Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3221

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3220 and Rru_A3221 are separated by 149 nucleotidesRru_A3221 and Rru_A3222 are separated by 235 nucleotides Rru_A3220: Rru_A3220 - TonB-dependent receptor (NCBI), at 3,713,858 to 3,715,822 _A3220 Rru_A3221: Rru_A3221 - hypothetical protein (NCBI), at 3,715,972 to 3,716,499 _A3221 Rru_A3222: Rru_A3222 - transport system permease protein (NCBI), at 3,716,735 to 3,717,811 _A3222 Position (kb) 3715 3716 3717Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3714.987 kb on + strand, within Rru_A3220at 3714.987 kb on + strand, within Rru_A3220at 3714.987 kb on + strand, within Rru_A3220at 3714.988 kb on - strand, within Rru_A3220at 3714.988 kb on - strand, within Rru_A3220at 3715.054 kb on + strand, within Rru_A3220at 3715.055 kb on - strand, within Rru_A3220at 3715.055 kb on - strand, within Rru_A3220at 3715.056 kb on + strand, within Rru_A3220at 3715.056 kb on + strand, within Rru_A3220at 3715.056 kb on + strand, within Rru_A3220at 3715.057 kb on - strand, within Rru_A3220at 3715.086 kb on + strand, within Rru_A3220at 3715.086 kb on + strand, within Rru_A3220at 3715.086 kb on + strand, within Rru_A3220at 3715.303 kb on - strand, within Rru_A3220at 3715.314 kb on + strand, within Rru_A3220at 3715.315 kb on - strand, within Rru_A3220at 3715.315 kb on - strand, within Rru_A3220at 3715.503 kb on + strand, within Rru_A3220at 3715.512 kb on + strand, within Rru_A3220at 3715.512 kb on + strand, within Rru_A3220at 3715.512 kb on + strand, within Rru_A3220at 3715.512 kb on + strand, within Rru_A3220at 3715.813 kb on + strandat 3715.852 kb on - strandat 3716.032 kb on + strand, within Rru_A3221at 3716.459 kb on + strandat 3716.460 kb on - strandat 3716.460 kb on - strandat 3716.460 kb on - strandat 3716.628 kb on - strandat 3716.691 kb on - strandat 3716.691 kb on - strandat 3716.774 kb on + strandat 3716.864 kb on + strand, within Rru_A3222at 3716.864 kb on + strand, within Rru_A3222at 3716.865 kb on - strand, within Rru_A3222at 3717.054 kb on + strand, within Rru_A3222at 3717.307 kb on + strand, within Rru_A3222

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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3,714,987 + Rru_A3220 0.57 -0.1
3,714,987 + Rru_A3220 0.57 +0.7
3,714,987 + Rru_A3220 0.57 -2.5
3,714,988 - Rru_A3220 0.58 -1.4
3,714,988 - Rru_A3220 0.58 +0.9
3,715,054 + Rru_A3220 0.61 +0.3
3,715,055 - Rru_A3220 0.61 -0.8
3,715,055 - Rru_A3220 0.61 -0.9
3,715,056 + Rru_A3220 0.61 +0.2
3,715,056 + Rru_A3220 0.61 -1.4
3,715,056 + Rru_A3220 0.61 -0.5
3,715,057 - Rru_A3220 0.61 -0.8
3,715,086 + Rru_A3220 0.62 -1.1
3,715,086 + Rru_A3220 0.62 +0.1
3,715,086 + Rru_A3220 0.62 +1.5
3,715,303 - Rru_A3220 0.74 +0.8
3,715,314 + Rru_A3220 0.74 +0.2
3,715,315 - Rru_A3220 0.74 -3.1
3,715,315 - Rru_A3220 0.74 -2.1
3,715,503 + Rru_A3220 0.84 -0.5
3,715,512 + Rru_A3220 0.84 +1.0
3,715,512 + Rru_A3220 0.84 +0.1
3,715,512 + Rru_A3220 0.84 +0.2
3,715,512 + Rru_A3220 0.84 +0.3
3,715,813 + -0.0
3,715,852 - -0.1
3,716,032 + Rru_A3221 0.11 -1.2
3,716,459 + -1.2
3,716,460 - -2.4
3,716,460 - -0.1
3,716,460 - +0.5
3,716,628 - -4.9
3,716,691 - +0.8
3,716,691 - +0.8
3,716,774 + -0.8
3,716,864 + Rru_A3222 0.12 -0.2
3,716,864 + Rru_A3222 0.12 -0.2
3,716,865 - Rru_A3222 0.12 +2.5
3,717,054 + Rru_A3222 0.30 -0.2
3,717,307 + Rru_A3222 0.53 -0.1

Or see this region's nucleotide sequence