Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01305

Experiment: rhizosphere sample 4; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01295 and ABZR87_RS01300 are separated by 99 nucleotidesABZR87_RS01300 and ABZR87_RS01305 are separated by 63 nucleotidesABZR87_RS01305 and ABZR87_RS01310 are separated by 99 nucleotidesABZR87_RS01310 and ABZR87_RS01315 are separated by 263 nucleotides ABZR87_RS01295: ABZR87_RS01295 - protein translocase subunit SecF, at 270,485 to 271,456 _RS01295 ABZR87_RS01300: ABZR87_RS01300 - YceI family protein, at 271,556 to 272,152 _RS01300 ABZR87_RS01305: ABZR87_RS01305 - YceI family protein, at 272,216 to 272,788 _RS01305 ABZR87_RS01310: ABZR87_RS01310 - cytochrome b, at 272,888 to 273,469 _RS01310 ABZR87_RS01315: ABZR87_RS01315 - adenylosuccinate lyase, at 273,733 to 275,106 _RS01315 Position (kb) 272 273Strain fitness (log2 ratio) -2 -1 0 1 2 3at 271.534 kb on + strandat 271.557 kb on + strandat 271.557 kb on + strandat 271.558 kb on - strandat 271.632 kb on + strand, within ABZR87_RS01300at 271.632 kb on + strand, within ABZR87_RS01300at 271.632 kb on + strand, within ABZR87_RS01300at 271.633 kb on - strand, within ABZR87_RS01300at 271.633 kb on - strand, within ABZR87_RS01300at 271.645 kb on - strand, within ABZR87_RS01300at 271.854 kb on + strand, within ABZR87_RS01300at 271.854 kb on + strand, within ABZR87_RS01300at 271.855 kb on - strand, within ABZR87_RS01300at 271.855 kb on - strand, within ABZR87_RS01300at 272.059 kb on + strand, within ABZR87_RS01300at 272.059 kb on + strand, within ABZR87_RS01300at 272.059 kb on + strand, within ABZR87_RS01300at 272.059 kb on + strand, within ABZR87_RS01300at 272.059 kb on + strand, within ABZR87_RS01300at 272.059 kb on + strand, within ABZR87_RS01300at 272.059 kb on + strand, within ABZR87_RS01300at 272.059 kb on + strand, within ABZR87_RS01300at 272.059 kb on + strand, within ABZR87_RS01300at 272.060 kb on - strand, within ABZR87_RS01300at 272.060 kb on - strand, within ABZR87_RS01300at 272.060 kb on - strand, within ABZR87_RS01300at 272.060 kb on - strand, within ABZR87_RS01300at 272.060 kb on - strand, within ABZR87_RS01300at 272.060 kb on - strand, within ABZR87_RS01300at 272.060 kb on - strand, within ABZR87_RS01300at 272.060 kb on - strand, within ABZR87_RS01300at 272.080 kb on - strand, within ABZR87_RS01300at 272.080 kb on - strand, within ABZR87_RS01300at 272.080 kb on - strand, within ABZR87_RS01300at 272.083 kb on + strand, within ABZR87_RS01300at 272.084 kb on - strand, within ABZR87_RS01300at 272.108 kb on - strandat 272.141 kb on - strandat 272.217 kb on + strandat 272.275 kb on + strand, within ABZR87_RS01305at 272.276 kb on - strand, within ABZR87_RS01305at 272.276 kb on - strand, within ABZR87_RS01305at 272.276 kb on - strand, within ABZR87_RS01305at 272.276 kb on - strand, within ABZR87_RS01305at 272.276 kb on - strand, within ABZR87_RS01305at 272.526 kb on + strand, within ABZR87_RS01305at 272.526 kb on + strand, within ABZR87_RS01305at 272.526 kb on + strand, within ABZR87_RS01305at 272.527 kb on - strand, within ABZR87_RS01305at 272.604 kb on + strand, within ABZR87_RS01305at 272.604 kb on + strand, within ABZR87_RS01305at 272.605 kb on - strand, within ABZR87_RS01305at 272.605 kb on - strand, within ABZR87_RS01305at 272.605 kb on - strand, within ABZR87_RS01305at 272.605 kb on - strand, within ABZR87_RS01305at 272.721 kb on - strand, within ABZR87_RS01305at 273.078 kb on + strand, within ABZR87_RS01310at 273.078 kb on + strand, within ABZR87_RS01310at 273.078 kb on + strand, within ABZR87_RS01310at 273.078 kb on + strand, within ABZR87_RS01310at 273.079 kb on - strand, within ABZR87_RS01310at 273.079 kb on - strand, within ABZR87_RS01310at 273.079 kb on - strand, within ABZR87_RS01310at 273.079 kb on - strand, within ABZR87_RS01310at 273.079 kb on - strand, within ABZR87_RS01310at 273.114 kb on + strand, within ABZR87_RS01310at 273.114 kb on + strand, within ABZR87_RS01310at 273.147 kb on + strand, within ABZR87_RS01310at 273.147 kb on + strand, within ABZR87_RS01310at 273.148 kb on - strand, within ABZR87_RS01310at 273.148 kb on - strand, within ABZR87_RS01310at 273.148 kb on - strand, within ABZR87_RS01310at 273.148 kb on - strand, within ABZR87_RS01310at 273.148 kb on - strand, within ABZR87_RS01310at 273.148 kb on - strand, within ABZR87_RS01310at 273.288 kb on + strand, within ABZR87_RS01310at 273.288 kb on + strand, within ABZR87_RS01310at 273.289 kb on - strand, within ABZR87_RS01310at 273.289 kb on - strand, within ABZR87_RS01310at 273.316 kb on + strand, within ABZR87_RS01310at 273.316 kb on + strand, within ABZR87_RS01310at 273.317 kb on - strand, within ABZR87_RS01310at 273.339 kb on + strand, within ABZR87_RS01310at 273.339 kb on + strand, within ABZR87_RS01310at 273.339 kb on + strand, within ABZR87_RS01310at 273.339 kb on + strand, within ABZR87_RS01310at 273.339 kb on + strand, within ABZR87_RS01310at 273.339 kb on + strand, within ABZR87_RS01310at 273.339 kb on + strand, within ABZR87_RS01310at 273.339 kb on + strand, within ABZR87_RS01310at 273.340 kb on - strand, within ABZR87_RS01310at 273.340 kb on - strand, within ABZR87_RS01310at 273.340 kb on - strand, within ABZR87_RS01310at 273.340 kb on - strand, within ABZR87_RS01310at 273.340 kb on - strand, within ABZR87_RS01310at 273.340 kb on - strand, within ABZR87_RS01310at 273.340 kb on - strand, within ABZR87_RS01310at 273.409 kb on + strand, within ABZR87_RS01310at 273.409 kb on + strand, within ABZR87_RS01310at 273.410 kb on - strand, within ABZR87_RS01310at 273.410 kb on - strand, within ABZR87_RS01310at 273.411 kb on + strandat 273.482 kb on + strandat 273.545 kb on + strandat 273.545 kb on + strandat 273.545 kb on + strandat 273.546 kb on - strandat 273.546 kb on - strandat 273.546 kb on - strandat 273.546 kb on - strandat 273.655 kb on + strandat 273.711 kb on + strandat 273.742 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 4; outgrowth in LB
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271,534 + -1.3
271,557 + -0.7
271,557 + -1.2
271,558 - -0.1
271,632 + ABZR87_RS01300 0.13 -0.6
271,632 + ABZR87_RS01300 0.13 +0.2
271,632 + ABZR87_RS01300 0.13 +0.1
271,633 - ABZR87_RS01300 0.13 -0.7
271,633 - ABZR87_RS01300 0.13 -0.2
271,645 - ABZR87_RS01300 0.15 -0.8
271,854 + ABZR87_RS01300 0.50 +0.7
271,854 + ABZR87_RS01300 0.50 -0.4
271,855 - ABZR87_RS01300 0.50 -0.9
271,855 - ABZR87_RS01300 0.50 +0.1
272,059 + ABZR87_RS01300 0.84 +2.1
272,059 + ABZR87_RS01300 0.84 -0.1
272,059 + ABZR87_RS01300 0.84 +1.9
272,059 + ABZR87_RS01300 0.84 -0.1
272,059 + ABZR87_RS01300 0.84 +3.5
272,059 + ABZR87_RS01300 0.84 +1.8
272,059 + ABZR87_RS01300 0.84 +2.0
272,059 + ABZR87_RS01300 0.84 -0.2
272,059 + ABZR87_RS01300 0.84 +0.5
272,060 - ABZR87_RS01300 0.84 -0.6
272,060 - ABZR87_RS01300 0.84 -0.4
272,060 - ABZR87_RS01300 0.84 -0.4
272,060 - ABZR87_RS01300 0.84 -0.3
272,060 - ABZR87_RS01300 0.84 +3.1
272,060 - ABZR87_RS01300 0.84 +1.0
272,060 - ABZR87_RS01300 0.84 -0.3
272,060 - ABZR87_RS01300 0.84 +0.6
272,080 - ABZR87_RS01300 0.88 +0.4
272,080 - ABZR87_RS01300 0.88 +1.2
272,080 - ABZR87_RS01300 0.88 -0.2
272,083 + ABZR87_RS01300 0.88 +1.3
272,084 - ABZR87_RS01300 0.88 +0.5
272,108 - +1.6
272,141 - +1.9
272,217 + +0.0
272,275 + ABZR87_RS01305 0.10 -1.9
272,276 - ABZR87_RS01305 0.10 -0.0
272,276 - ABZR87_RS01305 0.10 +0.2
272,276 - ABZR87_RS01305 0.10 -0.8
272,276 - ABZR87_RS01305 0.10 +0.3
272,276 - ABZR87_RS01305 0.10 -0.3
272,526 + ABZR87_RS01305 0.54 +0.6
272,526 + ABZR87_RS01305 0.54 +0.7
272,526 + ABZR87_RS01305 0.54 +0.9
272,527 - ABZR87_RS01305 0.54 -0.2
272,604 + ABZR87_RS01305 0.68 +0.3
272,604 + ABZR87_RS01305 0.68 -0.1
272,605 - ABZR87_RS01305 0.68 -0.2
272,605 - ABZR87_RS01305 0.68 +0.5
272,605 - ABZR87_RS01305 0.68 -1.2
272,605 - ABZR87_RS01305 0.68 +0.7
272,721 - ABZR87_RS01305 0.88 -0.1
273,078 + ABZR87_RS01310 0.33 -0.6
273,078 + ABZR87_RS01310 0.33 -0.6
273,078 + ABZR87_RS01310 0.33 -2.4
273,078 + ABZR87_RS01310 0.33 +1.0
273,079 - ABZR87_RS01310 0.33 -0.2
273,079 - ABZR87_RS01310 0.33 -0.4
273,079 - ABZR87_RS01310 0.33 -0.0
273,079 - ABZR87_RS01310 0.33 -0.9
273,079 - ABZR87_RS01310 0.33 -1.9
273,114 + ABZR87_RS01310 0.39 -0.7
273,114 + ABZR87_RS01310 0.39 -1.6
273,147 + ABZR87_RS01310 0.45 +0.3
273,147 + ABZR87_RS01310 0.45 +0.2
273,148 - ABZR87_RS01310 0.45 -0.9
273,148 - ABZR87_RS01310 0.45 +0.8
273,148 - ABZR87_RS01310 0.45 -0.2
273,148 - ABZR87_RS01310 0.45 -0.9
273,148 - ABZR87_RS01310 0.45 -1.3
273,148 - ABZR87_RS01310 0.45 +0.1
273,288 + ABZR87_RS01310 0.69 -0.1
273,288 + ABZR87_RS01310 0.69 -1.1
273,289 - ABZR87_RS01310 0.69 -0.2
273,289 - ABZR87_RS01310 0.69 +0.2
273,316 + ABZR87_RS01310 0.74 -2.1
273,316 + ABZR87_RS01310 0.74 +0.3
273,317 - ABZR87_RS01310 0.74 -0.4
273,339 + ABZR87_RS01310 0.77 +0.7
273,339 + ABZR87_RS01310 0.77 -0.8
273,339 + ABZR87_RS01310 0.77 -0.4
273,339 + ABZR87_RS01310 0.77 -0.9
273,339 + ABZR87_RS01310 0.77 -0.0
273,339 + ABZR87_RS01310 0.77 -0.5
273,339 + ABZR87_RS01310 0.77 -0.7
273,339 + ABZR87_RS01310 0.77 -0.2
273,340 - ABZR87_RS01310 0.78 +0.0
273,340 - ABZR87_RS01310 0.78 -1.7
273,340 - ABZR87_RS01310 0.78 -0.3
273,340 - ABZR87_RS01310 0.78 -0.6
273,340 - ABZR87_RS01310 0.78 +0.0
273,340 - ABZR87_RS01310 0.78 +1.0
273,340 - ABZR87_RS01310 0.78 +0.6
273,409 + ABZR87_RS01310 0.90 -0.4
273,409 + ABZR87_RS01310 0.90 -0.1
273,410 - ABZR87_RS01310 0.90 -1.5
273,410 - ABZR87_RS01310 0.90 -0.3
273,411 + -0.7
273,482 + +0.1
273,545 + -0.5
273,545 + +1.5
273,545 + +1.2
273,546 - +0.0
273,546 - -0.4
273,546 - +0.7
273,546 - -2.4
273,655 + +0.6
273,711 + +0.4
273,742 - -0.9

Or see this region's nucleotide sequence