Experiment: rhizosphere sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02235 and ABZR87_RS02240 are separated by 31 nucleotides ABZR87_RS02240 and ABZR87_RS02245 are separated by 231 nucleotides
ABZR87_RS02235: ABZR87_RS02235 - response regulator, at 479,388 to 481,346
_RS02235
ABZR87_RS02240: ABZR87_RS02240 - GlsB/YeaQ/YmgE family stress response membrane protein, at 481,378 to 481,620
_RS02240
ABZR87_RS02245: ABZR87_RS02245 - glutamyl-tRNA reductase, at 481,852 to 483,159
_RS02245
Position (kb) 481
482 Strain fitness (log2 ratio) -2
-1
0
1
2 at 480.451 kb on - strand, within ABZR87_RS02235 at 480.549 kb on + strand, within ABZR87_RS02235 at 480.549 kb on + strand, within ABZR87_RS02235 at 480.549 kb on + strand, within ABZR87_RS02235 at 480.549 kb on + strand, within ABZR87_RS02235 at 480.550 kb on - strand, within ABZR87_RS02235 at 480.802 kb on - strand, within ABZR87_RS02235 at 480.976 kb on + strand, within ABZR87_RS02235 at 480.977 kb on - strand, within ABZR87_RS02235 at 480.977 kb on - strand, within ABZR87_RS02235 at 480.977 kb on - strand, within ABZR87_RS02235 at 480.977 kb on - strand, within ABZR87_RS02235 at 481.113 kb on - strand, within ABZR87_RS02235 at 481.153 kb on + strand at 481.153 kb on + strand at 481.154 kb on - strand at 481.202 kb on + strand at 481.202 kb on + strand at 481.202 kb on + strand at 481.202 kb on + strand at 481.299 kb on + strand at 481.300 kb on - strand at 481.379 kb on + strand at 481.380 kb on - strand at 481.463 kb on + strand, within ABZR87_RS02240 at 481.463 kb on + strand, within ABZR87_RS02240 at 481.463 kb on + strand, within ABZR87_RS02240 at 481.464 kb on - strand, within ABZR87_RS02240 at 481.487 kb on + strand, within ABZR87_RS02240 at 481.487 kb on + strand, within ABZR87_RS02240 at 481.487 kb on + strand, within ABZR87_RS02240 at 481.487 kb on + strand, within ABZR87_RS02240 at 481.487 kb on + strand, within ABZR87_RS02240 at 481.487 kb on + strand, within ABZR87_RS02240 at 481.487 kb on + strand, within ABZR87_RS02240 at 481.488 kb on - strand, within ABZR87_RS02240 at 481.488 kb on - strand, within ABZR87_RS02240 at 481.488 kb on - strand, within ABZR87_RS02240 at 481.488 kb on - strand, within ABZR87_RS02240 at 481.488 kb on - strand, within ABZR87_RS02240 at 481.490 kb on + strand, within ABZR87_RS02240 at 481.490 kb on + strand, within ABZR87_RS02240 at 481.633 kb on + strand at 481.634 kb on - strand at 481.663 kb on + strand at 481.663 kb on + strand at 481.663 kb on + strand at 481.663 kb on + strand at 481.663 kb on + strand at 481.664 kb on - strand at 481.664 kb on - strand at 481.664 kb on - strand at 481.668 kb on + strand at 481.669 kb on - strand at 481.723 kb on + strand at 481.755 kb on + strand at 481.755 kb on + strand at 481.755 kb on + strand at 481.755 kb on + strand at 481.755 kb on + strand at 481.755 kb on + strand at 481.755 kb on + strand at 481.755 kb on + strand at 481.755 kb on + strand at 481.755 kb on + strand at 481.755 kb on + strand at 481.756 kb on - strand at 481.756 kb on - strand at 481.756 kb on - strand at 481.756 kb on - strand at 481.756 kb on - strand at 481.756 kb on - strand at 481.756 kb on - strand at 481.801 kb on + strand at 481.802 kb on - strand at 481.802 kb on - strand at 481.802 kb on - strand at 481.802 kb on - strand at 481.802 kb on - strand at 481.802 kb on - strand at 481.803 kb on + strand at 481.803 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 4; outgrowth in LB remove 480,451 - ABZR87_RS02235 0.54 +0.1 480,549 + ABZR87_RS02235 0.59 -1.3 480,549 + ABZR87_RS02235 0.59 -0.1 480,549 + ABZR87_RS02235 0.59 -1.5 480,549 + ABZR87_RS02235 0.59 -0.3 480,550 - ABZR87_RS02235 0.59 -0.4 480,802 - ABZR87_RS02235 0.72 +0.0 480,976 + ABZR87_RS02235 0.81 +0.0 480,977 - ABZR87_RS02235 0.81 +0.6 480,977 - ABZR87_RS02235 0.81 -1.3 480,977 - ABZR87_RS02235 0.81 -0.9 480,977 - ABZR87_RS02235 0.81 -0.1 481,113 - ABZR87_RS02235 0.88 +0.8 481,153 + +0.5 481,153 + -1.7 481,154 - +0.5 481,202 + -0.7 481,202 + -1.2 481,202 + -0.1 481,202 + -0.3 481,299 + -0.5 481,300 - +2.0 481,379 + -0.6 481,380 - +0.5 481,463 + ABZR87_RS02240 0.35 -0.6 481,463 + ABZR87_RS02240 0.35 -1.7 481,463 + ABZR87_RS02240 0.35 -1.1 481,464 - ABZR87_RS02240 0.35 -0.7 481,487 + ABZR87_RS02240 0.45 -1.3 481,487 + ABZR87_RS02240 0.45 +0.1 481,487 + ABZR87_RS02240 0.45 -0.5 481,487 + ABZR87_RS02240 0.45 -0.6 481,487 + ABZR87_RS02240 0.45 +0.5 481,487 + ABZR87_RS02240 0.45 -0.4 481,487 + ABZR87_RS02240 0.45 -2.0 481,488 - ABZR87_RS02240 0.45 +0.2 481,488 - ABZR87_RS02240 0.45 +0.6 481,488 - ABZR87_RS02240 0.45 -0.5 481,488 - ABZR87_RS02240 0.45 -0.7 481,488 - ABZR87_RS02240 0.45 +0.6 481,490 + ABZR87_RS02240 0.46 -0.1 481,490 + ABZR87_RS02240 0.46 -0.5 481,633 + -0.4 481,634 - +1.2 481,663 + -0.3 481,663 + +1.1 481,663 + +0.7 481,663 + -2.4 481,663 + +0.3 481,664 - +0.2 481,664 - +0.2 481,664 - +0.4 481,668 + -0.3 481,669 - -1.1 481,723 + -1.1 481,755 + +0.2 481,755 + +0.3 481,755 + -0.3 481,755 + -0.0 481,755 + +0.5 481,755 + -0.2 481,755 + -0.5 481,755 + +1.0 481,755 + +1.4 481,755 + +0.3 481,755 + +0.1 481,756 - -1.2 481,756 - -0.6 481,756 - +0.3 481,756 - +0.6 481,756 - +0.2 481,756 - -0.9 481,756 - +0.4 481,801 + +0.2 481,802 - +1.3 481,802 - -0.2 481,802 - +1.3 481,802 - +1.0 481,802 - -0.3 481,802 - +0.6 481,803 + +0.3 481,803 + +0.9
Or see this region's nucleotide sequence