Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3769

Experiment: Succinic Acid 31.25 mM; anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A3767 and Rru_A3768 are separated by 61 nucleotidesRru_A3768 and Rru_A3769 overlap by 4 nucleotidesRru_A3769 and Rru_A3770 are separated by 66 nucleotides Rru_A3767: Rru_A3767 - Ferric uptake regulator (FUR) family (NCBI), at 4,315,983 to 4,316,405 _A3767 Rru_A3768: Rru_A3768 - hypothetical protein (NCBI), at 4,316,467 to 4,317,267 _A3768 Rru_A3769: Rru_A3769 - Phospholipid/glycerol acyltransferase (NCBI), at 4,317,264 to 4,318,223 _A3769 Rru_A3770: Rru_A3770 - tRNA-i(6)A37 modification enzyme MiaB (NCBI), at 4,318,290 to 4,319,693 _A3770 Position (kb) 4317 4318 4319Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4318.242 kb on + strandat 4318.243 kb on - strandat 4318.312 kb on + strandat 4318.341 kb on + strandat 4318.384 kb on - strandat 4318.430 kb on + strandat 4318.430 kb on + strandat 4318.430 kb on + strandat 4318.431 kb on - strand, within Rru_A3770at 4318.623 kb on + strand, within Rru_A3770at 4318.803 kb on + strand, within Rru_A3770at 4318.803 kb on + strand, within Rru_A3770at 4318.805 kb on + strand, within Rru_A3770at 4318.805 kb on + strand, within Rru_A3770at 4318.806 kb on - strand, within Rru_A3770at 4318.917 kb on + strand, within Rru_A3770at 4318.917 kb on + strand, within Rru_A3770at 4318.917 kb on + strand, within Rru_A3770at 4319.007 kb on + strand, within Rru_A3770at 4319.007 kb on + strand, within Rru_A3770at 4319.007 kb on + strand, within Rru_A3770at 4319.117 kb on + strand, within Rru_A3770at 4319.117 kb on + strand, within Rru_A3770at 4319.117 kb on + strand, within Rru_A3770

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
remove
4,318,242 + +0.1
4,318,243 - -2.6
4,318,312 + +0.3
4,318,341 + -3.2
4,318,384 - -1.7
4,318,430 + -0.7
4,318,430 + -2.3
4,318,430 + +1.3
4,318,431 - Rru_A3770 0.10 -2.1
4,318,623 + Rru_A3770 0.24 -0.9
4,318,803 + Rru_A3770 0.37 -1.2
4,318,803 + Rru_A3770 0.37 -3.9
4,318,805 + Rru_A3770 0.37 -2.2
4,318,805 + Rru_A3770 0.37 -2.7
4,318,806 - Rru_A3770 0.37 -2.5
4,318,917 + Rru_A3770 0.45 -0.7
4,318,917 + Rru_A3770 0.45 -2.3
4,318,917 + Rru_A3770 0.45 -2.3
4,319,007 + Rru_A3770 0.51 -2.0
4,319,007 + Rru_A3770 0.51 +0.7
4,319,007 + Rru_A3770 0.51 +1.4
4,319,117 + Rru_A3770 0.59 -2.9
4,319,117 + Rru_A3770 0.59 -1.5
4,319,117 + Rru_A3770 0.59 -2.0

Or see this region's nucleotide sequence