 -1.0
541,394 - ABZR87_RS02565 0.16 +0.4
541,602 + ABZR87_RS02565 0.30 -3.0
541,602 + ABZR87_RS02565 0.30 -1.1
541,819 - ABZR87_RS02565 0.45 -0.2
541,819 - ABZR87_RS02565 0.45 -2.0
542,074 - ABZR87_RS02565 0.62 -0.3
542,409 + ABZR87_RS02565 0.85 -1.1
542,409 + ABZR87_RS02565 0.85 -3.4
542,410 - ABZR87_RS02565 0.85 -1.3
542,544 + -0.4
542,544 + -2.9
542,544 + -2.4
542,544 + -2.1
542,544 + -2.5
542,544 + -0.9
542,545 - -0.8
542,574 + -0.0
542,574 + -1.0
542,574 + +2.9
542,574 + +3.3
542,574 + -1.8
542,574 + -1.7
542,574 + -2.1
542,575 - -0.6
542,575 - +0.3
542,706 + +1.5
542,706 + -1.1
542,706 + +0.2
542,706 + -1.7
542,707 - +1.6
542,707 - +0.3
542,807 + -2.2
542,807 + -1.0
542,807 + -1.9
542,807 + -0.2
542,808 - +0.8
542,808 - -0.4
542,808 - +0.5
542,808 - -0.3
542,808 - +0.3
542,808 - +0.4
542,808 - -0.1
542,831 + -3.0
542,831 + -1.6
542,832 - +1.0
542,916 - +1.9
543,092 + -0.8
543,092 + -1.8
543,092 + -2.8
543,093 - -1.9
543,093 - -1.8
543,098 + -2.0
543,099 - +0.4
543,099 - -1.3
543,099 - -0.8
543,176 + -2.9
543,176 + -2.0
543,176 + -0.6
543,176 + -1.6
543,176 + +1.3
543,176 + +1.3
543,176 + -1.4
543,176 + -0.9
543,177 - -0.6
543,177 - +1.7
543,177 - -2.6
543,177 - -0.5
543,392 + ABZR87_RS02570 0.13 -1.8
543,392 + ABZR87_RS02570 0.13 -1.4
543,392 + ABZR87_RS02570 0.13 -0.7
543,392 + ABZR87_RS02570 0.13 -2.0
543,392 + ABZR87_RS02570 0.13 +1.9
543,392 + ABZR87_RS02570 0.13 -1.4
543,392 + ABZR87_RS02570 0.13 -0.2
543,392 + ABZR87_RS02570 0.13 -1.5
543,393 - ABZR87_RS02570 0.13 -1.7

Or see this region's nucleotide sequence