Experiment: rhizosphere sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01245 and ABZR87_RS01250 are separated by 173 nucleotides ABZR87_RS01250 and ABZR87_RS01255 are separated by 314 nucleotides ABZR87_RS01255 and ABZR87_RS01260 are separated by 152 nucleotides
ABZR87_RS01245: ABZR87_RS01245 - Dps family protein, at 258,783 to 259,283
_RS01245
ABZR87_RS01250: ABZR87_RS01250 - hypothetical protein, at 259,457 to 259,699
_RS01250
ABZR87_RS01255: ABZR87_RS01255 - LysR substrate-binding domain-containing protein, at 260,014 to 260,961
_RS01255
ABZR87_RS01260: ABZR87_RS01260 - metallophosphoesterase, at 261,114 to 262,280
_RS01260
Position (kb) 260
261 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 259.084 kb on + strand, within ABZR87_RS01245 at 259.084 kb on + strand, within ABZR87_RS01245 at 259.084 kb on + strand, within ABZR87_RS01245 at 259.084 kb on + strand, within ABZR87_RS01245 at 259.084 kb on + strand, within ABZR87_RS01245 at 259.085 kb on - strand, within ABZR87_RS01245 at 259.085 kb on - strand, within ABZR87_RS01245 at 259.085 kb on - strand, within ABZR87_RS01245 at 259.085 kb on - strand, within ABZR87_RS01245 at 259.085 kb on - strand, within ABZR87_RS01245 at 259.147 kb on + strand, within ABZR87_RS01245 at 259.147 kb on + strand, within ABZR87_RS01245 at 259.147 kb on + strand, within ABZR87_RS01245 at 259.147 kb on + strand, within ABZR87_RS01245 at 259.147 kb on + strand, within ABZR87_RS01245 at 259.148 kb on - strand, within ABZR87_RS01245 at 259.148 kb on - strand, within ABZR87_RS01245 at 259.148 kb on - strand, within ABZR87_RS01245 at 259.148 kb on - strand, within ABZR87_RS01245 at 259.162 kb on + strand, within ABZR87_RS01245 at 259.162 kb on + strand, within ABZR87_RS01245 at 259.162 kb on + strand, within ABZR87_RS01245 at 259.163 kb on - strand, within ABZR87_RS01245 at 259.171 kb on + strand, within ABZR87_RS01245 at 259.171 kb on + strand, within ABZR87_RS01245 at 259.172 kb on - strand, within ABZR87_RS01245 at 259.172 kb on - strand, within ABZR87_RS01245 at 259.172 kb on - strand, within ABZR87_RS01245 at 259.176 kb on - strand, within ABZR87_RS01245 at 259.176 kb on - strand, within ABZR87_RS01245 at 259.295 kb on + strand at 259.296 kb on - strand at 259.357 kb on - strand at 259.412 kb on + strand at 259.412 kb on + strand at 259.413 kb on - strand at 259.477 kb on + strand at 259.477 kb on + strand at 259.478 kb on - strand at 259.478 kb on - strand at 259.478 kb on - strand at 259.478 kb on - strand at 259.498 kb on + strand, within ABZR87_RS01250 at 259.499 kb on - strand, within ABZR87_RS01250 at 259.499 kb on - strand, within ABZR87_RS01250 at 259.499 kb on - strand, within ABZR87_RS01250 at 259.499 kb on - strand, within ABZR87_RS01250 at 259.520 kb on + strand, within ABZR87_RS01250 at 259.520 kb on + strand, within ABZR87_RS01250 at 259.520 kb on + strand, within ABZR87_RS01250 at 259.521 kb on - strand, within ABZR87_RS01250 at 259.792 kb on + strand at 259.792 kb on + strand at 259.792 kb on + strand at 259.793 kb on - strand at 259.793 kb on - strand at 259.965 kb on + strand at 260.171 kb on + strand, within ABZR87_RS01255 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.217 kb on + strand, within ABZR87_RS01255 at 260.217 kb on + strand, within ABZR87_RS01255 at 260.217 kb on + strand, within ABZR87_RS01255 at 260.217 kb on + strand, within ABZR87_RS01255 at 260.218 kb on - strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.384 kb on - strand, within ABZR87_RS01255 at 260.384 kb on - strand, within ABZR87_RS01255 at 260.480 kb on + strand, within ABZR87_RS01255 at 260.651 kb on + strand, within ABZR87_RS01255 at 260.652 kb on - strand, within ABZR87_RS01255 at 260.652 kb on - strand, within ABZR87_RS01255 at 260.652 kb on - strand, within ABZR87_RS01255 at 260.666 kb on + strand, within ABZR87_RS01255 at 260.666 kb on + strand, within ABZR87_RS01255 at 260.667 kb on - strand, within ABZR87_RS01255 at 260.667 kb on - strand, within ABZR87_RS01255 at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.989 kb on + strand at 260.990 kb on - strand at 261.131 kb on + strand at 261.131 kb on + strand at 261.132 kb on - strand at 261.210 kb on + strand at 261.210 kb on + strand at 261.210 kb on + strand at 261.210 kb on + strand at 261.210 kb on + strand at 261.210 kb on + strand at 261.210 kb on + strand at 261.211 kb on - strand at 261.211 kb on - strand at 261.211 kb on - strand at 261.211 kb on - strand at 261.211 kb on - strand at 261.211 kb on - strand at 261.213 kb on - strand at 261.213 kb on - strand at 261.286 kb on + strand, within ABZR87_RS01260 at 261.453 kb on + strand, within ABZR87_RS01260 at 261.454 kb on - strand, within ABZR87_RS01260 at 261.513 kb on + strand, within ABZR87_RS01260 at 261.514 kb on - strand, within ABZR87_RS01260 at 261.514 kb on - strand, within ABZR87_RS01260 at 261.514 kb on - strand, within ABZR87_RS01260 at 261.515 kb on + strand, within ABZR87_RS01260 at 261.515 kb on + strand, within ABZR87_RS01260 at 261.515 kb on + strand, within ABZR87_RS01260 at 261.515 kb on + strand, within ABZR87_RS01260 at 261.516 kb on - strand, within ABZR87_RS01260 at 261.516 kb on - strand, within ABZR87_RS01260 at 261.516 kb on - strand, within ABZR87_RS01260 at 261.516 kb on - strand, within ABZR87_RS01260 at 261.516 kb on - strand, within ABZR87_RS01260 at 261.518 kb on - strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.810 kb on + strand, within ABZR87_RS01260 at 261.810 kb on + strand, within ABZR87_RS01260 at 261.811 kb on - strand, within ABZR87_RS01260 at 261.811 kb on - strand, within ABZR87_RS01260 at 261.811 kb on - strand, within ABZR87_RS01260 at 261.811 kb on - strand, within ABZR87_RS01260 at 261.811 kb on - strand, within ABZR87_RS01260 at 261.813 kb on + strand, within ABZR87_RS01260 at 261.813 kb on + strand, within ABZR87_RS01260
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 4; outgrowth in LB remove 259,084 + ABZR87_RS01245 0.60 +0.8 259,084 + ABZR87_RS01245 0.60 +1.8 259,084 + ABZR87_RS01245 0.60 +2.2 259,084 + ABZR87_RS01245 0.60 +3.8 259,084 + ABZR87_RS01245 0.60 +3.8 259,085 - ABZR87_RS01245 0.60 -1.5 259,085 - ABZR87_RS01245 0.60 -0.7 259,085 - ABZR87_RS01245 0.60 +1.2 259,085 - ABZR87_RS01245 0.60 -0.7 259,085 - ABZR87_RS01245 0.60 +1.0 259,147 + ABZR87_RS01245 0.73 +2.8 259,147 + ABZR87_RS01245 0.73 +3.8 259,147 + ABZR87_RS01245 0.73 +1.5 259,147 + ABZR87_RS01245 0.73 +2.2 259,147 + ABZR87_RS01245 0.73 +0.5 259,148 - ABZR87_RS01245 0.73 -0.8 259,148 - ABZR87_RS01245 0.73 -1.6 259,148 - ABZR87_RS01245 0.73 -0.7 259,148 - ABZR87_RS01245 0.73 -1.1 259,162 + ABZR87_RS01245 0.76 +1.2 259,162 + ABZR87_RS01245 0.76 +1.5 259,162 + ABZR87_RS01245 0.76 +1.8 259,163 - ABZR87_RS01245 0.76 -1.8 259,171 + ABZR87_RS01245 0.77 +3.8 259,171 + ABZR87_RS01245 0.77 +1.5 259,172 - ABZR87_RS01245 0.78 -0.4 259,172 - ABZR87_RS01245 0.78 +0.1 259,172 - ABZR87_RS01245 0.78 -1.1 259,176 - ABZR87_RS01245 0.78 -0.6 259,176 - ABZR87_RS01245 0.78 -1.1 259,295 + +0.3 259,296 - +1.7 259,357 - -0.2 259,412 + +0.5 259,412 + +0.8 259,413 - -0.2 259,477 + -0.1 259,477 + +0.5 259,478 - +0.6 259,478 - -1.3 259,478 - -0.3 259,478 - +0.1 259,498 + ABZR87_RS01250 0.17 -0.2 259,499 - ABZR87_RS01250 0.17 -0.4 259,499 - ABZR87_RS01250 0.17 -0.2 259,499 - ABZR87_RS01250 0.17 +0.9 259,499 - ABZR87_RS01250 0.17 -0.4 259,520 + ABZR87_RS01250 0.26 +0.2 259,520 + ABZR87_RS01250 0.26 -2.2 259,520 + ABZR87_RS01250 0.26 +2.2 259,521 - ABZR87_RS01250 0.26 -0.5 259,792 + -0.2 259,792 + -2.1 259,792 + -0.2 259,793 - -0.3 259,793 - +0.2 259,965 + +0.2 260,171 + ABZR87_RS01255 0.17 -3.1 260,171 + ABZR87_RS01255 0.17 -2.4 260,171 + ABZR87_RS01255 0.17 -3.9 260,171 + ABZR87_RS01255 0.17 -3.6 260,171 + ABZR87_RS01255 0.17 -2.2 260,171 + ABZR87_RS01255 0.17 -2.6 260,172 - ABZR87_RS01255 0.17 -2.2 260,172 - ABZR87_RS01255 0.17 -0.9 260,172 - ABZR87_RS01255 0.17 -2.4 260,172 - ABZR87_RS01255 0.17 -1.7 260,172 - ABZR87_RS01255 0.17 -0.8 260,172 - ABZR87_RS01255 0.17 -1.7 260,217 + ABZR87_RS01255 0.21 -3.0 260,217 + ABZR87_RS01255 0.21 -3.6 260,217 + ABZR87_RS01255 0.21 -3.0 260,217 + ABZR87_RS01255 0.21 -3.1 260,218 - ABZR87_RS01255 0.22 -1.9 260,256 + ABZR87_RS01255 0.26 -1.9 260,256 + ABZR87_RS01255 0.26 -1.8 260,256 + ABZR87_RS01255 0.26 -4.5 260,256 + ABZR87_RS01255 0.26 -3.8 260,256 + ABZR87_RS01255 0.26 -1.9 260,256 + ABZR87_RS01255 0.26 -3.3 260,256 + ABZR87_RS01255 0.26 -2.1 260,256 + ABZR87_RS01255 0.26 -2.9 260,256 + ABZR87_RS01255 0.26 -2.9 260,256 + ABZR87_RS01255 0.26 -4.0 260,256 + ABZR87_RS01255 0.26 -3.2 260,256 + ABZR87_RS01255 0.26 -3.8 260,256 + ABZR87_RS01255 0.26 -4.4 260,256 + ABZR87_RS01255 0.26 -3.6 260,257 - ABZR87_RS01255 0.26 -1.3 260,257 - ABZR87_RS01255 0.26 -2.0 260,257 - ABZR87_RS01255 0.26 -1.1 260,257 - ABZR87_RS01255 0.26 -3.2 260,257 - ABZR87_RS01255 0.26 -2.2 260,257 - ABZR87_RS01255 0.26 -2.7 260,257 - ABZR87_RS01255 0.26 -1.0 260,257 - ABZR87_RS01255 0.26 -1.7 260,257 - ABZR87_RS01255 0.26 -1.9 260,257 - ABZR87_RS01255 0.26 -1.7 260,257 - ABZR87_RS01255 0.26 -2.8 260,257 - ABZR87_RS01255 0.26 -1.6 260,257 - ABZR87_RS01255 0.26 -1.7 260,257 - ABZR87_RS01255 0.26 -0.4 260,257 - ABZR87_RS01255 0.26 -1.1 260,384 - ABZR87_RS01255 0.39 -0.8 260,384 - ABZR87_RS01255 0.39 -0.7 260,480 + ABZR87_RS01255 0.49 +0.8 260,651 + ABZR87_RS01255 0.67 -1.9 260,652 - ABZR87_RS01255 0.67 -0.9 260,652 - ABZR87_RS01255 0.67 -2.7 260,652 - ABZR87_RS01255 0.67 -1.8 260,666 + ABZR87_RS01255 0.69 -0.9 260,666 + ABZR87_RS01255 0.69 -0.7 260,667 - ABZR87_RS01255 0.69 -1.3 260,667 - ABZR87_RS01255 0.69 +0.5 260,939 + -1.5 260,939 + -1.6 260,939 + -2.8 260,939 + -4.1 260,939 + -2.0 260,939 + -3.1 260,939 + -1.9 260,939 + -2.2 260,939 + -2.2 260,939 + -0.7 260,939 + -2.0 260,940 - -2.9 260,940 - -2.6 260,940 - -2.9 260,940 - -3.1 260,940 - -4.0 260,940 - -2.3 260,940 - -2.7 260,940 - +0.5 260,940 - -2.7 260,989 + -0.5 260,990 - -0.3 261,131 + +0.8 261,131 + -0.1 261,132 - +1.0 261,210 + -0.8 261,210 + +0.4 261,210 + -0.3 261,210 + -0.0 261,210 + -0.7 261,210 + -0.2 261,210 + +0.5 261,211 - +0.6 261,211 - -0.3 261,211 - +0.5 261,211 - -0.8 261,211 - +0.3 261,211 - +0.5 261,213 - +0.2 261,213 - +0.6 261,286 + ABZR87_RS01260 0.15 -0.4 261,453 + ABZR87_RS01260 0.29 +1.9 261,454 - ABZR87_RS01260 0.29 -0.4 261,513 + ABZR87_RS01260 0.34 -0.7 261,514 - ABZR87_RS01260 0.34 +2.2 261,514 - ABZR87_RS01260 0.34 +0.4 261,514 - ABZR87_RS01260 0.34 +1.3 261,515 + ABZR87_RS01260 0.34 +0.5 261,515 + ABZR87_RS01260 0.34 -0.2 261,515 + ABZR87_RS01260 0.34 -1.1 261,515 + ABZR87_RS01260 0.34 +1.5 261,516 - ABZR87_RS01260 0.34 +0.1 261,516 - ABZR87_RS01260 0.34 +1.2 261,516 - ABZR87_RS01260 0.34 +0.5 261,516 - ABZR87_RS01260 0.34 -0.1 261,516 - ABZR87_RS01260 0.34 -0.3 261,518 - ABZR87_RS01260 0.35 +0.0 261,645 + ABZR87_RS01260 0.46 -0.3 261,645 + ABZR87_RS01260 0.46 -0.1 261,645 + ABZR87_RS01260 0.46 -0.4 261,645 + ABZR87_RS01260 0.46 -0.2 261,645 + ABZR87_RS01260 0.46 -0.4 261,645 + ABZR87_RS01260 0.46 +1.6 261,645 + ABZR87_RS01260 0.46 -0.1 261,646 - ABZR87_RS01260 0.46 -0.6 261,646 - ABZR87_RS01260 0.46 +0.8 261,646 - ABZR87_RS01260 0.46 +0.5 261,646 - ABZR87_RS01260 0.46 -0.2 261,646 - ABZR87_RS01260 0.46 +0.7 261,646 - ABZR87_RS01260 0.46 -0.8 261,646 - ABZR87_RS01260 0.46 -1.5 261,810 + ABZR87_RS01260 0.60 -0.8 261,810 + ABZR87_RS01260 0.60 +0.0 261,811 - ABZR87_RS01260 0.60 -0.8 261,811 - ABZR87_RS01260 0.60 -0.9 261,811 - ABZR87_RS01260 0.60 -0.2 261,811 - ABZR87_RS01260 0.60 -0.0 261,811 - ABZR87_RS01260 0.60 +0.6 261,813 + ABZR87_RS01260 0.60 -0.3 261,813 + ABZR87_RS01260 0.60 -0.2
Or see this region's nucleotide sequence