Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3686

Experiment: Succinic Acid 31.25 mM; anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A3684 and Rru_A3685 are separated by 46 nucleotidesRru_A3685 and Rru_A3686 are separated by 99 nucleotidesRru_A3686 and Rru_A3687 are separated by 49 nucleotidesRru_A3687 and Rru_A3688 overlap by 4 nucleotides Rru_A3684: Rru_A3684 - Sulfotransferase (NCBI), at 4,231,018 to 4,232,646 _A3684 Rru_A3685: Rru_A3685 - Transcriptional Regulator, AsnC family (NCBI), at 4,232,693 to 4,233,217 _A3685 Rru_A3686: Rru_A3686 - Alanine dehydrogenase and pyridine nucleotide transhydrogenase (NCBI), at 4,233,317 to 4,234,435 _A3686 Rru_A3687: Rru_A3687 - Cobalt transport protein (NCBI), at 4,234,485 to 4,235,117 _A3687 Rru_A3688: Rru_A3688 - ABC transporter component (NCBI), at 4,235,114 to 4,235,815 _A3688 Position (kb) 4233 4234 4235Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4232.682 kb on + strandat 4232.684 kb on + strandat 4232.684 kb on + strandat 4232.685 kb on - strandat 4232.685 kb on - strandat 4232.685 kb on - strandat 4232.785 kb on - strand, within Rru_A3685at 4232.785 kb on - strand, within Rru_A3685at 4232.785 kb on - strand, within Rru_A3685at 4232.785 kb on - strand, within Rru_A3685at 4232.785 kb on - strand, within Rru_A3685at 4232.785 kb on - strand, within Rru_A3685at 4232.915 kb on + strand, within Rru_A3685at 4233.001 kb on + strand, within Rru_A3685at 4233.001 kb on + strand, within Rru_A3685at 4233.001 kb on + strand, within Rru_A3685at 4233.002 kb on - strand, within Rru_A3685at 4233.002 kb on - strand, within Rru_A3685at 4233.004 kb on - strand, within Rru_A3685at 4233.117 kb on - strand, within Rru_A3685at 4233.133 kb on + strand, within Rru_A3685at 4233.133 kb on + strand, within Rru_A3685at 4233.140 kb on + strand, within Rru_A3685at 4233.140 kb on + strand, within Rru_A3685at 4233.141 kb on - strand, within Rru_A3685at 4233.145 kb on + strand, within Rru_A3685at 4233.209 kb on + strandat 4233.210 kb on - strandat 4233.210 kb on - strandat 4233.464 kb on + strand, within Rru_A3686at 4233.464 kb on + strand, within Rru_A3686at 4233.465 kb on - strand, within Rru_A3686at 4233.465 kb on - strand, within Rru_A3686at 4233.465 kb on - strand, within Rru_A3686at 4233.590 kb on + strand, within Rru_A3686at 4233.590 kb on + strand, within Rru_A3686at 4233.591 kb on - strand, within Rru_A3686at 4233.591 kb on - strand, within Rru_A3686at 4233.591 kb on - strand, within Rru_A3686at 4233.591 kb on - strand, within Rru_A3686at 4233.591 kb on - strand, within Rru_A3686at 4233.596 kb on + strand, within Rru_A3686at 4233.596 kb on + strand, within Rru_A3686at 4233.596 kb on + strand, within Rru_A3686at 4233.597 kb on - strand, within Rru_A3686at 4233.597 kb on - strand, within Rru_A3686at 4233.597 kb on - strand, within Rru_A3686at 4233.597 kb on - strand, within Rru_A3686at 4233.665 kb on + strand, within Rru_A3686at 4233.971 kb on + strand, within Rru_A3686at 4233.971 kb on + strand, within Rru_A3686at 4233.971 kb on + strand, within Rru_A3686at 4234.178 kb on + strand, within Rru_A3686at 4234.178 kb on + strand, within Rru_A3686at 4234.178 kb on + strand, within Rru_A3686at 4234.178 kb on + strand, within Rru_A3686at 4234.178 kb on + strand, within Rru_A3686at 4234.178 kb on + strand, within Rru_A3686at 4234.178 kb on + strand, within Rru_A3686at 4234.179 kb on - strand, within Rru_A3686at 4234.179 kb on - strand, within Rru_A3686at 4234.179 kb on - strand, within Rru_A3686at 4234.179 kb on - strand, within Rru_A3686at 4234.202 kb on + strand, within Rru_A3686at 4234.202 kb on + strand, within Rru_A3686at 4234.202 kb on + strand, within Rru_A3686at 4234.202 kb on + strand, within Rru_A3686at 4234.203 kb on - strand, within Rru_A3686at 4234.216 kb on + strand, within Rru_A3686at 4234.248 kb on - strand, within Rru_A3686at 4234.397 kb on + strandat 4234.397 kb on + strandat 4234.398 kb on - strandat 4234.433 kb on + strandat 4234.793 kb on + strand, within Rru_A3687at 4234.793 kb on + strand, within Rru_A3687at 4234.793 kb on + strand, within Rru_A3687at 4234.794 kb on - strand, within Rru_A3687at 4234.794 kb on - strand, within Rru_A3687at 4234.795 kb on + strand, within Rru_A3687at 4234.795 kb on + strand, within Rru_A3687at 4234.795 kb on + strand, within Rru_A3687at 4234.795 kb on + strand, within Rru_A3687at 4234.795 kb on + strand, within Rru_A3687at 4234.796 kb on - strand, within Rru_A3687at 4234.796 kb on - strand, within Rru_A3687at 4234.963 kb on + strand, within Rru_A3687at 4235.101 kb on + strandat 4235.101 kb on + strandat 4235.101 kb on + strandat 4235.101 kb on + strandat 4235.101 kb on + strandat 4235.102 kb on - strandat 4235.148 kb on + strandat 4235.148 kb on + strandat 4235.148 kb on + strandat 4235.148 kb on + strandat 4235.148 kb on + strandat 4235.149 kb on - strandat 4235.220 kb on + strand, within Rru_A3688at 4235.410 kb on + strand, within Rru_A3688at 4235.410 kb on + strand, within Rru_A3688at 4235.410 kb on + strand, within Rru_A3688at 4235.410 kb on + strand, within Rru_A3688at 4235.410 kb on + strand, within Rru_A3688at 4235.410 kb on + strand, within Rru_A3688at 4235.411 kb on - strand, within Rru_A3688at 4235.411 kb on - strand, within Rru_A3688at 4235.411 kb on - strand, within Rru_A3688at 4235.411 kb on - strand, within Rru_A3688at 4235.411 kb on - strand, within Rru_A3688at 4235.411 kb on - strand, within Rru_A3688at 4235.412 kb on + strand, within Rru_A3688at 4235.413 kb on - strand, within Rru_A3688at 4235.413 kb on - strand, within Rru_A3688at 4235.413 kb on - strand, within Rru_A3688

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
remove
4,232,682 + -1.4
4,232,684 + +0.2
4,232,684 + -0.8
4,232,685 - -0.8
4,232,685 - +0.5
4,232,685 - +0.5
4,232,785 - Rru_A3685 0.18 +1.1
4,232,785 - Rru_A3685 0.18 +1.1
4,232,785 - Rru_A3685 0.18 -0.5
4,232,785 - Rru_A3685 0.18 +0.2
4,232,785 - Rru_A3685 0.18 -0.1
4,232,785 - Rru_A3685 0.18 +0.1
4,232,915 + Rru_A3685 0.42 +0.6
4,233,001 + Rru_A3685 0.59 -0.1
4,233,001 + Rru_A3685 0.59 -0.6
4,233,001 + Rru_A3685 0.59 -1.3
4,233,002 - Rru_A3685 0.59 -1.7
4,233,002 - Rru_A3685 0.59 +0.7
4,233,004 - Rru_A3685 0.59 -0.4
4,233,117 - Rru_A3685 0.81 -0.7
4,233,133 + Rru_A3685 0.84 -1.4
4,233,133 + Rru_A3685 0.84 -0.3
4,233,140 + Rru_A3685 0.85 +0.9
4,233,140 + Rru_A3685 0.85 +0.9
4,233,141 - Rru_A3685 0.85 +0.9
4,233,145 + Rru_A3685 0.86 -1.6
4,233,209 + -4.2
4,233,210 - -1.7
4,233,210 - -1.6
4,233,464 + Rru_A3686 0.13 -0.6
4,233,464 + Rru_A3686 0.13 -0.3
4,233,465 - Rru_A3686 0.13 +1.0
4,233,465 - Rru_A3686 0.13 -1.2
4,233,465 - Rru_A3686 0.13 +0.7
4,233,590 + Rru_A3686 0.24 +0.8
4,233,590 + Rru_A3686 0.24 -0.0
4,233,591 - Rru_A3686 0.24 +2.5
4,233,591 - Rru_A3686 0.24 +0.9
4,233,591 - Rru_A3686 0.24 -1.0
4,233,591 - Rru_A3686 0.24 -0.2
4,233,591 - Rru_A3686 0.24 +0.5
4,233,596 + Rru_A3686 0.25 +0.7
4,233,596 + Rru_A3686 0.25 -0.2
4,233,596 + Rru_A3686 0.25 -0.4
4,233,597 - Rru_A3686 0.25 +0.3
4,233,597 - Rru_A3686 0.25 +0.2
4,233,597 - Rru_A3686 0.25 -0.2
4,233,597 - Rru_A3686 0.25 -0.4
4,233,665 + Rru_A3686 0.31 +1.0
4,233,971 + Rru_A3686 0.58 +0.2
4,233,971 + Rru_A3686 0.58 +0.2
4,233,971 + Rru_A3686 0.58 -0.2
4,234,178 + Rru_A3686 0.77 -2.6
4,234,178 + Rru_A3686 0.77 +0.3
4,234,178 + Rru_A3686 0.77 +0.3
4,234,178 + Rru_A3686 0.77 -1.7
4,234,178 + Rru_A3686 0.77 -1.9
4,234,178 + Rru_A3686 0.77 -2.5
4,234,178 + Rru_A3686 0.77 -1.7
4,234,179 - Rru_A3686 0.77 +0.9
4,234,179 - Rru_A3686 0.77 +1.4
4,234,179 - Rru_A3686 0.77 +0.2
4,234,179 - Rru_A3686 0.77 +0.3
4,234,202 + Rru_A3686 0.79 +0.1
4,234,202 + Rru_A3686 0.79 -2.5
4,234,202 + Rru_A3686 0.79 +0.2
4,234,202 + Rru_A3686 0.79 -0.1
4,234,203 - Rru_A3686 0.79 +0.3
4,234,216 + Rru_A3686 0.80 +0.4
4,234,248 - Rru_A3686 0.83 -0.2
4,234,397 + +1.2
4,234,397 + +0.3
4,234,398 - -1.7
4,234,433 + +1.3
4,234,793 + Rru_A3687 0.49 -0.8
4,234,793 + Rru_A3687 0.49 -0.1
4,234,793 + Rru_A3687 0.49 -0.4
4,234,794 - Rru_A3687 0.49 +0.7
4,234,794 - Rru_A3687 0.49 -2.1
4,234,795 + Rru_A3687 0.49 +0.1
4,234,795 + Rru_A3687 0.49 -2.4
4,234,795 + Rru_A3687 0.49 -0.7
4,234,795 + Rru_A3687 0.49 -3.0
4,234,795 + Rru_A3687 0.49 -1.0
4,234,796 - Rru_A3687 0.49 -3.4
4,234,796 - Rru_A3687 0.49 +0.3
4,234,963 + Rru_A3687 0.76 -0.7
4,235,101 + -5.1
4,235,101 + -1.0
4,235,101 + -0.4
4,235,101 + -0.6
4,235,101 + -2.4
4,235,102 - -0.5
4,235,148 + -1.4
4,235,148 + -0.9
4,235,148 + -3.8
4,235,148 + +0.6
4,235,148 + -1.4
4,235,149 - -0.5
4,235,220 + Rru_A3688 0.15 +2.1
4,235,410 + Rru_A3688 0.42 -1.9
4,235,410 + Rru_A3688 0.42 -1.3
4,235,410 + Rru_A3688 0.42 -0.0
4,235,410 + Rru_A3688 0.42 +0.4
4,235,410 + Rru_A3688 0.42 +0.3
4,235,410 + Rru_A3688 0.42 -2.0
4,235,411 - Rru_A3688 0.42 -2.3
4,235,411 - Rru_A3688 0.42 -0.6
4,235,411 - Rru_A3688 0.42 -2.0
4,235,411 - Rru_A3688 0.42 +0.3
4,235,411 - Rru_A3688 0.42 +0.1
4,235,411 - Rru_A3688 0.42 +0.7
4,235,412 + Rru_A3688 0.42 -0.6
4,235,413 - Rru_A3688 0.43 -1.1
4,235,413 - Rru_A3688 0.43 +0.0
4,235,413 - Rru_A3688 0.43 -1.6

Or see this region's nucleotide sequence