Experiment: rhizosphere sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01690 and ABZR87_RS01695 are separated by 132 nucleotides ABZR87_RS01695 and ABZR87_RS01700 are separated by 66 nucleotides ABZR87_RS01700 and ABZR87_RS01705 are separated by 325 nucleotides
ABZR87_RS01690: ABZR87_RS01690 - collagen-like triple helix repeat-containing protein, at 354,942 to 355,742
_RS01690
ABZR87_RS01695: ABZR87_RS01695 - collagen-like triple helix repeat-containing protein, at 355,875 to 357,032
_RS01695
ABZR87_RS01700: ABZR87_RS01700 - DUF2147 domain-containing protein, at 357,099 to 357,554
_RS01700
ABZR87_RS01705: ABZR87_RS01705 - hypothetical protein, at 357,880 to 359,220
_RS01705
Position (kb) 355
356
357
358 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 354.927 kb on + strand at 354.928 kb on - strand at 355.505 kb on + strand, within ABZR87_RS01690 at 355.679 kb on + strand at 355.679 kb on + strand at 355.679 kb on + strand at 355.679 kb on + strand at 355.679 kb on + strand at 355.740 kb on + strand at 355.741 kb on - strand at 355.741 kb on - strand at 355.741 kb on - strand at 355.741 kb on - strand at 355.741 kb on - strand at 355.754 kb on + strand at 355.755 kb on - strand at 355.755 kb on - strand at 355.795 kb on + strand at 355.839 kb on + strand at 355.859 kb on + strand at 355.859 kb on + strand at 355.860 kb on - strand at 355.860 kb on - strand at 355.860 kb on - strand at 355.860 kb on - strand at 355.860 kb on - strand at 356.015 kb on + strand, within ABZR87_RS01695 at 356.015 kb on + strand, within ABZR87_RS01695 at 356.015 kb on + strand, within ABZR87_RS01695 at 356.016 kb on - strand, within ABZR87_RS01695 at 356.016 kb on - strand, within ABZR87_RS01695 at 356.016 kb on - strand, within ABZR87_RS01695 at 356.016 kb on - strand, within ABZR87_RS01695 at 356.016 kb on - strand, within ABZR87_RS01695 at 356.016 kb on - strand, within ABZR87_RS01695 at 356.622 kb on - strand, within ABZR87_RS01695 at 356.622 kb on - strand, within ABZR87_RS01695 at 357.107 kb on + strand at 357.107 kb on + strand at 357.107 kb on + strand at 357.108 kb on - strand at 357.108 kb on - strand at 357.108 kb on - strand at 357.108 kb on - strand at 357.108 kb on - strand at 357.108 kb on - strand at 357.447 kb on + strand, within ABZR87_RS01700 at 357.448 kb on - strand, within ABZR87_RS01700 at 357.576 kb on + strand at 357.576 kb on + strand at 357.665 kb on - strand at 357.665 kb on - strand at 357.702 kb on - strand at 357.725 kb on + strand at 357.725 kb on + strand at 357.836 kb on + strand at 357.836 kb on + strand at 357.836 kb on + strand at 357.836 kb on + strand at 357.836 kb on + strand at 357.836 kb on + strand at 357.836 kb on + strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.837 kb on - strand at 357.859 kb on + strand at 357.860 kb on - strand at 357.875 kb on + strand at 357.949 kb on + strand at 357.949 kb on + strand at 357.949 kb on + strand at 357.949 kb on + strand at 357.950 kb on - strand at 357.950 kb on - strand at 357.950 kb on - strand at 357.950 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 4; outgrowth in LB remove 354,927 + -2.3 354,928 - +1.5 355,505 + ABZR87_RS01690 0.70 -0.8 355,679 + -1.1 355,679 + -0.3 355,679 + -0.8 355,679 + -0.8 355,679 + +0.8 355,740 + +0.5 355,741 - +1.0 355,741 - -0.9 355,741 - +0.0 355,741 - +2.3 355,741 - -0.1 355,754 + -1.1 355,755 - +0.4 355,755 - +1.3 355,795 + +0.7 355,839 + +0.4 355,859 + -0.0 355,859 + -0.7 355,860 - -0.3 355,860 - -0.8 355,860 - +1.4 355,860 - +2.4 355,860 - -0.9 356,015 + ABZR87_RS01695 0.12 -0.1 356,015 + ABZR87_RS01695 0.12 +1.8 356,015 + ABZR87_RS01695 0.12 -0.5 356,016 - ABZR87_RS01695 0.12 +0.3 356,016 - ABZR87_RS01695 0.12 +1.2 356,016 - ABZR87_RS01695 0.12 +0.8 356,016 - ABZR87_RS01695 0.12 -1.2 356,016 - ABZR87_RS01695 0.12 +1.0 356,016 - ABZR87_RS01695 0.12 +0.6 356,622 - ABZR87_RS01695 0.65 +0.4 356,622 - ABZR87_RS01695 0.65 -0.7 357,107 + +0.3 357,107 + -1.6 357,107 + -0.2 357,108 - +0.2 357,108 - +0.3 357,108 - +1.5 357,108 - +0.7 357,108 - +0.7 357,108 - +0.2 357,447 + ABZR87_RS01700 0.76 +0.1 357,448 - ABZR87_RS01700 0.77 +1.0 357,576 + -1.5 357,576 + -1.0 357,665 - +0.7 357,665 - -0.9 357,702 - -0.7 357,725 + +0.7 357,725 + +0.3 357,836 + -0.7 357,836 + -0.4 357,836 + +0.9 357,836 + -0.2 357,836 + +0.8 357,836 + -0.7 357,836 + -1.5 357,837 - +0.3 357,837 - +0.6 357,837 - -0.0 357,837 - +0.3 357,837 - +0.2 357,837 - -0.1 357,837 - +0.9 357,837 - -1.2 357,837 - -0.7 357,837 - +0.2 357,837 - -0.5 357,859 + +3.4 357,860 - -0.9 357,875 + +0.8 357,949 + +0.5 357,949 + -0.3 357,949 + -0.5 357,949 + +1.1 357,950 - -0.6 357,950 - -0.1 357,950 - +0.1 357,950 - +1.6
Or see this region's nucleotide sequence