Experiment: rhizosphere sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00500 and ABZR87_RS00505 are separated by 64 nucleotides ABZR87_RS00505 and ABZR87_RS00510 are separated by 73 nucleotides
ABZR87_RS00500: ABZR87_RS00500 - LysR substrate-binding domain-containing protein, at 102,771 to 103,736
_RS00500
ABZR87_RS00505: ABZR87_RS00505 - LysR family transcriptional regulator, at 103,801 to 104,709
_RS00505
ABZR87_RS00510: ABZR87_RS00510 - MFS transporter, at 104,783 to 106,339
_RS00510
Position (kb) 103
104
105 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 103.063 kb on + strand, within ABZR87_RS00500 at 103.063 kb on + strand, within ABZR87_RS00500 at 103.063 kb on + strand, within ABZR87_RS00500 at 103.063 kb on + strand, within ABZR87_RS00500 at 103.063 kb on + strand, within ABZR87_RS00500 at 103.064 kb on - strand, within ABZR87_RS00500 at 103.064 kb on - strand, within ABZR87_RS00500 at 103.064 kb on - strand, within ABZR87_RS00500 at 103.064 kb on - strand, within ABZR87_RS00500 at 103.379 kb on + strand, within ABZR87_RS00500 at 103.522 kb on + strand, within ABZR87_RS00500 at 103.523 kb on - strand, within ABZR87_RS00500 at 103.523 kb on - strand, within ABZR87_RS00500 at 103.936 kb on + strand, within ABZR87_RS00505 at 103.936 kb on + strand, within ABZR87_RS00505 at 103.937 kb on - strand, within ABZR87_RS00505 at 103.976 kb on - strand, within ABZR87_RS00505 at 104.210 kb on + strand, within ABZR87_RS00505 at 104.210 kb on + strand, within ABZR87_RS00505 at 104.210 kb on + strand, within ABZR87_RS00505 at 104.210 kb on + strand, within ABZR87_RS00505 at 104.210 kb on + strand, within ABZR87_RS00505 at 104.211 kb on - strand, within ABZR87_RS00505 at 104.211 kb on - strand, within ABZR87_RS00505 at 104.211 kb on - strand, within ABZR87_RS00505 at 104.211 kb on - strand, within ABZR87_RS00505 at 104.211 kb on - strand, within ABZR87_RS00505 at 104.298 kb on - strand, within ABZR87_RS00505 at 104.360 kb on + strand, within ABZR87_RS00505 at 104.516 kb on + strand, within ABZR87_RS00505 at 104.516 kb on + strand, within ABZR87_RS00505 at 104.517 kb on - strand, within ABZR87_RS00505 at 104.517 kb on - strand, within ABZR87_RS00505 at 104.602 kb on + strand, within ABZR87_RS00505 at 104.603 kb on - strand, within ABZR87_RS00505 at 104.735 kb on + strand at 104.735 kb on + strand at 104.735 kb on + strand at 104.736 kb on - strand at 104.736 kb on - strand at 104.749 kb on + strand at 104.771 kb on - strand at 104.771 kb on - strand at 104.771 kb on - strand at 104.771 kb on - strand at 104.963 kb on + strand, within ABZR87_RS00510 at 104.964 kb on - strand, within ABZR87_RS00510 at 104.969 kb on + strand, within ABZR87_RS00510 at 104.969 kb on + strand, within ABZR87_RS00510 at 104.969 kb on + strand, within ABZR87_RS00510 at 104.969 kb on + strand, within ABZR87_RS00510 at 104.969 kb on + strand, within ABZR87_RS00510 at 104.969 kb on + strand, within ABZR87_RS00510 at 104.969 kb on + strand, within ABZR87_RS00510 at 104.969 kb on + strand, within ABZR87_RS00510 at 104.969 kb on + strand, within ABZR87_RS00510 at 104.969 kb on + strand, within ABZR87_RS00510 at 104.969 kb on + strand, within ABZR87_RS00510 at 104.970 kb on - strand, within ABZR87_RS00510 at 104.970 kb on - strand, within ABZR87_RS00510 at 104.970 kb on - strand, within ABZR87_RS00510 at 104.970 kb on - strand, within ABZR87_RS00510 at 104.970 kb on - strand, within ABZR87_RS00510 at 104.970 kb on - strand, within ABZR87_RS00510 at 104.984 kb on + strand, within ABZR87_RS00510 at 104.985 kb on - strand, within ABZR87_RS00510 at 104.985 kb on - strand, within ABZR87_RS00510 at 104.985 kb on - strand, within ABZR87_RS00510 at 104.985 kb on - strand, within ABZR87_RS00510 at 105.053 kb on + strand, within ABZR87_RS00510 at 105.053 kb on + strand, within ABZR87_RS00510 at 105.053 kb on + strand, within ABZR87_RS00510 at 105.053 kb on + strand, within ABZR87_RS00510 at 105.053 kb on + strand, within ABZR87_RS00510 at 105.053 kb on + strand, within ABZR87_RS00510 at 105.054 kb on - strand, within ABZR87_RS00510 at 105.054 kb on - strand, within ABZR87_RS00510 at 105.054 kb on - strand, within ABZR87_RS00510 at 105.054 kb on - strand, within ABZR87_RS00510 at 105.082 kb on + strand, within ABZR87_RS00510 at 105.270 kb on + strand, within ABZR87_RS00510 at 105.271 kb on - strand, within ABZR87_RS00510 at 105.271 kb on - strand, within ABZR87_RS00510 at 105.302 kb on + strand, within ABZR87_RS00510 at 105.302 kb on + strand, within ABZR87_RS00510 at 105.302 kb on + strand, within ABZR87_RS00510 at 105.303 kb on - strand, within ABZR87_RS00510 at 105.303 kb on - strand, within ABZR87_RS00510 at 105.303 kb on - strand, within ABZR87_RS00510 at 105.303 kb on - strand, within ABZR87_RS00510 at 105.521 kb on + strand, within ABZR87_RS00510 at 105.571 kb on + strand, within ABZR87_RS00510 at 105.686 kb on + strand, within ABZR87_RS00510 at 105.686 kb on + strand, within ABZR87_RS00510 at 105.686 kb on + strand, within ABZR87_RS00510 at 105.687 kb on - strand, within ABZR87_RS00510 at 105.687 kb on - strand, within ABZR87_RS00510 at 105.689 kb on + strand, within ABZR87_RS00510 at 105.689 kb on + strand, within ABZR87_RS00510 at 105.689 kb on + strand, within ABZR87_RS00510 at 105.689 kb on + strand, within ABZR87_RS00510 at 105.690 kb on - strand, within ABZR87_RS00510 at 105.690 kb on - strand, within ABZR87_RS00510 at 105.690 kb on - strand, within ABZR87_RS00510 at 105.704 kb on + strand, within ABZR87_RS00510
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 4; outgrowth in LB remove 103,063 + ABZR87_RS00500 0.30 +0.3 103,063 + ABZR87_RS00500 0.30 +0.8 103,063 + ABZR87_RS00500 0.30 +1.0 103,063 + ABZR87_RS00500 0.30 -0.1 103,063 + ABZR87_RS00500 0.30 -3.1 103,064 - ABZR87_RS00500 0.30 -0.7 103,064 - ABZR87_RS00500 0.30 +0.6 103,064 - ABZR87_RS00500 0.30 -0.6 103,064 - ABZR87_RS00500 0.30 -1.0 103,379 + ABZR87_RS00500 0.63 -1.1 103,522 + ABZR87_RS00500 0.78 -0.7 103,523 - ABZR87_RS00500 0.78 -1.0 103,523 - ABZR87_RS00500 0.78 -1.8 103,936 + ABZR87_RS00505 0.15 +0.5 103,936 + ABZR87_RS00505 0.15 -0.8 103,937 - ABZR87_RS00505 0.15 -0.2 103,976 - ABZR87_RS00505 0.19 -2.3 104,210 + ABZR87_RS00505 0.45 -0.4 104,210 + ABZR87_RS00505 0.45 +0.8 104,210 + ABZR87_RS00505 0.45 -0.9 104,210 + ABZR87_RS00505 0.45 +0.3 104,210 + ABZR87_RS00505 0.45 +0.6 104,211 - ABZR87_RS00505 0.45 +0.6 104,211 - ABZR87_RS00505 0.45 +0.7 104,211 - ABZR87_RS00505 0.45 +0.7 104,211 - ABZR87_RS00505 0.45 -0.5 104,211 - ABZR87_RS00505 0.45 +0.1 104,298 - ABZR87_RS00505 0.55 -0.5 104,360 + ABZR87_RS00505 0.61 -0.6 104,516 + ABZR87_RS00505 0.79 +0.9 104,516 + ABZR87_RS00505 0.79 -0.4 104,517 - ABZR87_RS00505 0.79 +1.0 104,517 - ABZR87_RS00505 0.79 +0.0 104,602 + ABZR87_RS00505 0.88 +0.9 104,603 - ABZR87_RS00505 0.88 +1.2 104,735 + -0.1 104,735 + +1.0 104,735 + +1.3 104,736 - -0.2 104,736 - -0.2 104,749 + -1.4 104,771 - -0.6 104,771 - +0.3 104,771 - +0.4 104,771 - +0.1 104,963 + ABZR87_RS00510 0.12 -0.2 104,964 - ABZR87_RS00510 0.12 +0.3 104,969 + ABZR87_RS00510 0.12 +0.8 104,969 + ABZR87_RS00510 0.12 +0.2 104,969 + ABZR87_RS00510 0.12 -1.9 104,969 + ABZR87_RS00510 0.12 -0.4 104,969 + ABZR87_RS00510 0.12 +0.1 104,969 + ABZR87_RS00510 0.12 +0.1 104,969 + ABZR87_RS00510 0.12 +0.1 104,969 + ABZR87_RS00510 0.12 +2.7 104,969 + ABZR87_RS00510 0.12 -0.8 104,969 + ABZR87_RS00510 0.12 +0.2 104,969 + ABZR87_RS00510 0.12 +1.8 104,970 - ABZR87_RS00510 0.12 -0.2 104,970 - ABZR87_RS00510 0.12 -0.1 104,970 - ABZR87_RS00510 0.12 -0.3 104,970 - ABZR87_RS00510 0.12 -0.2 104,970 - ABZR87_RS00510 0.12 -0.7 104,970 - ABZR87_RS00510 0.12 -1.5 104,984 + ABZR87_RS00510 0.13 -0.5 104,985 - ABZR87_RS00510 0.13 -0.2 104,985 - ABZR87_RS00510 0.13 -0.6 104,985 - ABZR87_RS00510 0.13 +0.9 104,985 - ABZR87_RS00510 0.13 +0.4 105,053 + ABZR87_RS00510 0.17 +1.0 105,053 + ABZR87_RS00510 0.17 +0.3 105,053 + ABZR87_RS00510 0.17 +0.6 105,053 + ABZR87_RS00510 0.17 -0.3 105,053 + ABZR87_RS00510 0.17 -1.3 105,053 + ABZR87_RS00510 0.17 -0.1 105,054 - ABZR87_RS00510 0.17 -0.6 105,054 - ABZR87_RS00510 0.17 -2.1 105,054 - ABZR87_RS00510 0.17 +0.4 105,054 - ABZR87_RS00510 0.17 +0.7 105,082 + ABZR87_RS00510 0.19 +0.1 105,270 + ABZR87_RS00510 0.31 -0.5 105,271 - ABZR87_RS00510 0.31 +0.0 105,271 - ABZR87_RS00510 0.31 -0.5 105,302 + ABZR87_RS00510 0.33 -2.3 105,302 + ABZR87_RS00510 0.33 -2.2 105,302 + ABZR87_RS00510 0.33 +1.7 105,303 - ABZR87_RS00510 0.33 +1.0 105,303 - ABZR87_RS00510 0.33 -0.3 105,303 - ABZR87_RS00510 0.33 -1.0 105,303 - ABZR87_RS00510 0.33 -1.3 105,521 + ABZR87_RS00510 0.47 +1.0 105,571 + ABZR87_RS00510 0.51 -0.9 105,686 + ABZR87_RS00510 0.58 +0.7 105,686 + ABZR87_RS00510 0.58 -0.5 105,686 + ABZR87_RS00510 0.58 -0.2 105,687 - ABZR87_RS00510 0.58 -0.2 105,687 - ABZR87_RS00510 0.58 -0.7 105,689 + ABZR87_RS00510 0.58 +0.2 105,689 + ABZR87_RS00510 0.58 -0.3 105,689 + ABZR87_RS00510 0.58 -0.8 105,689 + ABZR87_RS00510 0.58 -0.8 105,690 - ABZR87_RS00510 0.58 -0.3 105,690 - ABZR87_RS00510 0.58 -0.3 105,690 - ABZR87_RS00510 0.58 +0.8 105,704 + ABZR87_RS00510 0.59 -0.9
Or see this region's nucleotide sequence