Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00510

Experiment: rhizosphere sample 4; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00505 and ABZR87_RS00510 are separated by 73 nucleotidesABZR87_RS00510 and ABZR87_RS00515 are separated by 9 nucleotidesABZR87_RS00515 and ABZR87_RS00520 are separated by 34 nucleotides ABZR87_RS00505: ABZR87_RS00505 - LysR family transcriptional regulator, at 103,801 to 104,709 _RS00505 ABZR87_RS00510: ABZR87_RS00510 - MFS transporter, at 104,783 to 106,339 _RS00510 ABZR87_RS00515: ABZR87_RS00515 - DoxX family protein, at 106,349 to 106,759 _RS00515 ABZR87_RS00520: ABZR87_RS00520 - LysR family transcriptional regulator, at 106,794 to 107,678 _RS00520 Position (kb) 104 105 106 107Strain fitness (log2 ratio) -2 -1 0 1 2 3at 103.936 kb on + strand, within ABZR87_RS00505at 103.936 kb on + strand, within ABZR87_RS00505at 103.937 kb on - strand, within ABZR87_RS00505at 103.976 kb on - strand, within ABZR87_RS00505at 104.210 kb on + strand, within ABZR87_RS00505at 104.210 kb on + strand, within ABZR87_RS00505at 104.210 kb on + strand, within ABZR87_RS00505at 104.210 kb on + strand, within ABZR87_RS00505at 104.210 kb on + strand, within ABZR87_RS00505at 104.211 kb on - strand, within ABZR87_RS00505at 104.211 kb on - strand, within ABZR87_RS00505at 104.211 kb on - strand, within ABZR87_RS00505at 104.211 kb on - strand, within ABZR87_RS00505at 104.211 kb on - strand, within ABZR87_RS00505at 104.298 kb on - strand, within ABZR87_RS00505at 104.360 kb on + strand, within ABZR87_RS00505at 104.516 kb on + strand, within ABZR87_RS00505at 104.516 kb on + strand, within ABZR87_RS00505at 104.517 kb on - strand, within ABZR87_RS00505at 104.517 kb on - strand, within ABZR87_RS00505at 104.602 kb on + strand, within ABZR87_RS00505at 104.603 kb on - strand, within ABZR87_RS00505at 104.735 kb on + strandat 104.735 kb on + strandat 104.735 kb on + strandat 104.736 kb on - strandat 104.736 kb on - strandat 104.749 kb on + strandat 104.771 kb on - strandat 104.771 kb on - strandat 104.771 kb on - strandat 104.771 kb on - strandat 104.963 kb on + strand, within ABZR87_RS00510at 104.964 kb on - strand, within ABZR87_RS00510at 104.969 kb on + strand, within ABZR87_RS00510at 104.969 kb on + strand, within ABZR87_RS00510at 104.969 kb on + strand, within ABZR87_RS00510at 104.969 kb on + strand, within ABZR87_RS00510at 104.969 kb on + strand, within ABZR87_RS00510at 104.969 kb on + strand, within ABZR87_RS00510at 104.969 kb on + strand, within ABZR87_RS00510at 104.969 kb on + strand, within ABZR87_RS00510at 104.969 kb on + strand, within ABZR87_RS00510at 104.969 kb on + strand, within ABZR87_RS00510at 104.969 kb on + strand, within ABZR87_RS00510at 104.970 kb on - strand, within ABZR87_RS00510at 104.970 kb on - strand, within ABZR87_RS00510at 104.970 kb on - strand, within ABZR87_RS00510at 104.970 kb on - strand, within ABZR87_RS00510at 104.970 kb on - strand, within ABZR87_RS00510at 104.970 kb on - strand, within ABZR87_RS00510at 104.984 kb on + strand, within ABZR87_RS00510at 104.985 kb on - strand, within ABZR87_RS00510at 104.985 kb on - strand, within ABZR87_RS00510at 104.985 kb on - strand, within ABZR87_RS00510at 104.985 kb on - strand, within ABZR87_RS00510at 105.053 kb on + strand, within ABZR87_RS00510at 105.053 kb on + strand, within ABZR87_RS00510at 105.053 kb on + strand, within ABZR87_RS00510at 105.053 kb on + strand, within ABZR87_RS00510at 105.053 kb on + strand, within ABZR87_RS00510at 105.053 kb on + strand, within ABZR87_RS00510at 105.054 kb on - strand, within ABZR87_RS00510at 105.054 kb on - strand, within ABZR87_RS00510at 105.054 kb on - strand, within ABZR87_RS00510at 105.054 kb on - strand, within ABZR87_RS00510at 105.082 kb on + strand, within ABZR87_RS00510at 105.270 kb on + strand, within ABZR87_RS00510at 105.271 kb on - strand, within ABZR87_RS00510at 105.271 kb on - strand, within ABZR87_RS00510at 105.302 kb on + strand, within ABZR87_RS00510at 105.302 kb on + strand, within ABZR87_RS00510at 105.302 kb on + strand, within ABZR87_RS00510at 105.303 kb on - strand, within ABZR87_RS00510at 105.303 kb on - strand, within ABZR87_RS00510at 105.303 kb on - strand, within ABZR87_RS00510at 105.303 kb on - strand, within ABZR87_RS00510at 105.521 kb on + strand, within ABZR87_RS00510at 105.571 kb on + strand, within ABZR87_RS00510at 105.686 kb on + strand, within ABZR87_RS00510at 105.686 kb on + strand, within ABZR87_RS00510at 105.686 kb on + strand, within ABZR87_RS00510at 105.687 kb on - strand, within ABZR87_RS00510at 105.687 kb on - strand, within ABZR87_RS00510at 105.689 kb on + strand, within ABZR87_RS00510at 105.689 kb on + strand, within ABZR87_RS00510at 105.689 kb on + strand, within ABZR87_RS00510at 105.689 kb on + strand, within ABZR87_RS00510at 105.690 kb on - strand, within ABZR87_RS00510at 105.690 kb on - strand, within ABZR87_RS00510at 105.690 kb on - strand, within ABZR87_RS00510at 105.704 kb on + strand, within ABZR87_RS00510at 105.713 kb on + strand, within ABZR87_RS00510at 105.714 kb on - strand, within ABZR87_RS00510at 105.714 kb on - strand, within ABZR87_RS00510at 105.714 kb on - strand, within ABZR87_RS00510at 105.714 kb on - strand, within ABZR87_RS00510at 105.751 kb on + strand, within ABZR87_RS00510at 105.881 kb on + strand, within ABZR87_RS00510at 105.882 kb on - strand, within ABZR87_RS00510at 105.882 kb on - strand, within ABZR87_RS00510at 105.882 kb on - strand, within ABZR87_RS00510at 105.882 kb on - strand, within ABZR87_RS00510at 105.882 kb on - strand, within ABZR87_RS00510at 105.935 kb on + strand, within ABZR87_RS00510at 105.935 kb on + strand, within ABZR87_RS00510at 106.010 kb on + strand, within ABZR87_RS00510at 106.010 kb on + strand, within ABZR87_RS00510at 106.010 kb on + strand, within ABZR87_RS00510at 106.010 kb on + strand, within ABZR87_RS00510at 106.011 kb on - strand, within ABZR87_RS00510at 106.011 kb on - strand, within ABZR87_RS00510at 106.011 kb on - strand, within ABZR87_RS00510at 106.011 kb on - strand, within ABZR87_RS00510at 106.011 kb on - strand, within ABZR87_RS00510at 106.314 kb on + strandat 106.315 kb on - strandat 106.351 kb on - strandat 106.361 kb on + strandat 106.362 kb on - strandat 106.368 kb on + strandat 106.368 kb on + strandat 106.368 kb on + strandat 106.368 kb on + strandat 106.428 kb on + strand, within ABZR87_RS00515at 106.428 kb on + strand, within ABZR87_RS00515at 106.428 kb on + strand, within ABZR87_RS00515at 106.429 kb on - strand, within ABZR87_RS00515at 106.429 kb on - strand, within ABZR87_RS00515at 106.429 kb on - strand, within ABZR87_RS00515at 106.429 kb on - strand, within ABZR87_RS00515at 106.468 kb on + strand, within ABZR87_RS00515at 106.469 kb on - strand, within ABZR87_RS00515at 106.476 kb on + strand, within ABZR87_RS00515at 106.477 kb on - strand, within ABZR87_RS00515at 106.477 kb on - strand, within ABZR87_RS00515at 106.627 kb on + strand, within ABZR87_RS00515at 106.627 kb on + strand, within ABZR87_RS00515at 106.627 kb on + strand, within ABZR87_RS00515at 106.627 kb on + strand, within ABZR87_RS00515at 106.628 kb on - strand, within ABZR87_RS00515at 106.628 kb on - strand, within ABZR87_RS00515at 106.628 kb on - strand, within ABZR87_RS00515at 106.628 kb on - strand, within ABZR87_RS00515at 106.638 kb on + strand, within ABZR87_RS00515at 106.639 kb on - strand, within ABZR87_RS00515at 106.796 kb on - strandat 107.159 kb on + strand, within ABZR87_RS00520at 107.194 kb on + strand, within ABZR87_RS00520at 107.194 kb on + strand, within ABZR87_RS00520at 107.194 kb on + strand, within ABZR87_RS00520at 107.194 kb on + strand, within ABZR87_RS00520at 107.194 kb on + strand, within ABZR87_RS00520at 107.195 kb on - strand, within ABZR87_RS00520

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 4; outgrowth in LB
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103,936 + ABZR87_RS00505 0.15 +0.5
103,936 + ABZR87_RS00505 0.15 -0.8
103,937 - ABZR87_RS00505 0.15 -0.2
103,976 - ABZR87_RS00505 0.19 -2.3
104,210 + ABZR87_RS00505 0.45 -0.4
104,210 + ABZR87_RS00505 0.45 +0.8
104,210 + ABZR87_RS00505 0.45 -0.9
104,210 + ABZR87_RS00505 0.45 +0.3
104,210 + ABZR87_RS00505 0.45 +0.6
104,211 - ABZR87_RS00505 0.45 +0.6
104,211 - ABZR87_RS00505 0.45 +0.7
104,211 - ABZR87_RS00505 0.45 +0.7
104,211 - ABZR87_RS00505 0.45 -0.5
104,211 - ABZR87_RS00505 0.45 +0.1
104,298 - ABZR87_RS00505 0.55 -0.5
104,360 + ABZR87_RS00505 0.61 -0.6
104,516 + ABZR87_RS00505 0.79 +0.9
104,516 + ABZR87_RS00505 0.79 -0.4
104,517 - ABZR87_RS00505 0.79 +1.0
104,517 - ABZR87_RS00505 0.79 +0.0
104,602 + ABZR87_RS00505 0.88 +0.9
104,603 - ABZR87_RS00505 0.88 +1.2
104,735 + -0.1
104,735 + +1.0
104,735 + +1.3
104,736 - -0.2
104,736 - -0.2
104,749 + -1.4
104,771 - -0.6
104,771 - +0.3
104,771 - +0.4
104,771 - +0.1
104,963 + ABZR87_RS00510 0.12 -0.2
104,964 - ABZR87_RS00510 0.12 +0.3
104,969 + ABZR87_RS00510 0.12 +0.8
104,969 + ABZR87_RS00510 0.12 +0.2
104,969 + ABZR87_RS00510 0.12 -1.9
104,969 + ABZR87_RS00510 0.12 -0.4
104,969 + ABZR87_RS00510 0.12 +0.1
104,969 + ABZR87_RS00510 0.12 +0.1
104,969 + ABZR87_RS00510 0.12 +0.1
104,969 + ABZR87_RS00510 0.12 +2.7
104,969 + ABZR87_RS00510 0.12 -0.8
104,969 + ABZR87_RS00510 0.12 +0.2
104,969 + ABZR87_RS00510 0.12 +1.8
104,970 - ABZR87_RS00510 0.12 -0.2
104,970 - ABZR87_RS00510 0.12 -0.1
104,970 - ABZR87_RS00510 0.12 -0.3
104,970 - ABZR87_RS00510 0.12 -0.2
104,970 - ABZR87_RS00510 0.12 -0.7
104,970 - ABZR87_RS00510 0.12 -1.5
104,984 + ABZR87_RS00510 0.13 -0.5
104,985 - ABZR87_RS00510 0.13 -0.2
104,985 - ABZR87_RS00510 0.13 -0.6
104,985 - ABZR87_RS00510 0.13 +0.9
104,985 - ABZR87_RS00510 0.13 +0.4
105,053 + ABZR87_RS00510 0.17 +1.0
105,053 + ABZR87_RS00510 0.17 +0.3
105,053 + ABZR87_RS00510 0.17 +0.6
105,053 + ABZR87_RS00510 0.17 -0.3
105,053 + ABZR87_RS00510 0.17 -1.3
105,053 + ABZR87_RS00510 0.17 -0.1
105,054 - ABZR87_RS00510 0.17 -0.6
105,054 - ABZR87_RS00510 0.17 -2.1
105,054 - ABZR87_RS00510 0.17 +0.4
105,054 - ABZR87_RS00510 0.17 +0.7
105,082 + ABZR87_RS00510 0.19 +0.1
105,270 + ABZR87_RS00510 0.31 -0.5
105,271 - ABZR87_RS00510 0.31 +0.0
105,271 - ABZR87_RS00510 0.31 -0.5
105,302 + ABZR87_RS00510 0.33 -2.3
105,302 + ABZR87_RS00510 0.33 -2.2
105,302 + ABZR87_RS00510 0.33 +1.7
105,303 - ABZR87_RS00510 0.33 +1.0
105,303 - ABZR87_RS00510 0.33 -0.3
105,303 - ABZR87_RS00510 0.33 -1.0
105,303 - ABZR87_RS00510 0.33 -1.3
105,521 + ABZR87_RS00510 0.47 +1.0
105,571 + ABZR87_RS00510 0.51 -0.9
105,686 + ABZR87_RS00510 0.58 +0.7
105,686 + ABZR87_RS00510 0.58 -0.5
105,686 + ABZR87_RS00510 0.58 -0.2
105,687 - ABZR87_RS00510 0.58 -0.2
105,687 - ABZR87_RS00510 0.58 -0.7
105,689 + ABZR87_RS00510 0.58 +0.2
105,689 + ABZR87_RS00510 0.58 -0.3
105,689 + ABZR87_RS00510 0.58 -0.8
105,689 + ABZR87_RS00510 0.58 -0.8
105,690 - ABZR87_RS00510 0.58 -0.3
105,690 - ABZR87_RS00510 0.58 -0.3
105,690 - ABZR87_RS00510 0.58 +0.8
105,704 + ABZR87_RS00510 0.59 -0.9
105,713 + ABZR87_RS00510 0.60 -0.0
105,714 - ABZR87_RS00510 0.60 +0.3
105,714 - ABZR87_RS00510 0.60 -0.5
105,714 - ABZR87_RS00510 0.60 -0.0
105,714 - ABZR87_RS00510 0.60 +3.0
105,751 + ABZR87_RS00510 0.62 -1.0
105,881 + ABZR87_RS00510 0.71 -0.3
105,882 - ABZR87_RS00510 0.71 +0.8
105,882 - ABZR87_RS00510 0.71 +1.3
105,882 - ABZR87_RS00510 0.71 +0.1
105,882 - ABZR87_RS00510 0.71 -0.4
105,882 - ABZR87_RS00510 0.71 -1.3
105,935 + ABZR87_RS00510 0.74 +1.4
105,935 + ABZR87_RS00510 0.74 +0.6
106,010 + ABZR87_RS00510 0.79 -1.1
106,010 + ABZR87_RS00510 0.79 -0.3
106,010 + ABZR87_RS00510 0.79 +0.2
106,010 + ABZR87_RS00510 0.79 -0.4
106,011 - ABZR87_RS00510 0.79 -0.7
106,011 - ABZR87_RS00510 0.79 -0.7
106,011 - ABZR87_RS00510 0.79 -0.6
106,011 - ABZR87_RS00510 0.79 -0.8
106,011 - ABZR87_RS00510 0.79 +1.0
106,314 + -0.2
106,315 - -0.7
106,351 - +0.5
106,361 + +0.2
106,362 - -1.6
106,368 + -0.8
106,368 + -0.0
106,368 + -0.7
106,368 + -0.4
106,428 + ABZR87_RS00515 0.19 +0.4
106,428 + ABZR87_RS00515 0.19 +0.9
106,428 + ABZR87_RS00515 0.19 +0.9
106,429 - ABZR87_RS00515 0.19 +1.0
106,429 - ABZR87_RS00515 0.19 -0.5
106,429 - ABZR87_RS00515 0.19 -1.0
106,429 - ABZR87_RS00515 0.19 -0.3
106,468 + ABZR87_RS00515 0.29 -0.8
106,469 - ABZR87_RS00515 0.29 -0.0
106,476 + ABZR87_RS00515 0.31 -0.3
106,477 - ABZR87_RS00515 0.31 -1.6
106,477 - ABZR87_RS00515 0.31 +0.2
106,627 + ABZR87_RS00515 0.68 -0.7
106,627 + ABZR87_RS00515 0.68 -1.0
106,627 + ABZR87_RS00515 0.68 -2.0
106,627 + ABZR87_RS00515 0.68 +0.6
106,628 - ABZR87_RS00515 0.68 -0.9
106,628 - ABZR87_RS00515 0.68 -0.2
106,628 - ABZR87_RS00515 0.68 -0.0
106,628 - ABZR87_RS00515 0.68 -0.1
106,638 + ABZR87_RS00515 0.70 +0.4
106,639 - ABZR87_RS00515 0.71 -0.4
106,796 - +1.5
107,159 + ABZR87_RS00520 0.41 +1.6
107,194 + ABZR87_RS00520 0.45 +0.7
107,194 + ABZR87_RS00520 0.45 -0.4
107,194 + ABZR87_RS00520 0.45 +0.6
107,194 + ABZR87_RS00520 0.45 -0.7
107,194 + ABZR87_RS00520 0.45 +0.7
107,195 - ABZR87_RS00520 0.45 +0.0

Or see this region's nucleotide sequence